Wall clock time and date at job start Tue Mar 31 2020 18:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47113 * 2 1 4 4 H 1.08993 * 109.47582 * 54.26620 * 3 2 1 5 5 C 1.50701 * 109.46924 * 174.26808 * 3 2 1 6 6 H 1.07994 * 120.00492 * 114.23428 * 5 3 2 7 7 C 1.37882 * 119.99980 * 294.22791 * 5 3 2 8 8 N 1.31514 * 120.00112 * 156.83430 * 7 5 3 9 9 Si 1.86801 * 119.99792 * 336.84012 * 7 5 3 10 10 H 1.48500 * 109.47096 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47472 * 299.99570 * 9 7 5 12 12 H 1.48502 * 109.47310 * 59.99976 * 9 7 5 13 13 N 1.46504 * 109.47185 * 294.26115 * 3 2 1 14 14 C 1.34774 * 119.99911 * 85.00465 * 13 3 2 15 15 O 1.21366 * 119.99992 * 359.97438 * 14 13 3 16 16 C 1.49349 * 120.00436 * 179.97438 * 14 13 3 17 17 O 1.21378 * 119.99759 * 0.02562 * 16 14 13 18 18 N 1.34783 * 120.00420 * 179.97438 * 16 14 13 19 19 C 1.39716 * 120.00084 * 185.61314 * 18 16 14 20 20 C 1.38986 * 120.04631 * 212.54545 * 19 18 16 21 21 C 1.38102 * 120.03338 * 179.74244 * 20 19 18 22 22 C 1.38231 * 120.13190 * 0.55646 * 21 20 19 23 23 C 1.38774 * 120.09289 * 359.70209 * 22 21 20 24 24 O 1.35894 * 120.01715 * 180.02562 * 23 22 21 25 25 C 1.42898 * 116.99894 * 5.47966 * 24 23 22 26 26 C 1.53004 * 109.47261 * 155.08410 * 25 24 23 27 27 C 1.52998 * 109.46942 * 275.08060 * 25 24 23 28 28 C 1.38610 * 119.96335 * 0.02562 * 23 22 21 29 29 H 1.09001 * 109.46852 * 59.99578 * 1 2 3 30 30 H 1.09002 * 109.47208 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46992 * 300.00290 * 1 2 3 32 32 H 1.08998 * 109.46992 * 239.99710 * 2 1 3 33 33 H 1.09001 * 109.46852 * 120.00421 * 2 1 3 34 34 H 0.96996 * 120.00077 * 354.95442 * 8 7 5 35 35 H 0.96997 * 120.00584 * 265.00341 * 13 3 2 36 36 H 0.97003 * 119.99324 * 5.61390 * 18 16 14 37 37 H 1.07997 * 119.98139 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.93897 * 180.27818 * 21 20 19 39 39 H 1.07996 * 119.94978 * 179.71730 * 22 21 20 40 40 H 1.08993 * 109.47481 * 35.08561 * 25 24 23 41 41 H 1.09002 * 109.46979 * 59.99788 * 26 25 24 42 42 H 1.09003 * 109.47269 * 179.97438 * 26 25 24 43 43 H 1.08999 * 109.47214 * 299.99758 * 26 25 24 44 44 H 1.09008 * 109.46919 * 60.00322 * 27 25 24 45 45 H 1.09003 * 109.47188 * 179.97438 * 27 25 24 46 46 H 1.08993 * 109.47442 * 300.00526 * 27 25 24 47 47 H 1.08008 * 120.06213 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5954 1.9851 0.8341 5 6 3.5404 1.4448 0.1419 6 1 4.1589 1.8009 -0.6686 7 6 4.1234 0.9923 1.3066 8 7 5.3662 0.5623 1.2959 9 14 3.1479 0.9900 2.8997 10 1 3.9949 0.4594 3.9980 11 1 2.7269 2.3766 3.2244 12 1 1.9462 0.1317 2.7431 13 7 1.6677 2.0920 -1.2593 14 6 0.4520 2.6585 -1.3916 15 8 -0.3345 2.6300 -0.4677 16 6 0.0726 3.3213 -2.6750 17 8 0.8590 3.3493 -3.5992 18 7 -1.1435 3.8873 -2.8075 19 6 -1.5430 4.4032 -4.0430 20 6 -2.3807 5.5109 -4.0965 21 6 -2.7712 6.0239 -5.3178 22 6 -2.3399 5.4307 -6.4895 23 6 -1.5077 4.3212 -6.4423 24 8 -1.0841 3.7396 -7.5951 25 6 -1.4341 4.3918 -8.8175 26 6 -0.4244 4.0156 -9.9037 27 6 -2.8344 3.9506 -9.2481 28 6 -1.1088 3.8065 -5.2187 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 5.8487 0.4944 0.4573 35 1 2.2962 2.1145 -1.9978 36 1 -1.7411 3.9364 -2.0451 37 1 -2.7228 5.9735 -3.1825 38 1 -3.4186 6.8874 -5.3576 39 1 -2.6507 5.8315 -7.4429 40 1 -1.4229 5.4716 -8.6694 41 1 -0.4356 2.9357 -10.0518 42 1 -0.6916 4.5127 -10.8362 43 1 0.5732 4.3299 -9.5969 44 1 -3.5538 4.2186 -8.4742 45 1 -3.1016 4.4484 -10.1802 46 1 -2.8456 2.8708 -9.3962 47 1 -0.4608 2.9433 -5.1801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297017242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:49 Heat of formation + Delta-G solvation = -86.533290 kcal Electronic energy + Delta-G solvation = -28528.066687 eV Core-core repulsion = 24483.286499 eV Total energy + Delta-G solvation = -4044.780188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.05471 -40.18049 -38.78997 -37.58587 -35.64656 -34.67515 -33.52133 -32.50446 -31.50029 -30.32206 -29.64699 -27.66826 -27.49928 -25.04457 -23.16470 -23.02591 -22.35484 -21.10533 -20.27493 -19.68439 -19.07014 -18.36078 -17.24783 -16.77299 -16.43774 -16.13049 -15.70768 -15.69530 -15.53923 -15.06050 -14.40883 -14.10439 -13.90451 -13.73673 -13.70078 -13.40817 -13.11777 -12.82202 -12.70395 -12.62506 -12.52175 -12.39062 -12.27498 -11.96847 -11.86139 -11.80401 -11.38615 -11.13276 -10.96975 -10.88848 -10.76689 -10.50855 -10.41829 -9.93946 -9.80605 -9.27534 -9.19526 -8.59085 -8.36336 -8.32900 -8.23424 -6.65433 -4.26964 0.93702 1.25357 1.78856 2.48492 2.96301 3.36080 3.41658 3.43388 3.56981 3.67926 3.98765 4.37607 4.39391 4.50352 4.63603 4.67244 4.84304 4.90218 4.95425 5.04865 5.05995 5.14233 5.28034 5.32688 5.34679 5.39403 5.65153 5.71635 5.77119 5.97479 6.00535 6.00911 6.05455 6.15744 6.16675 6.24175 6.55517 6.60942 6.69137 6.78721 6.90050 6.98291 7.19082 7.25786 7.26167 7.50750 7.76426 8.18221 8.24614 8.47489 8.75365 9.39314 10.73473 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.002404 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.560061 B =11643.226325 C =12294.078705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.248 3.752 4 H 0.046 0.954 5 C -0.629 4.629 6 H 0.066 0.934 7 C 0.048 3.952 8 N -0.886 5.886 9 Si 1.031 2.969 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.272 1.272 13 N -0.660 5.660 14 C 0.495 3.505 15 O -0.531 6.531 16 C 0.507 3.493 17 O -0.497 6.497 18 N -0.651 5.651 19 C 0.190 3.810 20 C -0.182 4.182 21 C -0.060 4.060 22 C -0.229 4.229 23 C 0.152 3.848 24 O -0.307 6.307 25 C 0.076 3.924 26 C -0.150 4.150 27 C -0.181 4.181 28 C -0.158 4.158 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.272 0.728 35 H 0.406 0.594 36 H 0.425 0.575 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.039 9.204 -18.226 27.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.145 3.855 4 H 0.064 0.936 5 C -0.666 4.666 6 H 0.084 0.916 7 C -0.160 4.160 8 N -0.517 5.517 9 Si 0.858 3.142 10 H -0.207 1.207 11 H -0.206 1.206 12 H -0.197 1.197 13 N -0.309 5.309 14 C 0.274 3.726 15 O -0.409 6.409 16 C 0.289 3.711 17 O -0.369 6.369 18 N -0.298 5.298 19 C 0.095 3.905 20 C -0.202 4.202 21 C -0.079 4.079 22 C -0.249 4.249 23 C 0.106 3.894 24 O -0.221 6.221 25 C 0.020 3.980 26 C -0.207 4.207 27 C -0.238 4.238 28 C -0.179 4.179 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.241 0.759 36 H 0.263 0.737 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.681 8.617 -16.569 25.718 hybrid contribution -0.194 0.586 -1.774 1.879 sum -17.875 9.203 -18.344 27.216 Atomic orbital electron populations 1.21910 0.97346 0.99263 1.01768 1.22292 0.93762 0.99332 1.02016 1.19252 0.96396 0.88733 0.81121 0.93612 1.22002 0.89283 1.50179 1.05112 0.91625 1.25638 0.96791 0.91766 1.01854 1.70854 1.11869 1.38001 1.31008 0.84215 0.75942 0.77702 0.76342 1.20739 1.20573 1.19741 1.46224 1.13279 1.52558 1.18812 1.19642 0.84423 0.81404 0.87119 1.90737 1.50377 1.59593 1.40238 1.20932 0.81609 0.78853 0.89679 1.90777 1.49550 1.55439 1.41175 1.43241 1.17374 1.57589 1.11576 1.17384 0.95735 0.92783 0.84567 1.20818 1.03734 0.96748 0.98948 1.20678 0.97699 0.98413 0.91099 1.21245 1.04451 0.99558 0.99608 1.18677 0.92887 0.91813 0.86002 1.86154 1.73159 1.50462 1.12327 1.22452 0.95387 0.97138 0.82997 1.21864 0.99005 1.03155 0.96676 1.22398 0.96211 1.03089 1.02105 1.20327 1.05548 1.03554 0.88505 0.93609 0.94703 0.92794 0.92766 0.91235 0.91752 0.75854 0.73672 0.85266 0.85323 0.85291 0.90806 0.91365 0.90535 0.91465 0.91723 0.91034 0.91345 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.53 37.16 0.32 -2.50 16 2 C -0.14 -2.94 5.33 -26.73 -0.14 -3.08 16 3 C 0.25 5.78 1.83 -69.08 -0.13 5.65 16 4 H 0.05 1.13 6.14 -51.93 -0.32 0.81 16 5 C -0.63 -16.76 8.95 -34.44 -0.31 -17.07 16 6 H 0.07 1.86 7.96 -52.49 -0.42 1.44 16 7 C 0.05 1.32 5.21 -17.82 -0.09 1.23 16 8 N -0.89 -25.90 13.70 55.43 0.76 -25.14 16 9 Si 1.03 24.30 26.45 -169.99 -4.50 19.80 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -5.97 6.13 56.52 0.35 -5.63 16 13 N -0.66 -13.59 5.02 -55.40 -0.28 -13.87 16 14 C 0.50 9.32 6.49 -11.63 -0.08 9.25 16 15 O -0.53 -10.50 13.62 5.48 0.07 -10.42 16 16 C 0.51 8.44 7.62 -11.63 -0.09 8.35 16 17 O -0.50 -9.16 14.14 5.47 0.08 -9.08 16 18 N -0.65 -8.80 5.32 -10.31 -0.05 -8.86 16 19 C 0.19 2.47 6.28 -83.78 -0.53 1.95 16 20 C -0.18 -1.88 9.96 -39.35 -0.39 -2.27 16 21 C -0.06 -0.54 10.03 -39.63 -0.40 -0.94 16 22 C -0.23 -2.24 8.24 -39.39 -0.32 -2.57 16 23 C 0.15 1.88 6.60 -39.25 -0.26 1.62 16 24 O -0.31 -3.69 9.80 -19.41 -0.19 -3.88 16 25 C 0.08 0.62 2.85 -26.73 -0.08 0.54 16 26 C -0.15 -1.01 9.56 37.16 0.36 -0.66 16 27 C -0.18 -1.18 9.17 37.16 0.34 -0.84 16 28 C -0.16 -2.25 8.59 -39.23 -0.34 -2.59 16 29 H 0.04 0.87 5.63 -51.93 -0.29 0.58 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 1.06 7.89 -51.93 -0.41 0.65 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.57 5.48 -51.93 -0.28 1.29 16 34 H 0.27 7.90 8.73 -40.82 -0.36 7.55 16 35 H 0.41 8.11 7.99 -40.82 -0.33 7.79 16 36 H 0.42 4.91 8.29 -40.82 -0.34 4.57 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.96 5.41 -52.49 -0.28 0.68 16 40 H 0.07 0.53 6.31 -51.93 -0.33 0.20 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.44 6.90 -51.92 -0.36 0.08 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.14 2.30 6.38 -52.48 -0.33 1.97 16 LS Contribution 379.87 15.07 5.72 5.72 Total: -1.00 -30.80 379.87 -7.22 -38.02 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -6.71 Total: 11.64 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.13 Total: -3.93 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.43 Total: -47.87 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.04 Total: -23.38 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -4.50 Total: 19.80 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.80 -7.22 -38.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297017242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.514 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds