Wall clock time and date at job start Tue Mar 31 2020 18:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47113 * 2 1 4 4 H 1.08993 * 109.47582 * 54.26620 * 3 2 1 5 5 C 1.50701 * 109.46924 * 174.26808 * 3 2 1 6 6 H 1.07994 * 120.00492 * 114.23428 * 5 3 2 7 7 C 1.37882 * 119.99980 * 294.22791 * 5 3 2 8 8 N 1.31514 * 120.00112 * 156.83430 * 7 5 3 9 9 Si 1.86801 * 119.99792 * 336.84012 * 7 5 3 10 10 H 1.48500 * 109.47096 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47472 * 299.99570 * 9 7 5 12 12 H 1.48502 * 109.47310 * 59.99976 * 9 7 5 13 13 N 1.46504 * 109.47185 * 294.26115 * 3 2 1 14 14 C 1.34774 * 119.99911 * 85.00465 * 13 3 2 15 15 O 1.21366 * 119.99992 * 359.97438 * 14 13 3 16 16 C 1.49349 * 120.00436 * 179.97438 * 14 13 3 17 17 O 1.21378 * 119.99759 * 0.02562 * 16 14 13 18 18 N 1.34783 * 120.00420 * 179.97438 * 16 14 13 19 19 C 1.39716 * 120.00084 * 185.61314 * 18 16 14 20 20 C 1.38986 * 120.04631 * 212.54545 * 19 18 16 21 21 C 1.38102 * 120.03338 * 179.74244 * 20 19 18 22 22 C 1.38231 * 120.13190 * 0.55646 * 21 20 19 23 23 C 1.38774 * 120.09289 * 359.70209 * 22 21 20 24 24 O 1.35894 * 120.01715 * 180.02562 * 23 22 21 25 25 C 1.42898 * 116.99894 * 5.47966 * 24 23 22 26 26 C 1.53004 * 109.47261 * 155.08410 * 25 24 23 27 27 C 1.52998 * 109.46942 * 275.08060 * 25 24 23 28 28 C 1.38610 * 119.96335 * 0.02562 * 23 22 21 29 29 H 1.09001 * 109.46852 * 59.99578 * 1 2 3 30 30 H 1.09002 * 109.47208 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46992 * 300.00290 * 1 2 3 32 32 H 1.08998 * 109.46992 * 239.99710 * 2 1 3 33 33 H 1.09001 * 109.46852 * 120.00421 * 2 1 3 34 34 H 0.96996 * 120.00077 * 354.95442 * 8 7 5 35 35 H 0.96997 * 120.00584 * 265.00341 * 13 3 2 36 36 H 0.97003 * 119.99324 * 5.61390 * 18 16 14 37 37 H 1.07997 * 119.98139 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.93897 * 180.27818 * 21 20 19 39 39 H 1.07996 * 119.94978 * 179.71730 * 22 21 20 40 40 H 1.08993 * 109.47481 * 35.08561 * 25 24 23 41 41 H 1.09002 * 109.46979 * 59.99788 * 26 25 24 42 42 H 1.09003 * 109.47269 * 179.97438 * 26 25 24 43 43 H 1.08999 * 109.47214 * 299.99758 * 26 25 24 44 44 H 1.09008 * 109.46919 * 60.00322 * 27 25 24 45 45 H 1.09003 * 109.47188 * 179.97438 * 27 25 24 46 46 H 1.08993 * 109.47442 * 300.00526 * 27 25 24 47 47 H 1.08008 * 120.06213 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5954 1.9851 0.8341 5 6 3.5404 1.4448 0.1419 6 1 4.1589 1.8009 -0.6686 7 6 4.1234 0.9923 1.3066 8 7 5.3662 0.5623 1.2959 9 14 3.1479 0.9900 2.8997 10 1 3.9949 0.4594 3.9980 11 1 2.7269 2.3766 3.2244 12 1 1.9462 0.1317 2.7431 13 7 1.6677 2.0920 -1.2593 14 6 0.4520 2.6585 -1.3916 15 8 -0.3345 2.6300 -0.4677 16 6 0.0726 3.3213 -2.6750 17 8 0.8590 3.3493 -3.5992 18 7 -1.1435 3.8873 -2.8075 19 6 -1.5430 4.4032 -4.0430 20 6 -2.3807 5.5109 -4.0965 21 6 -2.7712 6.0239 -5.3178 22 6 -2.3399 5.4307 -6.4895 23 6 -1.5077 4.3212 -6.4423 24 8 -1.0841 3.7396 -7.5951 25 6 -1.4341 4.3918 -8.8175 26 6 -0.4244 4.0156 -9.9037 27 6 -2.8344 3.9506 -9.2481 28 6 -1.1088 3.8065 -5.2187 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 5.8487 0.4944 0.4573 35 1 2.2962 2.1145 -1.9978 36 1 -1.7411 3.9364 -2.0451 37 1 -2.7228 5.9735 -3.1825 38 1 -3.4186 6.8874 -5.3576 39 1 -2.6507 5.8315 -7.4429 40 1 -1.4229 5.4716 -8.6694 41 1 -0.4356 2.9357 -10.0518 42 1 -0.6916 4.5127 -10.8362 43 1 0.5732 4.3299 -9.5969 44 1 -3.5538 4.2186 -8.4742 45 1 -3.1016 4.4484 -10.1802 46 1 -2.8456 2.8708 -9.3962 47 1 -0.4608 2.9433 -5.1801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297017242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:48 Heat of formation + Delta-G solvation = -107.701569 kcal Electronic energy + Delta-G solvation = -28528.984613 eV Core-core repulsion = 24483.286499 eV Total energy + Delta-G solvation = -4045.698114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.25081 -41.20348 -40.12651 -38.61992 -37.33114 -35.84474 -34.50917 -34.16769 -33.19191 -31.22390 -30.54367 -29.35891 -28.17334 -26.40268 -24.43259 -23.95193 -23.81618 -22.24064 -21.50594 -21.26518 -20.42174 -19.62841 -18.90128 -18.05815 -17.40639 -17.19916 -17.01517 -16.92907 -16.33431 -16.32712 -15.79296 -15.47057 -15.13684 -14.77464 -14.67610 -14.61542 -14.54173 -14.44758 -14.03883 -13.81050 -13.60328 -13.44818 -13.21091 -13.04860 -12.87706 -12.69834 -12.65180 -12.54383 -12.36948 -12.27322 -11.87880 -11.78399 -11.66062 -11.54884 -11.33552 -11.22484 -10.71524 -10.48522 -10.04894 -9.54535 -9.10739 -8.84971 -6.46454 -0.13714 0.41054 0.56256 1.21876 1.48179 1.51780 1.72079 2.04093 2.18143 2.43641 2.68093 2.74884 2.92981 3.37742 3.78100 3.88634 3.98600 4.01732 4.17784 4.18211 4.26716 4.27301 4.35425 4.46459 4.47366 4.53009 4.68470 4.76843 4.81348 4.83640 4.90617 5.05687 5.11167 5.13833 5.15374 5.18145 5.21430 5.25910 5.31544 5.38681 5.43125 5.49157 5.59011 5.74222 5.92218 5.98173 6.41948 6.47686 6.47836 6.66249 6.93974 7.27389 8.52946 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.002404 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.560061 B =11643.226325 C =12294.078705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C 0.253 3.747 4 H 0.039 0.961 5 C -0.630 4.630 6 H 0.036 0.964 7 C 0.004 3.996 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.282 1.282 11 H -0.269 1.269 12 H -0.244 1.244 13 N -0.670 5.670 14 C 0.501 3.499 15 O -0.536 6.536 16 C 0.512 3.488 17 O -0.521 6.521 18 N -0.632 5.632 19 C 0.167 3.833 20 C -0.176 4.176 21 C -0.051 4.051 22 C -0.219 4.219 23 C 0.139 3.861 24 O -0.334 6.334 25 C 0.066 3.934 26 C -0.150 4.150 27 C -0.176 4.176 28 C -0.188 4.188 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.260 0.740 35 H 0.407 0.593 36 H 0.435 0.565 37 H 0.156 0.844 38 H 0.170 0.830 39 H 0.157 0.843 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.057 0.943 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.630 11.063 -18.911 30.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C 0.149 3.851 4 H 0.057 0.943 5 C -0.667 4.667 6 H 0.054 0.946 7 C -0.198 4.198 8 N -0.550 5.550 9 Si 0.888 3.112 10 H -0.208 1.208 11 H -0.194 1.194 12 H -0.168 1.168 13 N -0.319 5.319 14 C 0.280 3.720 15 O -0.415 6.415 16 C 0.294 3.706 17 O -0.396 6.396 18 N -0.280 5.280 19 C 0.073 3.927 20 C -0.196 4.196 21 C -0.070 4.070 22 C -0.238 4.238 23 C 0.092 3.908 24 O -0.249 6.249 25 C 0.011 3.989 26 C -0.207 4.207 27 C -0.233 4.233 28 C -0.209 4.209 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.242 0.758 36 H 0.275 0.725 37 H 0.173 0.827 38 H 0.187 0.813 39 H 0.174 0.826 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.123 0.877 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.115 0.885 46 H 0.076 0.924 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -21.328 10.498 -17.285 29.392 hybrid contribution 0.882 0.096 -1.746 1.958 sum -20.446 10.594 -19.031 29.874 Atomic orbital electron populations 1.21807 0.95064 1.00905 1.01578 1.22195 0.95732 0.97768 1.01520 1.19001 0.93993 0.90001 0.82107 0.94302 1.22155 0.91234 1.49158 1.04145 0.94583 1.26881 0.96894 0.91049 1.05014 1.70960 1.13097 1.40592 1.30309 0.83769 0.75798 0.78817 0.72860 1.20778 1.19410 1.16849 1.46071 1.14323 1.53441 1.18037 1.19892 0.83524 0.80686 0.87861 1.90719 1.50357 1.59610 1.40781 1.20408 0.82577 0.79254 0.88315 1.90782 1.50575 1.56760 1.41483 1.43055 1.16140 1.56333 1.12436 1.17591 0.97355 0.94277 0.83511 1.21160 1.02239 0.95352 1.00814 1.21183 0.96958 0.98842 0.89986 1.21594 1.02790 0.98068 1.01387 1.18821 0.93635 0.92735 0.85559 1.86134 1.73727 1.51644 1.13363 1.22793 0.96597 0.97731 0.81800 1.21913 0.98254 1.02970 0.97523 1.22373 0.95005 1.02706 1.03219 1.20270 1.06617 1.03730 0.90301 0.93731 0.92187 0.92964 0.93084 0.91972 0.93113 0.75826 0.72501 0.82682 0.81279 0.82581 0.89516 0.92155 0.87744 0.92629 0.91854 0.88475 0.92379 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 8.53 71.98 0.61 -4.40 16 2 C -0.13 -5.71 5.33 30.59 0.16 -5.55 16 3 C 0.25 11.83 1.83 44.24 0.08 11.91 16 4 H 0.04 1.90 6.14 -2.39 -0.01 1.88 16 5 C -0.63 -34.51 8.95 25.60 0.23 -34.28 16 6 H 0.04 2.14 7.96 -2.91 -0.02 2.12 16 7 C 0.00 0.22 5.21 84.66 0.44 0.66 16 8 N -0.92 -55.15 13.70 21.45 0.29 -54.86 16 9 Si 1.07 48.62 26.45 68.60 1.81 50.44 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.24 -10.02 6.13 99.48 0.61 -9.41 16 13 N -0.67 -28.09 5.02 -447.54 -2.25 -30.34 16 14 C 0.50 18.82 6.49 87.24 0.57 19.39 16 15 O -0.54 -20.64 13.62 -3.30 -0.04 -20.69 16 16 C 0.51 17.27 7.62 87.24 0.66 17.94 16 17 O -0.52 -20.01 14.14 -3.34 -0.05 -20.06 16 18 N -0.63 -16.71 5.32 -304.88 -1.62 -18.34 16 19 C 0.17 4.20 6.28 38.20 0.24 4.44 16 20 C -0.18 -3.10 9.96 22.42 0.22 -2.88 16 21 C -0.05 -0.72 10.03 22.24 0.22 -0.50 16 22 C -0.22 -3.67 8.24 22.40 0.18 -3.48 16 23 C 0.14 3.36 6.60 22.49 0.15 3.51 16 24 O -0.33 -8.09 9.80 -92.36 -0.90 -8.99 16 25 C 0.07 0.98 2.85 30.59 0.09 1.06 16 26 C -0.15 -1.88 9.56 71.98 0.69 -1.20 16 27 C -0.18 -1.92 9.17 71.98 0.66 -1.26 16 28 C -0.19 -5.48 8.59 22.50 0.19 -5.29 16 29 H 0.04 1.63 5.63 -2.39 -0.01 1.62 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.93 7.89 -2.39 -0.02 1.91 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 2.74 5.48 -2.39 -0.01 2.73 16 34 H 0.26 15.78 8.73 -92.71 -0.81 14.97 16 35 H 0.41 16.97 7.99 -92.71 -0.74 16.22 16 36 H 0.43 9.42 8.29 -92.71 -0.77 8.65 16 37 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 39 H 0.16 1.70 5.41 -2.91 -0.02 1.68 16 40 H 0.09 1.02 6.31 -2.39 -0.02 1.01 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.71 6.90 -2.38 -0.02 0.69 16 45 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.11 3.88 6.38 -2.91 -0.02 3.86 16 Total: -1.00 -69.45 379.87 2.02 -67.43 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: -0.63 Total: 35.33 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 5.41 Total: 0.08 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -3.58 Total: -103.53 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -1.00 Total: -49.74 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 1.81 Total: 50.44 kcal Total: -69.45 2.02 -67.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297017242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.276 kcal (2) G-P(sol) polarization free energy of solvation -69.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds