Wall clock time and date at job start Tue Mar 31 2020 18:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 N 1.46502 * 109.46930 * 180.02562 * 3 2 1 5 5 C 1.46506 * 119.99789 * 274.47241 * 4 3 2 6 6 C 1.53004 * 109.47127 * 262.08499 * 5 4 3 7 7 C 1.52995 * 109.46876 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00460 * 94.47188 * 4 3 2 9 9 O 1.21359 * 119.99639 * 1.51141 * 8 4 3 10 10 C 1.49351 * 120.00089 * 181.50611 * 8 4 3 11 11 O 1.21370 * 119.99849 * 2.90542 * 10 8 4 12 12 N 1.34778 * 119.99484 * 182.90839 * 10 8 4 13 13 C 1.39727 * 119.99754 * 176.39202 * 12 10 8 14 14 C 1.39024 * 120.03678 * 35.97714 * 13 12 10 15 15 C 1.38146 * 120.05908 * 180.02562 * 14 13 12 16 16 C 1.38183 * 120.14391 * 359.71859 * 15 14 13 17 17 C 1.38922 * 120.07874 * 0.55295 * 16 15 14 18 18 O 1.35756 * 120.02739 * 179.71804 * 17 16 15 19 19 C 1.34831 * 116.99474 * 173.76946 * 18 17 16 20 20 H 1.07997 * 120.00442 * 5.17288 * 19 18 17 21 21 C 1.38655 * 119.99699 * 185.16818 * 19 18 17 22 22 N 1.31563 * 119.99919 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00064 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47164 * 89.99822 * 23 21 19 25 25 H 1.48496 * 109.47239 * 210.00041 * 23 21 19 26 26 H 1.48500 * 109.47069 * 329.99972 * 23 21 19 27 27 C 1.38759 * 119.94136 * 359.45170 * 17 16 15 28 28 H 1.09005 * 109.47221 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47172 * 300.00182 * 1 2 3 30 30 H 1.08996 * 109.46725 * 60.00376 * 1 2 3 31 31 H 1.09004 * 109.47162 * 239.99598 * 2 1 3 32 32 H 1.09000 * 109.46590 * 120.00126 * 2 1 3 33 33 H 1.08999 * 109.47013 * 59.99860 * 3 2 1 34 34 H 1.09004 * 109.46827 * 299.99670 * 3 2 1 35 35 H 1.08999 * 109.46641 * 22.08463 * 5 4 3 36 36 H 1.08999 * 109.47192 * 142.08394 * 5 4 3 37 37 H 1.08995 * 109.46737 * 299.99944 * 6 5 4 38 38 H 1.08999 * 109.47171 * 59.99881 * 6 5 4 39 39 H 1.08999 * 109.47399 * 300.00111 * 7 6 5 40 40 H 1.08999 * 109.47192 * 60.00048 * 7 6 5 41 41 H 1.08997 * 109.46943 * 180.02562 * 7 6 5 42 42 H 0.96992 * 120.00477 * 356.38608 * 12 10 8 43 43 H 1.07994 * 119.97341 * 359.97438 * 14 13 12 44 44 H 1.08001 * 119.92692 * 179.97438 * 15 14 13 45 45 H 1.07998 * 119.96198 * 180.28333 * 16 15 14 46 46 H 0.96999 * 120.00002 * 179.97438 * 22 21 19 47 47 H 1.07995 * 120.07278 * 180.25130 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2381 1.3433 1.2640 6 6 4.6653 2.7410 1.7168 7 6 5.4302 2.6374 3.0377 8 6 4.1786 1.5336 -1.1645 9 8 3.5717 1.6433 -2.2097 10 6 5.6717 1.4997 -1.1679 11 8 6.2773 1.3371 -0.1287 12 7 6.3464 1.6497 -2.3249 13 6 7.7430 1.6935 -2.3186 14 6 8.4599 0.9055 -1.4254 15 6 9.8407 0.9489 -1.4184 16 6 10.5136 1.7707 -2.3023 17 6 9.8029 2.5648 -3.1935 18 8 10.4650 3.3760 -4.0575 19 6 9.7241 4.0217 -4.9807 20 1 8.6470 3.9475 -4.9568 21 6 10.3452 4.7809 -5.9606 22 7 9.6223 5.4105 -6.8617 23 14 12.2083 4.9087 -6.0023 24 1 12.7605 3.8191 -6.8467 25 1 12.6018 6.2230 -6.5705 26 1 12.7439 4.7856 -4.6227 27 6 8.4160 2.5240 -3.2035 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8901 35 1 3.5953 0.8963 2.0224 36 1 5.1218 0.7208 1.1239 37 1 5.3080 3.1878 0.9584 38 1 3.7816 3.3635 1.8569 39 1 4.7872 2.1906 3.7960 40 1 6.3139 2.0148 2.8980 41 1 5.7342 3.6331 3.3605 42 1 5.8626 1.7271 -3.1620 43 1 7.9370 0.2595 -0.7359 44 1 10.3955 0.3361 -0.7233 45 1 11.5932 1.7989 -2.2973 46 1 10.0568 5.9419 -7.5470 47 1 7.8615 3.1374 -3.8982 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298980317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:03 Heat of formation + Delta-G solvation = -64.070334 kcal Electronic energy + Delta-G solvation = -28763.894371 eV Core-core repulsion = 24720.088250 eV Total energy + Delta-G solvation = -4043.806121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.17797 -39.54515 -38.55091 -37.15343 -36.52567 -34.59235 -34.20166 -32.39414 -32.37801 -29.66240 -29.02141 -27.47084 -26.52214 -25.29705 -24.19952 -22.22407 -22.06358 -21.85369 -20.88035 -19.76913 -18.24634 -17.90952 -17.47675 -17.02762 -16.15737 -15.77311 -15.61307 -15.35088 -15.04252 -14.87450 -14.67273 -14.30727 -14.11755 -13.86451 -13.71187 -13.55909 -13.31844 -13.17275 -12.61018 -12.42180 -12.37813 -12.34424 -12.21430 -12.12526 -11.78029 -11.68086 -11.48693 -11.33110 -11.08110 -11.01667 -10.97832 -10.85995 -10.78606 -10.29833 -9.89678 -9.54216 -9.32246 -8.97090 -8.88604 -7.91744 -7.39264 -6.44705 -4.12581 1.19363 1.97881 2.17771 2.28800 3.15023 3.20521 3.24405 3.36024 3.38740 4.20731 4.23283 4.43977 4.59701 4.60594 4.74411 4.80695 4.89795 4.92522 5.06178 5.08333 5.17916 5.24546 5.34303 5.42633 5.51406 5.58193 5.66099 5.69358 5.75819 5.81814 5.83602 5.86188 5.94879 6.00198 6.05532 6.09408 6.18540 6.26000 6.39336 6.70701 6.75717 6.90182 7.08773 7.11648 7.33776 7.54477 7.64761 7.74369 7.96209 8.02116 8.90136 9.50807 10.62774 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016290 B = 0.002630 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.475430 B =10642.189320 C =11452.966249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.110 3.890 4 N -0.584 5.584 5 C 0.092 3.908 6 C -0.133 4.133 7 C -0.144 4.144 8 C 0.509 3.491 9 O -0.518 6.518 10 C 0.504 3.496 11 O -0.494 6.494 12 N -0.636 5.636 13 C 0.171 3.829 14 C -0.194 4.194 15 C -0.066 4.066 16 C -0.195 4.195 17 C 0.173 3.827 18 O -0.214 6.214 19 C -0.392 4.392 20 H 0.106 0.894 21 C 0.064 3.936 22 N -0.878 5.878 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.237 4.237 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.420 0.580 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.280 0.720 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.511 -9.699 16.959 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.012 4.012 4 N -0.317 5.317 5 C -0.030 4.030 6 C -0.172 4.172 7 C -0.202 4.202 8 C 0.291 3.709 9 O -0.394 6.394 10 C 0.286 3.714 11 O -0.369 6.369 12 N -0.281 5.281 13 C 0.078 3.922 14 C -0.215 4.215 15 C -0.085 4.085 16 C -0.214 4.214 17 C 0.120 3.880 18 O -0.118 6.118 19 C -0.467 4.467 20 H 0.123 0.877 21 C -0.139 4.139 22 N -0.516 5.516 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.258 4.258 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.257 0.743 43 H 0.143 0.857 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.090 0.910 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.223 -9.524 16.917 23.489 hybrid contribution 0.264 0.350 -0.614 0.754 sum -12.959 -9.174 16.303 22.757 Atomic orbital electron populations 1.21688 0.94849 1.02077 1.02063 1.21890 0.96387 0.96800 1.02741 1.21692 0.78219 0.97501 1.03830 1.47861 1.06849 1.70416 1.06567 1.22333 0.98089 0.99040 0.83520 1.21828 1.00075 0.96744 0.98518 1.21619 1.00495 1.02012 0.96093 1.20106 0.88362 0.78140 0.84297 1.90773 1.69701 1.47853 1.31046 1.20063 0.88363 0.78608 0.84327 1.90660 1.69413 1.46182 1.30640 1.43156 1.05927 1.69105 1.09945 1.17412 0.80271 0.96432 0.98043 1.20691 0.93832 1.03669 1.03296 1.20542 0.93435 0.97419 0.97071 1.20301 0.99617 1.01420 1.00093 1.18787 0.89789 0.89271 0.90158 1.83602 1.36397 1.51917 1.39925 1.20741 0.92487 1.27557 1.05933 0.87692 1.24470 1.00319 0.95125 0.94015 1.69648 1.36472 1.30284 1.15161 0.86176 0.83531 0.77591 0.79589 1.19830 1.20778 1.18299 1.20978 0.94612 1.04618 1.05611 0.92351 0.92570 0.92330 0.91458 0.91686 0.90140 0.89219 0.90852 0.86424 0.91396 0.92605 0.93077 0.91875 0.92657 0.74309 0.85725 0.86285 0.86255 0.90992 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.14 -1.06 6.26 -26.73 -0.17 -1.23 16 3 C 0.11 0.95 5.43 -4.04 -0.02 0.92 16 4 N -0.58 -6.28 2.49 -174.23 -0.43 -6.71 16 5 C 0.09 0.87 5.02 -4.04 -0.02 0.85 16 6 C -0.13 -1.33 5.73 -26.73 -0.15 -1.48 16 7 C -0.14 -1.27 9.91 37.15 0.37 -0.90 16 8 C 0.51 6.93 7.67 -11.63 -0.09 6.84 16 9 O -0.52 -8.07 15.98 5.49 0.09 -7.98 16 10 C 0.50 7.48 7.30 -11.63 -0.08 7.39 16 11 O -0.49 -7.46 9.43 5.48 0.05 -7.41 16 12 N -0.64 -10.12 5.32 -10.31 -0.05 -10.18 16 13 C 0.17 3.14 6.27 -83.77 -0.53 2.62 16 14 C -0.19 -3.37 8.68 -39.32 -0.34 -3.71 16 15 C -0.07 -1.11 10.03 -39.64 -0.40 -1.50 16 16 C -0.19 -3.75 9.99 -39.35 -0.39 -4.14 16 17 C 0.17 3.90 6.64 -39.14 -0.26 3.64 16 18 O -0.21 -5.52 8.58 0.03 0.00 -5.52 16 19 C -0.39 -10.86 9.95 30.89 0.31 -10.55 16 20 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 21 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 22 N -0.88 -25.15 13.96 55.48 0.77 -24.37 16 23 Si 0.91 21.41 28.62 -169.99 -4.86 16.55 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 27 C -0.24 -5.01 9.08 -39.19 -0.36 -5.36 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 34 H 0.09 0.89 7.27 -51.93 -0.38 0.51 16 35 H 0.07 0.53 8.01 -51.93 -0.42 0.11 16 36 H 0.12 1.29 5.39 -51.94 -0.28 1.01 16 37 H 0.07 0.86 6.91 -51.93 -0.36 0.51 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.42 6.23 8.29 -40.82 -0.34 5.89 16 43 H 0.12 2.04 6.32 -52.49 -0.33 1.71 16 44 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 46 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.14 3.05 5.64 -52.49 -0.30 2.76 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -30.14 388.17 -7.34 -37.48 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.89 Total: 7.76 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.86 Total: -5.47 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.29 Total: -41.26 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.14 Total: -20.91 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.86 Total: 16.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.14 -7.34 -37.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298980317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.589 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds