Wall clock time and date at job start Tue Mar 31 2020 18:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 N 1.46502 * 109.46930 * 180.02562 * 3 2 1 5 5 C 1.46506 * 119.99789 * 274.47241 * 4 3 2 6 6 C 1.53004 * 109.47127 * 262.08499 * 5 4 3 7 7 C 1.52995 * 109.46876 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00460 * 94.47188 * 4 3 2 9 9 O 1.21359 * 119.99639 * 1.51141 * 8 4 3 10 10 C 1.49351 * 120.00089 * 181.50611 * 8 4 3 11 11 O 1.21370 * 119.99849 * 2.90542 * 10 8 4 12 12 N 1.34778 * 119.99484 * 182.90839 * 10 8 4 13 13 C 1.39727 * 119.99754 * 176.39202 * 12 10 8 14 14 C 1.39024 * 120.03678 * 35.97714 * 13 12 10 15 15 C 1.38146 * 120.05908 * 180.02562 * 14 13 12 16 16 C 1.38183 * 120.14391 * 359.71859 * 15 14 13 17 17 C 1.38922 * 120.07874 * 0.55295 * 16 15 14 18 18 O 1.35756 * 120.02739 * 179.71804 * 17 16 15 19 19 C 1.34831 * 116.99474 * 173.76946 * 18 17 16 20 20 H 1.07997 * 120.00442 * 5.17288 * 19 18 17 21 21 C 1.38655 * 119.99699 * 185.16818 * 19 18 17 22 22 N 1.31563 * 119.99919 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00064 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47164 * 89.99822 * 23 21 19 25 25 H 1.48496 * 109.47239 * 210.00041 * 23 21 19 26 26 H 1.48500 * 109.47069 * 329.99972 * 23 21 19 27 27 C 1.38759 * 119.94136 * 359.45170 * 17 16 15 28 28 H 1.09005 * 109.47221 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47172 * 300.00182 * 1 2 3 30 30 H 1.08996 * 109.46725 * 60.00376 * 1 2 3 31 31 H 1.09004 * 109.47162 * 239.99598 * 2 1 3 32 32 H 1.09000 * 109.46590 * 120.00126 * 2 1 3 33 33 H 1.08999 * 109.47013 * 59.99860 * 3 2 1 34 34 H 1.09004 * 109.46827 * 299.99670 * 3 2 1 35 35 H 1.08999 * 109.46641 * 22.08463 * 5 4 3 36 36 H 1.08999 * 109.47192 * 142.08394 * 5 4 3 37 37 H 1.08995 * 109.46737 * 299.99944 * 6 5 4 38 38 H 1.08999 * 109.47171 * 59.99881 * 6 5 4 39 39 H 1.08999 * 109.47399 * 300.00111 * 7 6 5 40 40 H 1.08999 * 109.47192 * 60.00048 * 7 6 5 41 41 H 1.08997 * 109.46943 * 180.02562 * 7 6 5 42 42 H 0.96992 * 120.00477 * 356.38608 * 12 10 8 43 43 H 1.07994 * 119.97341 * 359.97438 * 14 13 12 44 44 H 1.08001 * 119.92692 * 179.97438 * 15 14 13 45 45 H 1.07998 * 119.96198 * 180.28333 * 16 15 14 46 46 H 0.96999 * 120.00002 * 179.97438 * 22 21 19 47 47 H 1.07995 * 120.07278 * 180.25130 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2381 1.3433 1.2640 6 6 4.6653 2.7410 1.7168 7 6 5.4302 2.6374 3.0377 8 6 4.1786 1.5336 -1.1645 9 8 3.5717 1.6433 -2.2097 10 6 5.6717 1.4997 -1.1679 11 8 6.2773 1.3371 -0.1287 12 7 6.3464 1.6497 -2.3249 13 6 7.7430 1.6935 -2.3186 14 6 8.4599 0.9055 -1.4254 15 6 9.8407 0.9489 -1.4184 16 6 10.5136 1.7707 -2.3023 17 6 9.8029 2.5648 -3.1935 18 8 10.4650 3.3760 -4.0575 19 6 9.7241 4.0217 -4.9807 20 1 8.6470 3.9475 -4.9568 21 6 10.3452 4.7809 -5.9606 22 7 9.6223 5.4105 -6.8617 23 14 12.2083 4.9087 -6.0023 24 1 12.7605 3.8191 -6.8467 25 1 12.6018 6.2230 -6.5705 26 1 12.7439 4.7856 -4.6227 27 6 8.4160 2.5240 -3.2035 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8901 35 1 3.5953 0.8963 2.0224 36 1 5.1218 0.7208 1.1239 37 1 5.3080 3.1878 0.9584 38 1 3.7816 3.3635 1.8569 39 1 4.7872 2.1906 3.7960 40 1 6.3139 2.0148 2.8980 41 1 5.7342 3.6331 3.3605 42 1 5.8626 1.7271 -3.1620 43 1 7.9370 0.2595 -0.7359 44 1 10.3955 0.3361 -0.7233 45 1 11.5932 1.7989 -2.2973 46 1 10.0568 5.9419 -7.5470 47 1 7.8615 3.1374 -3.8982 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298980317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:02 Heat of formation + Delta-G solvation = -81.784142 kcal Electronic energy + Delta-G solvation = -28764.662500 eV Core-core repulsion = 24720.088250 eV Total energy + Delta-G solvation = -4044.574250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.35683 -41.00567 -39.95440 -38.40350 -37.81418 -35.75973 -35.08813 -34.41731 -33.16747 -31.19063 -30.59446 -28.28346 -27.47694 -27.17060 -25.27553 -23.45628 -23.21478 -22.87474 -22.03173 -20.98793 -19.86270 -19.48124 -18.83641 -18.13426 -17.27643 -17.11835 -16.97980 -16.73067 -16.16009 -16.03538 -15.72765 -15.63975 -15.54030 -15.25466 -15.18566 -14.72366 -14.34296 -14.25562 -14.21669 -14.00845 -13.41800 -13.32313 -13.07954 -13.01192 -12.94524 -12.73325 -12.64971 -12.48431 -12.37184 -12.27228 -12.07783 -12.05678 -11.71544 -11.63250 -11.50172 -11.27528 -10.86580 -10.46235 -9.89578 -9.46310 -9.02048 -8.50714 -6.24498 -0.05687 0.55395 0.64769 1.13816 1.32813 1.36879 1.53237 1.97467 2.27200 2.29565 2.74906 3.00553 3.09804 3.12691 3.90974 3.95822 4.03045 4.07077 4.15817 4.26540 4.30892 4.35571 4.42452 4.48749 4.52272 4.55900 4.57597 4.70376 4.82454 4.86712 4.89562 4.96672 5.11543 5.13924 5.16329 5.20171 5.26624 5.29890 5.35197 5.38374 5.45256 5.48152 5.59389 5.72693 5.81721 5.90426 6.10328 6.17963 6.53144 6.76783 6.83224 7.55149 8.60756 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016290 B = 0.002630 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.475430 B =10642.189320 C =11452.966249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.105 3.895 4 N -0.572 5.572 5 C 0.091 3.909 6 C -0.131 4.131 7 C -0.140 4.140 8 C 0.507 3.493 9 O -0.545 6.545 10 C 0.505 3.495 11 O -0.494 6.494 12 N -0.641 5.641 13 C 0.173 3.827 14 C -0.181 4.181 15 C -0.050 4.050 16 C -0.193 4.193 17 C 0.139 3.861 18 O -0.238 6.238 19 C -0.400 4.400 20 H 0.080 0.920 21 C 0.010 3.990 22 N -0.923 5.923 23 Si 0.972 3.028 24 H -0.264 1.264 25 H -0.269 1.269 26 H -0.260 1.260 27 C -0.252 4.252 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.033 0.967 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.422 0.578 43 H 0.144 0.856 44 H 0.167 0.833 45 H 0.138 0.862 46 H 0.285 0.715 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.622 -11.576 20.418 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.016 4.016 4 N -0.303 5.303 5 C -0.030 4.030 6 C -0.169 4.169 7 C -0.198 4.198 8 C 0.289 3.711 9 O -0.424 6.424 10 C 0.288 3.712 11 O -0.368 6.368 12 N -0.287 5.287 13 C 0.079 3.921 14 C -0.201 4.201 15 C -0.068 4.068 16 C -0.213 4.213 17 C 0.089 3.911 18 O -0.145 6.145 19 C -0.477 4.477 20 H 0.097 0.903 21 C -0.188 4.188 22 N -0.564 5.564 23 Si 0.794 3.206 24 H -0.189 1.189 25 H -0.194 1.194 26 H -0.184 1.184 27 C -0.274 4.274 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.259 0.741 43 H 0.161 0.839 44 H 0.184 0.816 45 H 0.156 0.844 46 H 0.094 0.906 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.374 -11.435 20.446 26.975 hybrid contribution 0.093 0.740 -1.396 1.583 sum -13.281 -10.695 19.050 25.567 Atomic orbital electron populations 1.21672 0.93551 1.02629 1.02534 1.21839 0.97440 0.95691 1.02273 1.21933 0.76563 0.98540 1.04535 1.48014 1.07873 1.68380 1.06048 1.22423 0.98358 0.98709 0.83467 1.21795 1.00032 0.96898 0.98208 1.21590 1.00345 1.01966 0.95927 1.19892 0.87600 0.78632 0.84988 1.90768 1.69790 1.49676 1.32129 1.20352 0.89107 0.77970 0.83758 1.90656 1.69774 1.45953 1.30448 1.43194 1.05131 1.69596 1.10751 1.17476 0.81481 0.95703 0.97415 1.21065 0.94422 1.02413 1.02247 1.21051 0.93247 0.96201 0.96306 1.20643 1.00689 1.00649 0.99283 1.19357 0.90652 0.90281 0.90814 1.83546 1.36359 1.53743 1.40852 1.20676 0.91806 1.28217 1.06957 0.90282 1.25303 1.05058 0.94852 0.93617 1.69736 1.38361 1.31902 1.16367 0.85200 0.77735 0.78247 0.79460 1.18930 1.19399 1.18409 1.20918 0.94579 1.05503 1.06368 0.91790 0.90955 0.93028 0.93712 0.90329 0.87152 0.90793 0.87312 0.87705 0.94780 0.91460 0.90688 0.92957 0.92826 0.74059 0.83866 0.81572 0.84438 0.90553 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.13 -1.76 6.26 30.60 0.19 -1.56 16 3 C 0.11 1.60 5.43 86.38 0.47 2.07 16 4 N -0.57 -11.35 2.49 -823.49 -2.05 -13.41 16 5 C 0.09 1.49 5.02 86.38 0.43 1.92 16 6 C -0.13 -2.35 5.73 30.59 0.18 -2.17 16 7 C -0.14 -2.12 9.91 71.98 0.71 -1.40 16 8 C 0.51 13.71 7.67 87.24 0.67 14.38 16 9 O -0.55 -17.37 15.98 -3.27 -0.05 -17.42 16 10 C 0.51 14.83 7.30 87.24 0.64 15.47 16 11 O -0.49 -14.25 9.43 -3.31 -0.03 -14.28 16 12 N -0.64 -20.81 5.32 -304.89 -1.62 -22.43 16 13 C 0.17 6.37 6.27 38.20 0.24 6.61 16 14 C -0.18 -5.86 8.68 22.44 0.19 -5.66 16 15 C -0.05 -1.50 10.03 22.23 0.22 -1.28 16 16 C -0.19 -7.12 9.99 22.42 0.22 -6.90 16 17 C 0.14 6.41 6.64 22.56 0.15 6.56 16 18 O -0.24 -12.73 8.58 -22.81 -0.20 -12.93 16 19 C -0.40 -23.48 9.95 67.92 0.68 -22.80 16 20 H 0.08 4.88 5.44 -2.91 -0.02 4.87 16 21 C 0.01 0.59 5.49 84.83 0.47 1.06 16 22 N -0.92 -55.28 13.96 21.61 0.30 -54.98 16 23 Si 0.97 45.11 28.62 68.60 1.96 47.07 16 24 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 27 C -0.25 -11.17 9.08 22.52 0.20 -10.96 16 28 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 1.06 8.11 -2.39 -0.02 1.04 16 34 H 0.07 1.40 7.27 -2.38 -0.02 1.39 16 35 H 0.11 1.07 8.01 -2.39 -0.02 1.05 16 36 H 0.11 2.05 5.39 -2.47 -0.01 2.04 16 37 H 0.03 0.84 6.91 -2.39 -0.02 0.82 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 42 H 0.42 13.25 8.29 -92.71 -0.77 12.48 16 43 H 0.14 4.19 6.32 -2.91 -0.02 4.17 16 44 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 45 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 46 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 47 H 0.11 5.53 5.64 -2.91 -0.02 5.51 16 Total: -1.00 -69.12 388.17 4.91 -64.21 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.22 Total: 29.59 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 6.38 Total: -5.43 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -3.37 Total: -90.82 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -0.28 Total: -44.63 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.96 Total: 47.07 kcal Total: -69.12 4.91 -64.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298980317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.573 kcal (2) G-P(sol) polarization free energy of solvation -69.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds