Wall clock time and date at job start Tue Mar 31 2020 17:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47375 * 2 1 4 4 H 1.09000 * 109.70497 * 52.63727 * 3 2 1 5 5 C 1.52764 * 109.50932 * 292.51855 * 3 2 1 6 6 C 1.53037 * 109.38553 * 185.70512 * 5 3 2 7 7 C 1.53045 * 109.53874 * 61.23881 * 6 5 3 8 8 C 1.53189 * 109.31171 * 298.63787 * 7 6 5 9 9 N 1.46922 * 108.77703 * 54.63442 * 8 7 6 10 10 S 1.65603 * 120.63653 * 126.36788 * 9 8 7 11 11 O 1.42107 * 106.39752 * 344.62319 * 10 9 8 12 12 O 1.42088 * 106.40518 * 211.70128 * 10 9 8 13 13 N 1.65597 * 107.22106 * 98.15641 * 10 9 8 14 14 C 1.46498 * 120.00077 * 96.47411 * 13 10 9 15 15 C 1.50707 * 109.47254 * 258.31626 * 14 13 10 16 16 H 1.07998 * 119.99656 * 355.14758 * 15 14 13 17 17 C 1.37879 * 119.99770 * 175.41949 * 15 14 13 18 18 N 1.31517 * 120.00225 * 359.72450 * 17 15 14 19 19 Si 1.86796 * 119.99643 * 179.72561 * 17 15 14 20 20 H 1.48500 * 109.47503 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47039 * 120.00479 * 19 17 15 22 22 H 1.48510 * 109.46880 * 239.99919 * 19 17 15 23 23 C 1.46500 * 120.00248 * 276.47836 * 13 10 9 24 24 C 1.53004 * 109.47258 * 264.99755 * 23 13 10 25 25 O 1.42904 * 109.46851 * 64.99646 * 24 23 13 26 26 C 1.42899 * 113.99532 * 180.02562 * 25 24 23 27 27 H 1.08999 * 109.47079 * 65.39400 * 1 2 3 28 28 H 1.09000 * 109.47286 * 185.40075 * 1 2 3 29 29 H 1.09001 * 109.46954 * 305.39885 * 1 2 3 30 30 H 1.09005 * 109.47116 * 240.00057 * 2 1 3 31 31 H 1.09000 * 109.47250 * 119.99765 * 2 1 3 32 32 H 1.09007 * 109.56280 * 65.66621 * 5 3 2 33 33 H 1.09001 * 109.36341 * 305.61768 * 5 3 2 34 34 H 1.09007 * 109.45834 * 301.21823 * 6 5 3 35 35 H 1.08996 * 109.46394 * 181.26473 * 6 5 3 36 36 H 1.08997 * 109.49494 * 178.68225 * 7 6 5 37 37 H 1.08998 * 109.49347 * 58.58767 * 7 6 5 38 38 H 1.09000 * 109.58968 * 294.84264 * 8 7 6 39 39 H 1.09001 * 109.58340 * 174.41686 * 8 7 6 40 40 H 1.09000 * 109.47476 * 138.31385 * 14 13 10 41 41 H 1.09004 * 109.46844 * 18.31575 * 14 13 10 42 42 H 0.96996 * 120.00192 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.47354 * 25.00019 * 23 13 10 44 44 H 1.09002 * 109.47115 * 144.99806 * 23 13 10 45 45 H 1.08996 * 109.46957 * 184.99851 * 24 23 13 46 46 H 1.09004 * 109.46686 * 305.00140 * 24 23 13 47 47 H 1.09006 * 109.46606 * 180.02562 * 26 25 24 48 48 H 1.09003 * 109.47419 * 300.00138 * 26 25 24 49 49 H 1.08997 * 109.46957 * 60.00694 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5755 1.9966 0.8156 5 6 1.6902 2.1073 -1.3301 6 6 2.3235 3.4995 -1.3843 7 6 3.8458 3.3733 -1.2910 8 6 4.2195 2.7237 0.0451 9 7 3.4996 1.4489 0.1688 10 16 4.3183 0.0447 0.4858 11 8 5.6898 0.3131 0.2282 12 8 3.5956 -0.9953 -0.1582 13 7 4.1949 -0.2381 2.1128 14 6 3.1614 -1.1425 2.6228 15 6 2.0204 -0.3349 3.1859 16 1 2.0946 0.7413 3.2377 17 6 0.8843 -0.9704 3.6402 18 7 0.7940 -2.2809 3.5771 19 14 -0.5268 0.0302 4.3453 20 1 -0.1790 1.4733 4.3052 21 1 -1.7522 -0.2068 3.5406 22 1 -0.7708 -0.3808 5.7514 23 6 5.1192 0.4161 3.0423 24 6 6.2922 -0.5204 3.3389 25 8 7.0457 -0.7333 2.1435 26 6 8.1700 -1.5992 2.3117 27 1 -0.3633 0.4279 -0.9343 28 1 -0.3634 -1.0231 0.0967 29 1 -0.3633 0.5953 0.8377 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.6075 2.1963 -1.4201 33 1 2.0751 1.5005 -2.1497 34 1 1.9569 4.0978 -0.5501 35 1 2.0560 3.9838 -2.3233 36 1 4.2974 4.3633 -1.3532 37 1 4.2104 2.7545 -2.1109 38 1 3.9362 3.3843 0.8645 39 1 5.2936 2.5411 0.0748 40 1 3.5833 -1.7712 3.4069 41 1 2.7956 -1.7709 1.8107 42 1 -0.0054 -2.7280 3.8963 43 1 5.4935 1.3368 2.5947 44 1 4.5969 0.6494 3.9701 45 1 6.9332 -0.0709 4.0972 46 1 5.9120 -1.4746 3.7036 47 1 8.6893 -1.7094 1.3596 48 1 8.8502 -1.1725 3.0489 49 1 7.8284 -2.5757 2.6548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330369851.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:43 Heat of formation + Delta-G solvation = -115.816656 kcal Electronic energy + Delta-G solvation = -30833.164348 eV Core-core repulsion = 26922.558289 eV Total energy + Delta-G solvation = -3910.606059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.56856 -37.66871 -36.70461 -35.39838 -34.94776 -33.29207 -32.55579 -32.04057 -29.43402 -28.91960 -26.70033 -25.73119 -24.05454 -23.71113 -22.98140 -21.46243 -20.78498 -20.18564 -18.07303 -17.01401 -16.67389 -16.25786 -16.12267 -15.52922 -15.31542 -14.90573 -14.48100 -14.38291 -14.27206 -13.99089 -13.82666 -13.43580 -13.21533 -12.78456 -12.67393 -12.49379 -12.32627 -12.07474 -11.82641 -11.66933 -11.42344 -11.35729 -11.19448 -11.08463 -11.06469 -10.94476 -10.83551 -10.80333 -10.64878 -10.56577 -10.41820 -10.16954 -10.02393 -9.74568 -9.55860 -9.27682 -9.23658 -8.54238 -8.44804 -7.97400 -6.10953 -4.16287 1.45714 3.22608 3.32128 3.33512 3.62966 4.23816 4.28030 4.36799 4.94173 5.00240 5.04770 5.22458 5.22825 5.41425 5.43990 5.46946 5.51550 5.56493 5.63199 5.66764 5.73264 5.75790 5.89009 5.91746 5.95313 5.97144 6.00466 6.08930 6.18519 6.21587 6.25399 6.29292 6.30821 6.40097 6.55520 6.59992 6.77024 6.84204 7.11184 7.17621 7.29760 7.44795 7.54679 7.58069 7.72859 7.87390 8.15788 8.88350 9.48997 10.96583 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009147 B = 0.007642 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.485433 B = 3663.123249 C = 5742.918216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.167 4.167 3 C 0.165 3.835 4 H 0.069 0.931 5 C -0.129 4.129 6 C -0.117 4.117 7 C -0.130 4.130 8 C 0.119 3.881 9 N -1.004 6.004 10 S 2.779 3.221 11 O -0.977 6.977 12 O -0.978 6.978 13 N -0.989 5.989 14 C 0.241 3.759 15 C -0.532 4.532 16 H 0.062 0.938 17 C 0.069 3.931 18 N -0.886 5.886 19 Si 0.885 3.115 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.285 1.285 23 C 0.141 3.859 24 C 0.037 3.963 25 O -0.364 6.364 26 C 0.031 3.969 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.029 0.971 41 H 0.059 0.941 42 H 0.263 0.737 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.080 0.920 48 H 0.033 0.967 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.408 8.712 -4.652 11.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.205 4.205 3 C 0.059 3.941 4 H 0.088 0.912 5 C -0.168 4.168 6 C -0.154 4.154 7 C -0.169 4.169 8 C -0.008 4.008 9 N -0.843 5.843 10 S 2.790 3.210 11 O -0.961 6.961 12 O -0.962 6.962 13 N -0.829 5.829 14 C 0.119 3.881 15 C -0.572 4.572 16 H 0.081 0.919 17 C -0.134 4.134 18 N -0.524 5.524 19 Si 0.712 3.288 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.211 1.211 23 C 0.013 3.987 24 C -0.042 4.042 25 O -0.283 6.283 26 C -0.066 4.066 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.099 0.901 48 H 0.052 0.948 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.707 8.080 -5.404 11.810 hybrid contribution -1.057 0.616 1.162 1.687 sum 5.650 8.696 -4.242 11.204 Atomic orbital electron populations 1.21620 0.96089 1.01792 0.99819 1.22774 0.96249 0.93875 1.07553 1.20891 0.78593 0.98236 0.96348 0.91247 1.21925 1.00467 0.95998 0.98419 1.21483 0.95300 0.97310 1.01326 1.21853 0.96528 1.00426 0.98111 1.21331 0.96935 0.85397 0.97097 1.58345 1.16181 1.23293 1.86473 1.02079 0.72379 0.73034 0.73518 1.93566 1.32493 1.85328 1.84683 1.93644 1.72734 1.55934 1.73934 1.57759 1.42791 1.58219 1.24151 1.19261 0.84139 0.88494 0.96240 1.21495 1.00367 0.93841 1.41457 0.91944 1.24885 0.98148 0.94716 0.95640 1.69939 1.28585 1.07570 1.46338 0.86660 0.82721 0.80520 0.78858 1.19685 1.20716 1.21128 1.21003 0.87986 0.93675 0.95994 1.23126 0.93334 1.00194 0.87565 1.88198 1.40908 1.67138 1.32011 1.22684 0.89044 0.93301 1.01614 0.94248 0.92533 0.93197 0.89365 0.86369 0.91084 0.91797 0.92026 0.92385 0.91398 0.91764 0.92097 0.89157 0.95258 0.92283 0.92690 0.91427 0.88669 0.93321 0.92715 0.90133 0.94820 0.94607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.59 37.16 0.36 -2.14 16 2 C -0.17 -3.36 3.72 -26.73 -0.10 -3.46 16 3 C 0.17 2.87 2.94 -67.82 -0.20 2.67 16 4 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 5 C -0.13 -1.84 5.01 -26.83 -0.13 -1.98 16 6 C -0.12 -1.40 5.89 -26.69 -0.16 -1.56 16 7 C -0.13 -1.59 6.08 -26.61 -0.16 -1.75 16 8 C 0.12 1.70 6.51 -3.71 -0.02 1.67 16 9 N -1.00 -17.59 3.35 -106.71 -0.36 -17.95 16 10 S 2.78 57.25 5.59 -107.50 -0.60 56.65 16 11 O -0.98 -20.81 13.65 -65.79 -0.90 -21.71 16 12 O -0.98 -22.80 11.95 -57.17 -0.68 -23.48 16 13 N -0.99 -20.39 2.80 -115.66 -0.32 -20.71 16 14 C 0.24 5.78 4.68 -5.19 -0.02 5.75 16 15 C -0.53 -13.19 7.70 -34.44 -0.27 -13.45 16 16 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -24.34 13.29 55.43 0.74 -23.60 16 19 Si 0.88 20.11 29.54 -169.99 -5.02 15.09 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.14 2.44 5.79 -4.04 -0.02 2.42 16 24 C 0.04 0.60 6.28 37.16 0.23 0.83 16 25 O -0.36 -6.61 8.49 -55.96 -0.48 -7.09 16 26 C 0.03 0.43 11.01 101.05 1.11 1.54 16 27 H 0.04 0.60 7.04 -51.93 -0.37 0.24 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.85 6.38 -51.93 -0.33 1.52 16 31 H 0.12 2.74 2.19 -51.93 -0.11 2.63 16 32 H 0.07 0.93 7.05 -51.93 -0.37 0.56 16 33 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 34 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.31 6.75 -51.93 -0.35 0.96 16 40 H 0.03 0.74 8.01 -51.93 -0.42 0.32 16 41 H 0.06 1.58 5.81 -51.93 -0.30 1.28 16 42 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.07 1.07 7.79 -51.93 -0.40 0.67 16 44 H 0.10 1.58 8.03 -51.93 -0.42 1.16 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.92 8.01 -51.93 -0.42 0.51 16 47 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -30.31 379.64 -9.91 -40.22 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.52 Total: 4.61 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 0.52 Total: -7.74 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.06 Total: -62.27 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -2.06 Total: -52.28 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 57.25 SS G_CDS: -0.60 Total: 56.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.31 -9.91 -40.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330369851.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.596 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds