Wall clock time and date at job start Tue Mar 31 2020 17:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47375 * 2 1 4 4 H 1.09000 * 109.70497 * 52.63727 * 3 2 1 5 5 C 1.52764 * 109.50932 * 292.51855 * 3 2 1 6 6 C 1.53037 * 109.38553 * 185.70512 * 5 3 2 7 7 C 1.53045 * 109.53874 * 61.23881 * 6 5 3 8 8 C 1.53189 * 109.31171 * 298.63787 * 7 6 5 9 9 N 1.46922 * 108.77703 * 54.63442 * 8 7 6 10 10 S 1.65603 * 120.63653 * 126.36788 * 9 8 7 11 11 O 1.42107 * 106.39752 * 344.62319 * 10 9 8 12 12 O 1.42088 * 106.40518 * 211.70128 * 10 9 8 13 13 N 1.65597 * 107.22106 * 98.15641 * 10 9 8 14 14 C 1.46498 * 120.00077 * 96.47411 * 13 10 9 15 15 C 1.50707 * 109.47254 * 258.31626 * 14 13 10 16 16 H 1.07998 * 119.99656 * 355.14758 * 15 14 13 17 17 C 1.37879 * 119.99770 * 175.41949 * 15 14 13 18 18 N 1.31517 * 120.00225 * 359.72450 * 17 15 14 19 19 Si 1.86796 * 119.99643 * 179.72561 * 17 15 14 20 20 H 1.48500 * 109.47503 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47039 * 120.00479 * 19 17 15 22 22 H 1.48510 * 109.46880 * 239.99919 * 19 17 15 23 23 C 1.46500 * 120.00248 * 276.47836 * 13 10 9 24 24 C 1.53004 * 109.47258 * 264.99755 * 23 13 10 25 25 O 1.42904 * 109.46851 * 64.99646 * 24 23 13 26 26 C 1.42899 * 113.99532 * 180.02562 * 25 24 23 27 27 H 1.08999 * 109.47079 * 65.39400 * 1 2 3 28 28 H 1.09000 * 109.47286 * 185.40075 * 1 2 3 29 29 H 1.09001 * 109.46954 * 305.39885 * 1 2 3 30 30 H 1.09005 * 109.47116 * 240.00057 * 2 1 3 31 31 H 1.09000 * 109.47250 * 119.99765 * 2 1 3 32 32 H 1.09007 * 109.56280 * 65.66621 * 5 3 2 33 33 H 1.09001 * 109.36341 * 305.61768 * 5 3 2 34 34 H 1.09007 * 109.45834 * 301.21823 * 6 5 3 35 35 H 1.08996 * 109.46394 * 181.26473 * 6 5 3 36 36 H 1.08997 * 109.49494 * 178.68225 * 7 6 5 37 37 H 1.08998 * 109.49347 * 58.58767 * 7 6 5 38 38 H 1.09000 * 109.58968 * 294.84264 * 8 7 6 39 39 H 1.09001 * 109.58340 * 174.41686 * 8 7 6 40 40 H 1.09000 * 109.47476 * 138.31385 * 14 13 10 41 41 H 1.09004 * 109.46844 * 18.31575 * 14 13 10 42 42 H 0.96996 * 120.00192 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.47354 * 25.00019 * 23 13 10 44 44 H 1.09002 * 109.47115 * 144.99806 * 23 13 10 45 45 H 1.08996 * 109.46957 * 184.99851 * 24 23 13 46 46 H 1.09004 * 109.46686 * 305.00140 * 24 23 13 47 47 H 1.09006 * 109.46606 * 180.02562 * 26 25 24 48 48 H 1.09003 * 109.47419 * 300.00138 * 26 25 24 49 49 H 1.08997 * 109.46957 * 60.00694 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5755 1.9966 0.8156 5 6 1.6902 2.1073 -1.3301 6 6 2.3235 3.4995 -1.3843 7 6 3.8458 3.3733 -1.2910 8 6 4.2195 2.7237 0.0451 9 7 3.4996 1.4489 0.1688 10 16 4.3183 0.0447 0.4858 11 8 5.6898 0.3131 0.2282 12 8 3.5956 -0.9953 -0.1582 13 7 4.1949 -0.2381 2.1128 14 6 3.1614 -1.1425 2.6228 15 6 2.0204 -0.3349 3.1859 16 1 2.0946 0.7413 3.2377 17 6 0.8843 -0.9704 3.6402 18 7 0.7940 -2.2809 3.5771 19 14 -0.5268 0.0302 4.3453 20 1 -0.1790 1.4733 4.3052 21 1 -1.7522 -0.2068 3.5406 22 1 -0.7708 -0.3808 5.7514 23 6 5.1192 0.4161 3.0423 24 6 6.2922 -0.5204 3.3389 25 8 7.0457 -0.7333 2.1435 26 6 8.1700 -1.5992 2.3117 27 1 -0.3633 0.4279 -0.9343 28 1 -0.3634 -1.0231 0.0967 29 1 -0.3633 0.5953 0.8377 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.6075 2.1963 -1.4201 33 1 2.0751 1.5005 -2.1497 34 1 1.9569 4.0978 -0.5501 35 1 2.0560 3.9838 -2.3233 36 1 4.2974 4.3633 -1.3532 37 1 4.2104 2.7545 -2.1109 38 1 3.9362 3.3843 0.8645 39 1 5.2936 2.5411 0.0748 40 1 3.5833 -1.7712 3.4069 41 1 2.7956 -1.7709 1.8107 42 1 -0.0054 -2.7280 3.8963 43 1 5.4935 1.3368 2.5947 44 1 4.5969 0.6494 3.9701 45 1 6.9332 -0.0709 4.0972 46 1 5.9120 -1.4746 3.7036 47 1 8.6893 -1.7094 1.3596 48 1 8.8502 -1.1725 3.0489 49 1 7.8284 -2.5757 2.6548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330369851.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:42 Heat of formation + Delta-G solvation = -134.880787 kcal Electronic energy + Delta-G solvation = -30833.991031 eV Core-core repulsion = 26922.558289 eV Total energy + Delta-G solvation = -3911.432742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.83707 -39.01181 -38.34806 -37.00644 -36.64178 -34.69245 -34.41281 -33.25051 -30.96932 -30.19884 -28.42527 -27.00134 -25.38967 -24.89634 -24.72052 -22.99656 -22.20660 -21.31450 -19.63811 -18.55912 -18.50542 -17.83362 -17.58249 -16.97216 -16.66097 -16.45826 -15.95775 -15.80349 -15.49231 -15.29884 -15.06352 -14.95575 -14.53681 -14.36589 -14.21187 -13.94607 -13.64365 -13.59805 -13.30371 -13.22010 -12.97000 -12.86876 -12.76506 -12.74298 -12.52125 -12.45849 -12.34611 -12.06232 -12.02757 -11.94024 -11.75148 -11.65156 -11.53874 -11.33454 -11.16425 -10.77695 -10.52666 -10.49230 -9.84575 -9.62683 -8.09853 -6.20812 -0.13493 1.42563 1.46268 1.55318 2.11441 2.46508 2.72503 3.01539 3.22901 3.57904 3.71186 3.95994 4.06230 4.12028 4.22527 4.23801 4.30225 4.32008 4.47661 4.50325 4.56384 4.56885 4.60468 4.62408 4.76028 4.80877 4.84756 4.91511 4.94127 4.97098 5.00333 5.03988 5.12467 5.20886 5.25540 5.33519 5.35265 5.44710 5.49361 5.55268 5.63398 5.75529 5.80968 5.91172 6.11324 6.17912 6.39385 6.89280 7.47778 8.98302 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009147 B = 0.007642 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.485433 B = 3663.123249 C = 5742.918216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.171 4.171 3 C 0.166 3.834 4 H 0.071 0.929 5 C -0.127 4.127 6 C -0.112 4.112 7 C -0.128 4.128 8 C 0.109 3.891 9 N -1.002 6.002 10 S 2.785 3.215 11 O -0.986 6.986 12 O -1.013 7.013 13 N -0.993 5.993 14 C 0.260 3.740 15 C -0.521 4.521 16 H 0.069 0.931 17 C 0.023 3.977 18 N -0.925 5.925 19 Si 0.941 3.059 20 H -0.258 1.258 21 H -0.281 1.281 22 H -0.286 1.286 23 C 0.131 3.869 24 C 0.037 3.963 25 O -0.398 6.398 26 C 0.023 3.977 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.009 0.991 41 H 0.024 0.976 42 H 0.263 0.737 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.040 0.960 47 H 0.086 0.914 48 H 0.060 0.940 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.429 12.039 -4.725 14.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.209 4.209 3 C 0.061 3.939 4 H 0.089 0.911 5 C -0.166 4.166 6 C -0.150 4.150 7 C -0.167 4.167 8 C -0.016 4.016 9 N -0.843 5.843 10 S 2.797 3.203 11 O -0.970 6.970 12 O -0.998 6.998 13 N -0.833 5.833 14 C 0.137 3.863 15 C -0.560 4.560 16 H 0.087 0.913 17 C -0.176 4.176 18 N -0.565 5.565 19 Si 0.767 3.233 20 H -0.182 1.182 21 H -0.207 1.207 22 H -0.212 1.212 23 C 0.005 3.995 24 C -0.042 4.042 25 O -0.317 6.317 26 C -0.073 4.073 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.027 0.973 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.121 0.879 45 H 0.103 0.897 46 H 0.058 0.942 47 H 0.105 0.895 48 H 0.079 0.921 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.766 11.427 -5.471 14.362 hybrid contribution -0.970 -0.435 1.153 1.568 sum 5.796 10.992 -4.318 13.155 Atomic orbital electron populations 1.21576 0.94924 1.00825 1.01502 1.22667 0.97397 0.95627 1.05219 1.20894 0.78184 0.96418 0.98423 0.91146 1.21922 1.01711 0.97146 0.95831 1.21486 0.94694 0.95751 1.03041 1.21882 0.97075 1.01599 0.96168 1.21656 0.96434 0.84123 0.99369 1.58138 1.16354 1.23608 1.86160 1.01688 0.72083 0.73254 0.73313 1.93544 1.33109 1.85588 1.84771 1.93608 1.73375 1.57997 1.74792 1.57658 1.42682 1.58238 1.24710 1.18767 0.84797 0.88504 0.94234 1.21628 1.00288 0.93940 1.40186 0.91322 1.25589 1.00501 0.95409 0.96131 1.70068 1.29297 1.09281 1.47855 0.85757 0.79824 0.79849 0.77844 1.18163 1.20699 1.21227 1.21288 0.87914 0.94434 0.95826 1.23145 0.93547 0.99527 0.87954 1.88137 1.42256 1.68055 1.33215 1.22886 0.88455 0.93074 1.02909 0.90898 0.94535 0.93359 0.91068 0.89528 0.89500 0.92672 0.91020 0.90022 0.88264 0.92718 0.90152 0.89605 0.97267 0.95767 0.92835 0.89667 0.87933 0.89721 0.94206 0.89547 0.92112 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 9.59 71.98 0.69 -4.09 16 2 C -0.17 -6.99 3.72 30.59 0.11 -6.88 16 3 C 0.17 5.59 2.94 44.83 0.13 5.72 16 4 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 5 C -0.13 -3.31 5.01 30.53 0.15 -3.15 16 6 C -0.11 -2.25 5.89 30.62 0.18 -2.07 16 7 C -0.13 -2.70 6.08 30.67 0.19 -2.51 16 8 C 0.11 2.86 6.51 86.36 0.56 3.42 16 9 N -1.00 -34.16 3.35 -491.52 -1.65 -35.81 16 10 S 2.79 116.72 5.59 -56.49 -0.32 116.40 16 11 O -0.99 -42.17 13.65 -119.76 -1.63 -43.80 16 12 O -1.01 -49.56 11.95 -128.00 -1.53 -51.09 16 13 N -0.99 -41.70 2.80 -519.83 -1.45 -43.16 16 14 C 0.26 13.03 4.68 85.64 0.40 13.43 16 15 C -0.52 -26.12 7.70 25.60 0.20 -25.93 16 16 H 0.07 3.30 7.81 -2.91 -0.02 3.28 16 17 C 0.02 1.22 5.46 84.65 0.46 1.69 16 18 N -0.93 -52.41 13.29 21.45 0.28 -52.13 16 19 Si 0.94 41.00 29.54 68.60 2.03 43.02 16 20 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 23 C 0.13 4.48 5.79 86.38 0.50 4.98 16 24 C 0.04 1.17 6.28 71.98 0.45 1.62 16 25 O -0.40 -14.25 8.49 -129.16 -1.10 -15.35 16 26 C 0.02 0.63 11.01 113.37 1.25 1.87 16 27 H 0.07 2.12 7.04 -2.39 -0.02 2.11 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 3.12 6.38 -2.38 -0.02 3.10 16 31 H 0.09 4.16 2.19 -2.39 -0.01 4.16 16 32 H 0.09 1.98 7.05 -2.38 -0.02 1.96 16 33 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 34 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.09 2.33 6.75 -2.39 -0.02 2.32 16 40 H 0.01 0.49 8.01 -2.39 -0.02 0.47 16 41 H 0.02 1.39 5.81 -2.39 -0.01 1.38 16 42 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 43 H 0.09 2.58 7.79 -2.39 -0.02 2.57 16 44 H 0.10 3.30 8.03 -2.39 -0.02 3.28 16 45 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.04 1.37 8.01 -2.39 -0.02 1.35 16 47 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 48 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -67.72 379.64 0.83 -66.89 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.92 Total: 26.92 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 5.28 Total: -11.90 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -2.82 Total: -131.09 kcal Atomic # 8 Polarization: -105.98 SS G_CDS: -4.26 Total: -110.24 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 16 Polarization: 116.72 SS G_CDS: -0.32 Total: 116.40 kcal Total: -67.72 0.83 -66.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330369851.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.991 kcal (2) G-P(sol) polarization free energy of solvation -67.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds