Wall clock time and date at job start Tue Mar 31 2020 17:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46915 * 2 1 4 4 H 1.08997 * 109.87035 * 52.25846 * 3 2 1 5 5 C 1.54316 * 109.87816 * 291.23583 * 3 2 1 6 6 H 1.09003 * 110.71933 * 99.88018 * 5 3 2 7 7 C 1.52996 * 110.72832 * 336.60251 * 5 3 2 8 8 C 1.55554 * 102.75767 * 218.26574 * 5 3 2 9 9 C 1.54905 * 101.59750 * 35.53636 * 8 5 3 10 10 N 1.47022 * 109.87609 * 173.27182 * 3 2 1 11 11 S 1.65605 * 125.64930 * 298.54275 * 10 3 2 12 12 O 1.42094 * 106.40122 * 29.37329 * 11 10 3 13 13 O 1.42096 * 106.39810 * 162.29790 * 11 10 3 14 14 N 1.65601 * 107.21591 * 275.83518 * 11 10 3 15 15 C 1.46500 * 120.00262 * 84.48607 * 14 11 10 16 16 C 1.50704 * 109.46775 * 94.99640 * 15 14 11 17 17 H 1.07993 * 120.00328 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99549 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99922 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00267 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47100 * 89.99922 * 20 18 16 22 22 H 1.48497 * 109.46987 * 210.00157 * 20 18 16 23 23 H 1.48504 * 109.46900 * 329.99776 * 20 18 16 24 24 C 1.46506 * 119.99884 * 264.48257 * 14 11 10 25 25 C 1.52998 * 109.46736 * 94.19067 * 24 14 11 26 26 O 1.42902 * 109.47542 * 65.17557 * 25 24 14 27 27 C 1.42901 * 114.00117 * 179.97438 * 26 25 24 28 28 H 1.09002 * 109.46848 * 173.04908 * 1 2 3 29 29 H 1.09003 * 109.47439 * 293.05125 * 1 2 3 30 30 H 1.08998 * 109.47096 * 53.05605 * 1 2 3 31 31 H 1.08998 * 109.47349 * 239.99967 * 2 1 3 32 32 H 1.08999 * 109.46769 * 119.99718 * 2 1 3 33 33 H 1.08997 * 109.46804 * 66.55061 * 7 5 3 34 34 H 1.08997 * 109.47496 * 186.55704 * 7 5 3 35 35 H 1.09001 * 109.46754 * 306.55641 * 7 5 3 36 36 H 1.08999 * 111.02744 * 277.44409 * 8 5 3 37 37 H 1.08997 * 110.99687 * 153.62094 * 8 5 3 38 38 H 1.09000 * 110.36885 * 204.11170 * 9 8 5 39 39 H 1.09003 * 110.45649 * 81.83598 * 9 8 5 40 40 H 1.08998 * 109.47362 * 214.99585 * 15 14 11 41 41 H 1.08998 * 109.47248 * 335.00151 * 15 14 11 42 42 H 0.97003 * 120.00481 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.46732 * 214.18998 * 24 14 11 44 44 H 1.08998 * 109.47177 * 334.19089 * 24 14 11 45 45 H 1.09008 * 109.46888 * 185.17371 * 25 24 14 46 46 H 1.09002 * 109.47201 * 305.17032 * 25 24 14 47 47 H 1.09001 * 109.47069 * 299.99886 * 27 26 25 48 48 H 1.08998 * 109.47176 * 59.99499 * 27 26 25 49 49 H 1.09002 * 109.46889 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5719 2.0010 0.8106 5 6 1.7193 2.1125 -1.3527 6 1 0.8316 2.7399 -1.2715 7 6 1.5420 1.0605 -2.4494 8 6 2.9853 2.9770 -1.6166 9 6 4.1033 2.0788 -1.0310 10 7 3.5012 1.4562 0.1620 11 16 4.3330 0.8688 1.4680 12 8 3.5478 -0.1886 2.0013 13 8 5.6786 0.7001 1.0437 14 7 4.3506 2.0628 2.6153 15 6 3.2181 2.2145 3.5321 16 6 3.5069 1.4759 4.8136 17 1 4.4407 0.9468 4.9333 18 6 2.5788 1.4756 5.8333 19 7 2.8305 0.8306 6.9514 20 14 0.9632 2.3902 5.6260 21 1 -0.0501 1.4778 5.0381 22 1 0.4909 2.8669 6.9507 23 1 1.1648 3.5530 4.7246 24 6 5.4988 2.9675 2.7135 25 6 5.2217 4.2333 1.9001 26 8 4.1313 4.9471 2.4863 27 6 3.7896 6.1528 1.7996 28 1 -0.3633 -1.0201 -0.1244 29 1 -0.3634 0.4024 0.9456 30 1 -0.3633 0.6177 -0.8213 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.6516 0.4668 -2.2427 34 1 1.4324 1.5561 -3.4140 35 1 2.4157 0.4092 -2.4727 36 1 2.9282 3.9266 -1.0846 37 1 3.1326 3.1380 -2.6845 38 1 4.9662 2.6822 -0.7495 39 1 4.3945 1.3145 -1.7515 40 1 3.0650 3.2718 3.7488 41 1 2.3197 1.8043 3.0709 42 1 2.1778 0.8307 7.6689 43 1 5.6624 3.2349 3.7574 44 1 6.3869 2.4712 2.3221 45 1 6.1100 4.8652 1.8973 46 1 4.9678 3.9590 0.8762 47 1 4.6483 6.8243 1.7951 48 1 3.5062 5.9187 0.7735 49 1 2.9541 6.6354 2.3067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330371987.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:07 Heat of formation + Delta-G solvation = -114.708298 kcal Electronic energy + Delta-G solvation = -30528.727804 eV Core-core repulsion = 26618.169807 eV Total energy + Delta-G solvation = -3910.557997 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.43085 -37.91066 -36.71192 -35.45924 -35.20130 -33.44631 -32.41145 -31.99552 -29.82126 -28.22778 -27.17613 -26.42018 -25.84566 -23.22836 -22.63883 -21.77651 -21.48727 -19.55462 -18.33220 -17.50772 -17.08800 -16.69843 -16.15080 -15.93425 -15.53196 -15.19454 -15.02150 -14.77105 -14.23150 -14.17933 -13.86916 -13.55555 -13.16561 -12.86391 -12.69832 -12.53708 -12.35744 -12.26616 -12.18040 -12.03648 -11.93539 -11.78767 -11.67451 -11.41562 -11.35018 -11.18465 -11.05614 -10.95218 -10.89894 -10.77037 -10.57119 -10.43118 -10.33331 -10.15128 -10.01617 -9.48258 -9.46204 -8.80817 -8.49614 -8.04842 -5.99778 -3.97268 1.11219 3.32717 3.38052 3.41629 3.45077 3.97477 4.03661 4.36963 4.46802 4.55370 4.75064 4.93501 5.07485 5.19774 5.23033 5.25163 5.31150 5.32945 5.36332 5.41657 5.45879 5.47900 5.51781 5.57660 5.58762 5.65669 5.67044 5.74441 5.77611 5.88581 5.91613 5.96272 6.04059 6.14809 6.20695 6.23874 6.31472 6.41697 6.54749 6.64910 6.75264 6.94938 7.24808 7.38474 7.49770 7.70130 8.58094 9.05156 9.60344 11.14018 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010356 B = 0.006176 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.142059 B = 4532.593439 C = 5272.915896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.166 4.166 3 C 0.158 3.842 4 H 0.074 0.926 5 C -0.094 4.094 6 H 0.084 0.916 7 C -0.148 4.148 8 C -0.126 4.126 9 C 0.125 3.875 10 N -1.018 6.018 11 S 2.789 3.211 12 O -0.952 6.952 13 O -0.994 6.994 14 N -0.978 5.978 15 C 0.231 3.769 16 C -0.525 4.525 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.868 3.132 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.261 1.261 24 C 0.122 3.878 25 C 0.043 3.957 26 O -0.370 6.370 27 C 0.031 3.969 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.020 0.980 42 H 0.263 0.737 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.053 0.947 46 H 0.042 0.958 47 H 0.035 0.965 48 H 0.035 0.965 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.114 8.153 -19.710 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.205 4.205 3 C 0.051 3.949 4 H 0.092 0.908 5 C -0.114 4.114 6 H 0.102 0.898 7 C -0.205 4.205 8 C -0.165 4.165 9 C -0.001 4.001 10 N -0.856 5.856 11 S 2.799 3.201 12 O -0.935 6.935 13 O -0.978 6.978 14 N -0.818 5.818 15 C 0.108 3.892 16 C -0.564 4.564 17 H 0.094 0.906 18 C -0.129 4.129 19 N -0.537 5.537 20 Si 0.694 3.306 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.185 1.185 24 C -0.005 4.005 25 C -0.036 4.036 26 O -0.288 6.288 27 C -0.066 4.066 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.835 7.134 -19.191 20.491 hybrid contribution -0.930 1.025 -0.184 1.396 sum -1.765 8.159 -19.374 21.096 Atomic orbital electron populations 1.21805 0.95464 1.01620 1.01812 1.22445 0.96405 0.96620 1.05001 1.21355 0.79506 0.96525 0.97478 0.90806 1.22231 0.98125 0.96687 0.94367 0.89816 1.21990 1.02594 0.98796 0.97143 1.22907 0.94514 0.98166 1.00906 1.21851 0.95767 0.95448 0.86998 1.59422 1.15662 1.77505 1.32987 1.01772 0.72584 0.73976 0.71732 1.93586 1.70785 1.51636 1.77534 1.93514 1.35585 1.85990 1.82746 1.57503 1.27443 1.49693 1.47152 1.19460 0.82355 0.98653 0.88734 1.21393 1.05401 1.32064 0.97569 0.90598 1.24826 0.97957 0.95067 0.95043 1.69899 1.35759 1.42571 1.05493 0.86972 0.84734 0.80965 0.77896 1.20018 1.21149 1.18540 1.21299 0.88357 0.87886 1.02938 1.23205 0.89416 0.94327 0.96641 1.88096 1.51793 1.35907 1.53041 1.22697 0.99968 0.87293 0.96647 0.92661 0.92473 0.92633 0.91318 0.87987 0.91402 0.92985 0.92236 0.90863 0.90372 0.91277 0.91762 0.93272 0.96248 0.92703 0.88373 0.88717 0.92872 0.93942 0.94621 0.94683 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.27 37.16 0.34 -1.48 16 2 C -0.17 -2.41 5.02 -26.73 -0.13 -2.54 16 3 C 0.16 2.20 3.06 -66.95 -0.20 2.00 16 4 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 5 C -0.09 -0.96 2.96 -88.57 -0.26 -1.22 16 6 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 7 C -0.15 -1.32 7.70 37.16 0.29 -1.04 16 8 C -0.13 -1.17 6.59 -24.37 -0.16 -1.33 16 9 C 0.13 1.48 6.56 -2.53 -0.02 1.46 16 10 N -1.02 -15.58 3.46 -104.42 -0.36 -15.95 16 11 S 2.79 55.70 6.26 -107.50 -0.67 55.02 16 12 O -0.95 -22.47 14.35 -57.17 -0.82 -23.29 16 13 O -0.99 -20.53 16.12 -57.17 -0.92 -21.45 16 14 N -0.98 -20.15 2.81 -115.66 -0.32 -20.47 16 15 C 0.23 5.55 4.00 -5.19 -0.02 5.52 16 16 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 17 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 18 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 19 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 20 Si 0.87 21.54 27.47 -169.99 -4.67 16.88 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 24 C 0.12 2.13 6.09 -4.04 -0.02 2.10 16 25 C 0.04 0.61 6.28 37.16 0.23 0.84 16 26 O -0.37 -5.92 9.10 -35.23 -0.32 -6.24 16 27 C 0.03 0.36 11.01 101.05 1.11 1.47 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.55 5.84 -51.93 -0.30 0.25 16 31 H 0.07 0.89 5.93 -51.93 -0.31 0.59 16 32 H 0.10 1.87 5.40 -51.93 -0.28 1.59 16 33 H 0.07 0.59 5.23 -51.93 -0.27 0.32 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.57 6.75 -51.93 -0.35 0.22 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 38 H 0.07 0.78 6.91 -51.93 -0.36 0.42 16 39 H 0.06 0.71 7.81 -51.93 -0.41 0.30 16 40 H 0.05 1.18 5.74 -51.93 -0.30 0.88 16 41 H 0.02 0.47 7.15 -51.93 -0.37 0.10 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.10 1.81 8.10 -51.93 -0.42 1.39 16 44 H 0.09 1.52 6.89 -51.93 -0.36 1.17 16 45 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 46 H 0.04 0.55 6.84 -51.93 -0.36 0.19 16 47 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -35.00 382.59 -9.15 -44.16 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -8.31 Total: 0.54 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 0.71 Total: -7.66 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: 0.09 Total: -63.71 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -2.06 Total: -50.99 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 16 Polarization: 55.70 SS G_CDS: -0.67 Total: 55.02 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.00 -9.15 -44.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330371987.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.552 kcal (2) G-P(sol) polarization free energy of solvation -35.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds