Wall clock time and date at job start Tue Mar 31 2020 17:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46915 * 2 1 4 4 H 1.08997 * 109.87035 * 52.25846 * 3 2 1 5 5 C 1.54316 * 109.87816 * 291.23583 * 3 2 1 6 6 H 1.09003 * 110.71933 * 99.88018 * 5 3 2 7 7 C 1.52996 * 110.72832 * 336.60251 * 5 3 2 8 8 C 1.55554 * 102.75767 * 218.26574 * 5 3 2 9 9 C 1.54905 * 101.59750 * 35.53636 * 8 5 3 10 10 N 1.47022 * 109.87609 * 173.27182 * 3 2 1 11 11 S 1.65605 * 125.64930 * 298.54275 * 10 3 2 12 12 O 1.42094 * 106.40122 * 29.37329 * 11 10 3 13 13 O 1.42096 * 106.39810 * 162.29790 * 11 10 3 14 14 N 1.65601 * 107.21591 * 275.83518 * 11 10 3 15 15 C 1.46500 * 120.00262 * 84.48607 * 14 11 10 16 16 C 1.50704 * 109.46775 * 94.99640 * 15 14 11 17 17 H 1.07993 * 120.00328 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99549 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99922 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00267 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47100 * 89.99922 * 20 18 16 22 22 H 1.48497 * 109.46987 * 210.00157 * 20 18 16 23 23 H 1.48504 * 109.46900 * 329.99776 * 20 18 16 24 24 C 1.46506 * 119.99884 * 264.48257 * 14 11 10 25 25 C 1.52998 * 109.46736 * 94.19067 * 24 14 11 26 26 O 1.42902 * 109.47542 * 65.17557 * 25 24 14 27 27 C 1.42901 * 114.00117 * 179.97438 * 26 25 24 28 28 H 1.09002 * 109.46848 * 173.04908 * 1 2 3 29 29 H 1.09003 * 109.47439 * 293.05125 * 1 2 3 30 30 H 1.08998 * 109.47096 * 53.05605 * 1 2 3 31 31 H 1.08998 * 109.47349 * 239.99967 * 2 1 3 32 32 H 1.08999 * 109.46769 * 119.99718 * 2 1 3 33 33 H 1.08997 * 109.46804 * 66.55061 * 7 5 3 34 34 H 1.08997 * 109.47496 * 186.55704 * 7 5 3 35 35 H 1.09001 * 109.46754 * 306.55641 * 7 5 3 36 36 H 1.08999 * 111.02744 * 277.44409 * 8 5 3 37 37 H 1.08997 * 110.99687 * 153.62094 * 8 5 3 38 38 H 1.09000 * 110.36885 * 204.11170 * 9 8 5 39 39 H 1.09003 * 110.45649 * 81.83598 * 9 8 5 40 40 H 1.08998 * 109.47362 * 214.99585 * 15 14 11 41 41 H 1.08998 * 109.47248 * 335.00151 * 15 14 11 42 42 H 0.97003 * 120.00481 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.46732 * 214.18998 * 24 14 11 44 44 H 1.08998 * 109.47177 * 334.19089 * 24 14 11 45 45 H 1.09008 * 109.46888 * 185.17371 * 25 24 14 46 46 H 1.09002 * 109.47201 * 305.17032 * 25 24 14 47 47 H 1.09001 * 109.47069 * 299.99886 * 27 26 25 48 48 H 1.08998 * 109.47176 * 59.99499 * 27 26 25 49 49 H 1.09002 * 109.46889 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5719 2.0010 0.8106 5 6 1.7193 2.1125 -1.3527 6 1 0.8316 2.7399 -1.2715 7 6 1.5420 1.0605 -2.4494 8 6 2.9853 2.9770 -1.6166 9 6 4.1033 2.0788 -1.0310 10 7 3.5012 1.4562 0.1620 11 16 4.3330 0.8688 1.4680 12 8 3.5478 -0.1886 2.0013 13 8 5.6786 0.7001 1.0437 14 7 4.3506 2.0628 2.6153 15 6 3.2181 2.2145 3.5321 16 6 3.5069 1.4759 4.8136 17 1 4.4407 0.9468 4.9333 18 6 2.5788 1.4756 5.8333 19 7 2.8305 0.8306 6.9514 20 14 0.9632 2.3902 5.6260 21 1 -0.0501 1.4778 5.0381 22 1 0.4909 2.8669 6.9507 23 1 1.1648 3.5530 4.7246 24 6 5.4988 2.9675 2.7135 25 6 5.2217 4.2333 1.9001 26 8 4.1313 4.9471 2.4863 27 6 3.7896 6.1528 1.7996 28 1 -0.3633 -1.0201 -0.1244 29 1 -0.3634 0.4024 0.9456 30 1 -0.3633 0.6177 -0.8213 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.6516 0.4668 -2.2427 34 1 1.4324 1.5561 -3.4140 35 1 2.4157 0.4092 -2.4727 36 1 2.9282 3.9266 -1.0846 37 1 3.1326 3.1380 -2.6845 38 1 4.9662 2.6822 -0.7495 39 1 4.3945 1.3145 -1.7515 40 1 3.0650 3.2718 3.7488 41 1 2.3197 1.8043 3.0709 42 1 2.1778 0.8307 7.6689 43 1 5.6624 3.2349 3.7574 44 1 6.3869 2.4712 2.3221 45 1 6.1100 4.8652 1.8973 46 1 4.9678 3.9590 0.8762 47 1 4.6483 6.8243 1.7951 48 1 3.5062 5.9187 0.7735 49 1 2.9541 6.6354 2.3067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330371987.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:06 Heat of formation + Delta-G solvation = -140.865764 kcal Electronic energy + Delta-G solvation = -30529.862077 eV Core-core repulsion = 26618.169807 eV Total energy + Delta-G solvation = -3911.692270 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.39956 -39.09823 -38.36494 -37.03920 -36.87767 -34.57651 -34.48087 -32.93921 -31.40302 -29.14316 -28.83982 -27.30074 -26.95830 -24.30514 -24.24620 -23.24303 -22.64859 -20.56557 -19.72962 -19.18798 -18.62769 -18.48833 -17.52430 -17.06675 -16.63190 -16.50170 -16.23096 -16.08997 -15.71596 -15.35205 -15.20828 -14.83630 -14.51429 -14.22078 -14.06329 -13.79679 -13.77646 -13.48466 -13.41274 -13.35974 -13.30415 -13.02381 -12.91367 -12.85351 -12.70741 -12.53309 -12.44124 -12.17903 -12.13307 -11.97476 -11.90575 -11.86610 -11.69657 -11.53484 -11.29278 -11.09178 -10.77286 -10.49455 -9.99056 -9.74436 -8.28123 -6.31843 -0.43206 1.34224 1.37262 1.47887 1.98950 2.35400 2.52143 2.96989 3.06811 3.21608 3.59360 3.73901 3.88238 3.94293 4.14134 4.19996 4.28526 4.35029 4.41558 4.42368 4.49362 4.56699 4.60369 4.62345 4.64455 4.70836 4.77727 4.81879 4.88889 4.92162 4.96029 5.02996 5.10573 5.13770 5.18120 5.18830 5.26030 5.32041 5.35980 5.41304 5.48310 5.54139 5.56295 5.68690 5.82826 6.32412 6.40424 6.69767 7.30167 8.89657 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010356 B = 0.006176 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.142059 B = 4532.593439 C = 5272.915896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.169 4.169 3 C 0.148 3.852 4 H 0.058 0.942 5 C -0.086 4.086 6 H 0.103 0.897 7 C -0.148 4.148 8 C -0.114 4.114 9 C 0.111 3.889 10 N -1.012 6.012 11 S 2.798 3.202 12 O -0.999 6.999 13 O -1.007 7.007 14 N -0.987 5.987 15 C 0.250 3.750 16 C -0.536 4.536 17 H 0.026 0.974 18 C 0.008 3.992 19 N -0.949 5.949 20 Si 0.938 3.062 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.233 1.233 24 C 0.112 3.888 25 C 0.051 3.949 26 O -0.407 6.407 27 C 0.026 3.974 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.020 0.980 42 H 0.266 0.734 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.732 11.116 -23.437 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.208 4.208 3 C 0.042 3.958 4 H 0.076 0.924 5 C -0.106 4.106 6 H 0.121 0.879 7 C -0.204 4.204 8 C -0.152 4.152 9 C -0.014 4.014 10 N -0.853 5.853 11 S 2.809 3.191 12 O -0.983 6.983 13 O -0.992 6.992 14 N -0.826 5.826 15 C 0.126 3.874 16 C -0.575 4.575 17 H 0.045 0.955 18 C -0.189 4.189 19 N -0.590 5.590 20 Si 0.760 3.240 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.156 1.156 24 C -0.014 4.014 25 C -0.027 4.027 26 O -0.327 6.327 27 C -0.070 4.070 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.410 10.113 -22.936 25.182 hybrid contribution -0.306 0.033 0.936 0.986 sum -2.717 10.146 -21.999 24.378 Atomic orbital electron populations 1.21791 0.93686 1.02602 1.02187 1.22425 0.98060 0.96956 1.03335 1.21596 0.78195 0.96271 0.99708 0.92353 1.22261 0.99355 0.97001 0.91937 0.87886 1.21991 1.02159 0.98483 0.97813 1.22920 0.92296 0.97355 1.02664 1.22255 0.97110 0.96319 0.85671 1.59003 1.16506 1.77387 1.32388 1.01166 0.72155 0.73535 0.72227 1.93541 1.71649 1.54070 1.79035 1.93478 1.36471 1.86231 1.82978 1.57446 1.27481 1.50394 1.47300 1.19048 0.83500 0.97866 0.87027 1.21713 1.03655 1.31955 1.00166 0.95514 1.25857 1.02468 0.96124 0.94446 1.70070 1.37561 1.44638 1.06722 0.85855 0.79018 0.80383 0.78735 1.19289 1.20322 1.15586 1.21507 0.87750 0.89426 1.02721 1.23098 0.90522 0.92907 0.96214 1.88020 1.52361 1.37694 1.54576 1.22893 1.00884 0.85984 0.97277 0.92107 0.94010 0.89612 0.90051 0.92559 0.91355 0.90514 0.93279 0.90214 0.87226 0.90619 0.90880 0.92454 0.96212 0.92469 0.90463 0.87975 0.89843 0.92267 0.92852 0.92867 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.27 71.98 0.67 -2.69 16 2 C -0.17 -4.85 5.02 30.60 0.15 -4.69 16 3 C 0.15 3.91 3.06 45.34 0.14 4.05 16 4 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 5 C -0.09 -1.39 2.96 -9.47 -0.03 -1.42 16 6 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 7 C -0.15 -2.02 7.70 71.98 0.55 -1.46 16 8 C -0.11 -1.57 6.59 32.13 0.21 -1.36 16 9 C 0.11 2.30 6.56 86.85 0.57 2.87 16 10 N -1.01 -29.95 3.46 -484.28 -1.67 -31.62 16 11 S 2.80 114.84 6.26 -56.49 -0.35 114.49 16 12 O -1.00 -50.03 14.35 -128.00 -1.84 -51.87 16 13 O -1.01 -42.37 16.12 -128.00 -2.06 -44.43 16 14 N -0.99 -41.66 2.81 -519.83 -1.46 -43.12 16 15 C 0.25 12.26 4.00 85.63 0.34 12.60 16 16 C -0.54 -32.53 9.94 25.60 0.25 -32.28 16 17 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 18 C 0.01 0.51 5.47 84.66 0.46 0.98 16 19 N -0.95 -61.97 13.96 21.45 0.30 -61.67 16 20 Si 0.94 44.89 27.47 68.60 1.88 46.78 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.23 -10.02 6.54 99.48 0.65 -9.37 16 24 C 0.11 3.94 6.09 86.38 0.53 4.46 16 25 C 0.05 1.33 6.28 71.98 0.45 1.78 16 26 O -0.41 -12.14 9.10 -148.98 -1.36 -13.49 16 27 C 0.03 0.51 11.01 113.37 1.25 1.75 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.45 5.84 -2.39 -0.01 1.43 16 31 H 0.08 2.06 5.93 -2.39 -0.01 2.04 16 32 H 0.06 2.16 5.40 -2.39 -0.01 2.15 16 33 H 0.07 0.93 5.23 -2.39 -0.01 0.92 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 0.79 6.75 -2.39 -0.02 0.77 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.11 0.92 8.05 -2.39 -0.02 0.90 16 38 H 0.08 1.47 6.91 -2.39 -0.02 1.46 16 39 H 0.07 1.40 7.81 -2.39 -0.02 1.38 16 40 H 0.06 2.72 5.74 -2.39 -0.01 2.71 16 41 H 0.02 0.97 7.15 -2.39 -0.02 0.96 16 42 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 43 H 0.08 2.98 8.10 -2.39 -0.02 2.96 16 44 H 0.10 3.35 6.89 -2.39 -0.02 3.33 16 45 H 0.08 1.68 8.14 -2.38 -0.02 1.67 16 46 H 0.06 1.34 6.84 -2.39 -0.02 1.33 16 47 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -81.99 382.59 -0.14 -82.12 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.87 Total: 18.22 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 5.55 Total: -15.41 kcal Atomic # 7 Polarization: -133.57 SS G_CDS: -2.84 Total: -136.41 kcal Atomic # 8 Polarization: -104.54 SS G_CDS: -5.26 Total: -109.79 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Atomic # 16 Polarization: 114.84 SS G_CDS: -0.35 Total: 114.49 kcal Total: -81.99 -0.14 -82.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330371987.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.743 kcal (2) G-P(sol) polarization free energy of solvation -81.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds