Wall clock time and date at job start Tue Mar 31 2020 17:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 H 1.08998 * 109.99715 * 52.96462 * 3 2 1 5 5 C 1.54325 * 109.88397 * 291.86640 * 3 2 1 6 6 H 1.08995 * 110.71774 * 336.75299 * 5 3 2 7 7 C 1.52994 * 110.71952 * 99.85014 * 5 3 2 8 8 C 1.55153 * 102.93990 * 218.39161 * 5 3 2 9 9 C 1.54687 * 101.68105 * 35.33668 * 8 5 3 10 10 N 1.47026 * 109.87922 * 174.05657 * 3 2 1 11 11 S 1.65601 * 125.65387 * 298.32378 * 10 3 2 12 12 O 1.42104 * 106.39647 * 331.56436 * 11 10 3 13 13 O 1.42095 * 106.40220 * 198.64613 * 11 10 3 14 14 N 1.65601 * 107.21713 * 85.10287 * 11 10 3 15 15 C 1.46497 * 119.99756 * 261.59021 * 14 11 10 16 16 C 1.50700 * 109.47025 * 251.66533 * 15 14 11 17 17 H 1.08000 * 120.00251 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00485 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99319 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00295 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47148 * 89.99805 * 20 18 16 22 22 H 1.48508 * 109.46802 * 209.99805 * 20 18 16 23 23 H 1.48493 * 109.47160 * 329.99472 * 20 18 16 24 24 C 1.46494 * 119.99697 * 81.59032 * 14 11 10 25 25 C 1.53005 * 109.47150 * 244.72787 * 24 14 11 26 26 O 1.42893 * 109.46872 * 62.81282 * 25 24 14 27 27 C 1.42899 * 113.99982 * 174.12523 * 26 25 24 28 28 H 1.08991 * 109.46943 * 186.32655 * 1 2 3 29 29 H 1.09008 * 109.46871 * 306.32685 * 1 2 3 30 30 H 1.08998 * 109.47244 * 66.32225 * 1 2 3 31 31 H 1.09000 * 109.46964 * 240.00176 * 2 1 3 32 32 H 1.09004 * 109.47277 * 119.99962 * 2 1 3 33 33 H 1.09000 * 109.46979 * 59.99606 * 7 5 3 34 34 H 1.08995 * 109.47212 * 179.97438 * 7 5 3 35 35 H 1.09003 * 109.47344 * 300.00489 * 7 5 3 36 36 H 1.09009 * 111.00452 * 153.57834 * 8 5 3 37 37 H 1.09001 * 111.00462 * 277.42492 * 8 5 3 38 38 H 1.08999 * 110.39297 * 204.36200 * 9 8 5 39 39 H 1.09000 * 110.23543 * 82.10918 * 9 8 5 40 40 H 1.09002 * 109.47622 * 11.66529 * 15 14 11 41 41 H 1.09004 * 109.47269 * 131.67103 * 15 14 11 42 42 H 0.97006 * 119.99531 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.47118 * 124.73480 * 24 14 11 44 44 H 1.08994 * 109.47430 * 4.73348 * 24 14 11 45 45 H 1.08997 * 109.46840 * 302.81367 * 25 24 14 46 46 H 1.09003 * 109.47181 * 182.81122 * 25 24 14 47 47 H 1.09001 * 109.47533 * 184.47434 * 27 26 25 48 48 H 1.09002 * 109.47064 * 304.47343 * 27 26 25 49 49 H 1.09005 * 109.47134 * 64.47157 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5826 1.9996 0.8176 5 6 1.7054 2.1176 -1.3468 6 1 1.5684 1.3708 -2.1289 7 6 0.4604 2.9972 -1.2169 8 6 2.9648 2.9798 -1.6257 9 6 4.0897 2.0851 -1.0540 10 7 3.5032 1.4555 0.1432 11 16 4.3517 0.8668 1.4378 12 8 3.4964 0.9873 2.5662 13 8 5.6422 1.4581 1.3741 14 7 4.5675 -0.7556 1.1856 15 6 3.6775 -1.7222 1.8334 16 6 4.4275 -2.4433 2.9237 17 1 5.4633 -2.2051 3.1152 18 6 3.7913 -3.4073 3.6767 19 7 2.5298 -3.6971 3.4438 20 14 4.7207 -4.3006 5.0286 21 1 4.5713 -3.5581 6.3060 22 1 4.1705 -5.6711 5.1853 23 1 6.1592 -4.3829 4.6692 24 6 5.6484 -1.2240 0.3148 25 6 5.0513 -1.9175 -0.9113 26 8 4.2820 -0.9769 -1.6630 27 6 3.7872 -1.4887 -2.9021 28 1 -0.3633 -1.0213 0.1132 29 1 -0.3633 0.6088 0.8280 30 1 -0.3633 0.4127 -0.9411 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.6385 3.7708 -0.4699 34 1 0.2430 3.4636 -2.1777 35 1 -0.3872 2.3843 -0.9100 36 1 3.0980 3.1423 -2.6953 37 1 2.9150 3.9285 -1.0913 38 1 4.9538 2.6902 -0.7796 39 1 4.3736 1.3250 -1.7818 40 1 2.8243 -1.1986 2.2645 41 1 3.3262 -2.4438 1.0957 42 1 2.0821 -4.3751 3.9739 43 1 6.2757 -1.9285 0.8611 44 1 6.2509 -0.3742 -0.0058 45 1 4.4089 -2.7368 -0.5884 46 1 5.8551 -2.3099 -1.5343 47 1 3.2822 -0.6922 -3.4486 48 1 4.6187 -1.8668 -3.4969 49 1 3.0834 -2.2977 -2.7059 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330371989.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:13 Heat of formation + Delta-G solvation = -128.507550 kcal Electronic energy + Delta-G solvation = -30761.033940 eV Core-core repulsion = 26849.877563 eV Total energy + Delta-G solvation = -3911.156377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.98646 -37.79031 -36.56304 -35.42347 -35.06687 -33.05855 -32.50900 -32.16624 -29.37027 -28.39557 -26.80163 -25.93379 -25.83987 -23.19640 -22.36708 -21.54756 -21.13038 -20.06526 -18.17083 -17.37169 -16.80265 -16.36755 -16.17432 -15.84905 -15.43678 -15.02434 -14.64653 -14.48058 -14.38234 -13.88171 -13.52903 -13.35712 -13.08430 -12.73020 -12.65131 -12.63670 -12.41404 -11.89963 -11.84815 -11.83581 -11.78178 -11.48006 -11.36466 -11.31950 -11.29974 -11.08466 -10.95451 -10.92388 -10.77481 -10.72852 -10.60349 -10.44628 -10.38983 -10.03125 -9.95347 -9.53596 -9.34894 -8.53594 -8.40092 -7.96068 -6.06067 -4.10330 1.31873 3.31207 3.37630 3.40223 3.60182 4.01535 4.28510 4.44107 4.58446 4.74654 4.89379 5.15354 5.27960 5.33454 5.34923 5.44569 5.46609 5.50548 5.53487 5.56913 5.58430 5.63932 5.68655 5.72847 5.74952 5.77174 5.89023 5.98230 5.99532 6.00587 6.07027 6.12617 6.28743 6.36138 6.44194 6.46586 6.49585 6.55751 6.74782 6.78403 6.91317 7.33251 7.41497 7.50156 7.70302 7.91788 8.24614 8.93147 9.54716 11.02198 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.005037 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.792651 B = 5557.683853 C = 5721.301250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.151 4.151 3 C 0.163 3.837 4 H 0.071 0.929 5 C -0.091 4.091 6 H 0.082 0.918 7 C -0.146 4.146 8 C -0.126 4.126 9 C 0.121 3.879 10 N -1.009 6.009 11 S 2.796 3.204 12 O -0.971 6.971 13 O -0.998 6.998 14 N -0.984 5.984 15 C 0.254 3.746 16 C -0.531 4.531 17 H 0.061 0.939 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.135 3.865 25 C 0.044 3.956 26 O -0.378 6.378 27 C 0.034 3.966 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.029 0.971 42 H 0.263 0.737 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.048 0.952 47 H 0.077 0.923 48 H 0.033 0.967 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 8.424 -15.537 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.189 4.189 3 C 0.057 3.943 4 H 0.089 0.911 5 C -0.111 4.111 6 H 0.101 0.899 7 C -0.203 4.203 8 C -0.165 4.165 9 C -0.004 4.004 10 N -0.847 5.847 11 S 2.807 3.193 12 O -0.955 6.955 13 O -0.982 6.982 14 N -0.825 5.825 15 C 0.132 3.868 16 C -0.571 4.571 17 H 0.079 0.921 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.008 3.992 25 C -0.034 4.034 26 O -0.297 6.297 27 C -0.063 4.063 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.096 0.904 48 H 0.052 0.948 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.450 8.963 -14.559 17.158 hybrid contribution 0.334 -1.279 0.322 1.360 sum -1.116 7.684 -14.237 16.216 Atomic orbital electron populations 1.21729 0.95705 1.01879 1.00982 1.22211 0.96033 0.96241 1.04433 1.21310 0.79582 0.96236 0.97200 0.91077 1.22211 0.94619 0.97308 0.96968 0.89934 1.21863 0.97414 0.99555 1.01494 1.22797 0.94712 0.98292 1.00653 1.21892 0.95770 0.95506 0.87280 1.59165 1.15207 1.74837 1.35471 1.01432 0.72620 0.72874 0.72419 1.93591 1.68109 1.86136 1.47700 1.93510 1.40154 1.77329 1.87214 1.57642 1.41305 1.24339 1.59194 1.19103 0.88715 0.87183 0.91792 1.21486 0.98290 1.20275 1.17064 0.92103 1.24930 0.94906 0.96835 0.97270 1.69929 1.10078 1.32609 1.40504 0.86548 0.79967 0.78789 0.82420 1.20492 1.21211 1.19839 1.21096 0.89276 1.00118 0.88720 1.23043 0.94634 0.93014 0.92684 1.87917 1.70874 1.38667 1.32249 1.22628 0.97773 0.99433 0.86428 0.92519 0.92825 0.93075 0.90607 0.90261 0.92582 0.92720 0.91953 0.90731 0.91178 0.91244 0.90626 0.93111 0.95274 0.92735 0.89129 0.90508 0.91864 0.93430 0.90401 0.94796 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.95 37.16 0.33 -1.63 16 2 C -0.15 -2.39 5.47 -26.73 -0.15 -2.53 16 3 C 0.16 2.43 2.53 -66.95 -0.17 2.26 16 4 H 0.07 1.13 7.82 -51.93 -0.41 0.73 16 5 C -0.09 -1.01 2.52 -88.79 -0.22 -1.23 16 6 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 7 C -0.15 -1.38 9.00 37.15 0.33 -1.04 16 8 C -0.13 -1.32 6.53 -24.70 -0.16 -1.48 16 9 C 0.12 1.62 7.03 -2.65 -0.02 1.60 16 10 N -1.01 -16.69 3.46 -104.54 -0.36 -17.05 16 11 S 2.80 59.07 5.74 -107.50 -0.62 58.45 16 12 O -0.97 -24.11 16.26 -57.17 -0.93 -25.04 16 13 O -1.00 -22.18 16.20 -57.17 -0.93 -23.11 16 14 N -0.98 -20.64 2.90 -115.66 -0.34 -20.98 16 15 C 0.25 6.27 3.88 -5.20 -0.02 6.25 16 16 C -0.53 -14.60 9.02 -34.44 -0.31 -14.91 16 17 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 20 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 24 C 0.13 2.37 6.06 -4.04 -0.02 2.34 16 25 C 0.04 0.66 6.06 37.16 0.23 0.89 16 26 O -0.38 -5.26 8.20 -35.23 -0.29 -5.55 16 27 C 0.03 0.37 11.01 101.05 1.11 1.48 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.05 0.56 6.51 -51.93 -0.34 0.23 16 31 H 0.08 1.15 7.29 -51.93 -0.38 0.78 16 32 H 0.08 1.57 4.47 -51.93 -0.23 1.34 16 33 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.58 6.17 -51.93 -0.32 0.26 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 37 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 38 H 0.07 0.95 7.78 -51.93 -0.40 0.55 16 39 H 0.08 0.97 6.38 -51.93 -0.33 0.64 16 40 H 0.05 1.39 5.46 -51.93 -0.28 1.10 16 41 H 0.03 0.73 6.83 -51.93 -0.35 0.38 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.09 1.60 7.95 -51.93 -0.41 1.19 16 44 H 0.08 1.27 7.08 -51.93 -0.37 0.90 16 45 H 0.06 1.06 6.89 -51.93 -0.36 0.70 16 46 H 0.05 0.59 8.11 -51.93 -0.42 0.17 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.03 0.32 8.11 -51.93 -0.42 -0.10 16 49 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 386.13 15.07 5.82 5.82 Total: -1.00 -32.55 386.13 -9.44 -41.99 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -8.35 Total: 0.28 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 0.83 Total: -6.35 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 0.04 Total: -62.99 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -2.14 Total: -53.69 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 59.07 SS G_CDS: -0.62 Total: 58.45 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.55 -9.44 -41.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330371989.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.517 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds