Wall clock time and date at job start Tue Mar 31 2020 17:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 H 1.08998 * 109.99715 * 52.96462 * 3 2 1 5 5 C 1.54325 * 109.88397 * 291.86640 * 3 2 1 6 6 H 1.08995 * 110.71774 * 336.75299 * 5 3 2 7 7 C 1.52994 * 110.71952 * 99.85014 * 5 3 2 8 8 C 1.55153 * 102.93990 * 218.39161 * 5 3 2 9 9 C 1.54687 * 101.68105 * 35.33668 * 8 5 3 10 10 N 1.47026 * 109.87922 * 174.05657 * 3 2 1 11 11 S 1.65601 * 125.65387 * 298.32378 * 10 3 2 12 12 O 1.42104 * 106.39647 * 331.56436 * 11 10 3 13 13 O 1.42095 * 106.40220 * 198.64613 * 11 10 3 14 14 N 1.65601 * 107.21713 * 85.10287 * 11 10 3 15 15 C 1.46497 * 119.99756 * 261.59021 * 14 11 10 16 16 C 1.50700 * 109.47025 * 251.66533 * 15 14 11 17 17 H 1.08000 * 120.00251 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00485 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99319 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00295 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47148 * 89.99805 * 20 18 16 22 22 H 1.48508 * 109.46802 * 209.99805 * 20 18 16 23 23 H 1.48493 * 109.47160 * 329.99472 * 20 18 16 24 24 C 1.46494 * 119.99697 * 81.59032 * 14 11 10 25 25 C 1.53005 * 109.47150 * 244.72787 * 24 14 11 26 26 O 1.42893 * 109.46872 * 62.81282 * 25 24 14 27 27 C 1.42899 * 113.99982 * 174.12523 * 26 25 24 28 28 H 1.08991 * 109.46943 * 186.32655 * 1 2 3 29 29 H 1.09008 * 109.46871 * 306.32685 * 1 2 3 30 30 H 1.08998 * 109.47244 * 66.32225 * 1 2 3 31 31 H 1.09000 * 109.46964 * 240.00176 * 2 1 3 32 32 H 1.09004 * 109.47277 * 119.99962 * 2 1 3 33 33 H 1.09000 * 109.46979 * 59.99606 * 7 5 3 34 34 H 1.08995 * 109.47212 * 179.97438 * 7 5 3 35 35 H 1.09003 * 109.47344 * 300.00489 * 7 5 3 36 36 H 1.09009 * 111.00452 * 153.57834 * 8 5 3 37 37 H 1.09001 * 111.00462 * 277.42492 * 8 5 3 38 38 H 1.08999 * 110.39297 * 204.36200 * 9 8 5 39 39 H 1.09000 * 110.23543 * 82.10918 * 9 8 5 40 40 H 1.09002 * 109.47622 * 11.66529 * 15 14 11 41 41 H 1.09004 * 109.47269 * 131.67103 * 15 14 11 42 42 H 0.97006 * 119.99531 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.47118 * 124.73480 * 24 14 11 44 44 H 1.08994 * 109.47430 * 4.73348 * 24 14 11 45 45 H 1.08997 * 109.46840 * 302.81367 * 25 24 14 46 46 H 1.09003 * 109.47181 * 182.81122 * 25 24 14 47 47 H 1.09001 * 109.47533 * 184.47434 * 27 26 25 48 48 H 1.09002 * 109.47064 * 304.47343 * 27 26 25 49 49 H 1.09005 * 109.47134 * 64.47157 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5826 1.9996 0.8176 5 6 1.7054 2.1176 -1.3468 6 1 1.5684 1.3708 -2.1289 7 6 0.4604 2.9972 -1.2169 8 6 2.9648 2.9798 -1.6257 9 6 4.0897 2.0851 -1.0540 10 7 3.5032 1.4555 0.1432 11 16 4.3517 0.8668 1.4378 12 8 3.4964 0.9873 2.5662 13 8 5.6422 1.4581 1.3741 14 7 4.5675 -0.7556 1.1856 15 6 3.6775 -1.7222 1.8334 16 6 4.4275 -2.4433 2.9237 17 1 5.4633 -2.2051 3.1152 18 6 3.7913 -3.4073 3.6767 19 7 2.5298 -3.6971 3.4438 20 14 4.7207 -4.3006 5.0286 21 1 4.5713 -3.5581 6.3060 22 1 4.1705 -5.6711 5.1853 23 1 6.1592 -4.3829 4.6692 24 6 5.6484 -1.2240 0.3148 25 6 5.0513 -1.9175 -0.9113 26 8 4.2820 -0.9769 -1.6630 27 6 3.7872 -1.4887 -2.9021 28 1 -0.3633 -1.0213 0.1132 29 1 -0.3633 0.6088 0.8280 30 1 -0.3633 0.4127 -0.9411 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.6385 3.7708 -0.4699 34 1 0.2430 3.4636 -2.1777 35 1 -0.3872 2.3843 -0.9100 36 1 3.0980 3.1423 -2.6953 37 1 2.9150 3.9285 -1.0913 38 1 4.9538 2.6902 -0.7796 39 1 4.3736 1.3250 -1.7818 40 1 2.8243 -1.1986 2.2645 41 1 3.3262 -2.4438 1.0957 42 1 2.0821 -4.3751 3.9739 43 1 6.2757 -1.9285 0.8611 44 1 6.2509 -0.3742 -0.0058 45 1 4.4089 -2.7368 -0.5884 46 1 5.8551 -2.3099 -1.5343 47 1 3.2822 -0.6922 -3.4486 48 1 4.6187 -1.8668 -3.4969 49 1 3.0834 -2.2977 -2.7059 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330371989.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:12 Heat of formation + Delta-G solvation = -151.398546 kcal Electronic energy + Delta-G solvation = -30762.026568 eV Core-core repulsion = 26849.877563 eV Total energy + Delta-G solvation = -3912.149005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.09278 -38.98834 -38.34093 -37.02773 -36.85432 -34.55852 -34.23968 -33.19761 -30.87628 -29.42950 -28.58189 -26.97308 -26.92608 -24.99597 -23.48299 -22.91932 -22.43587 -21.11317 -19.74615 -18.91748 -18.62746 -18.13465 -17.54926 -17.02878 -16.80040 -16.36257 -16.23361 -15.78718 -15.60587 -15.22772 -14.86695 -14.62974 -14.57143 -14.15389 -13.95556 -13.72122 -13.60308 -13.42205 -13.32236 -13.20312 -13.05782 -13.01244 -12.97797 -12.79090 -12.71425 -12.54181 -12.48392 -12.35354 -12.22398 -12.05948 -11.89063 -11.74658 -11.67643 -11.57705 -11.37459 -10.94295 -10.59249 -10.41529 -9.81488 -9.69078 -8.19551 -6.32084 -0.32484 1.38219 1.41072 1.50255 2.05073 2.39364 2.61128 3.03995 3.11297 3.29111 3.65939 3.87462 3.92811 4.09064 4.23740 4.27251 4.33441 4.37324 4.47186 4.58019 4.61342 4.67378 4.68100 4.68887 4.75663 4.82486 4.92903 4.94583 4.95302 5.00089 5.04277 5.08721 5.18454 5.22804 5.25669 5.28017 5.30994 5.39116 5.47193 5.49520 5.57387 5.63417 5.69316 5.76577 6.00245 6.14769 6.40889 6.78324 7.36828 8.87898 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.005037 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.792651 B = 5557.683853 C = 5721.301250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.148 4.148 3 C 0.157 3.843 4 H 0.053 0.947 5 C -0.080 4.080 6 H 0.098 0.902 7 C -0.144 4.144 8 C -0.115 4.115 9 C 0.112 3.888 10 N -1.004 6.004 11 S 2.803 3.197 12 O -1.018 7.018 13 O -1.014 7.014 14 N -0.987 5.987 15 C 0.280 3.720 16 C -0.552 4.552 17 H 0.056 0.944 18 C 0.014 3.986 19 N -0.922 5.922 20 Si 0.957 3.043 21 H -0.281 1.281 22 H -0.275 1.275 23 H -0.263 1.263 24 C 0.126 3.874 25 C 0.056 3.944 26 O -0.391 6.391 27 C 0.030 3.970 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.266 0.734 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.038 0.962 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.051 0.949 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 9.106 -18.299 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.187 4.187 3 C 0.051 3.949 4 H 0.072 0.928 5 C -0.100 4.100 6 H 0.116 0.884 7 C -0.201 4.201 8 C -0.154 4.154 9 C -0.013 4.013 10 N -0.845 5.845 11 S 2.815 3.185 12 O -1.002 7.002 13 O -0.998 6.998 14 N -0.828 5.828 15 C 0.157 3.843 16 C -0.591 4.591 17 H 0.075 0.925 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.782 3.218 21 H -0.207 1.207 22 H -0.200 1.200 23 H -0.187 1.187 24 C 0.000 4.000 25 C -0.022 4.022 26 O -0.310 6.310 27 C -0.066 4.066 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.057 0.943 46 H 0.098 0.902 47 H 0.119 0.881 48 H 0.069 0.931 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.292 9.646 -17.336 19.880 hybrid contribution 0.282 -1.434 1.100 1.829 sum -1.010 8.212 -16.236 18.222 Atomic orbital electron populations 1.21702 0.93984 1.01504 1.02571 1.22153 0.97598 0.96527 1.02389 1.21524 0.78202 0.95812 0.99362 0.92843 1.22208 0.95731 0.97691 0.94402 0.88389 1.21861 0.96351 0.99149 1.02761 1.22818 0.92589 0.97367 1.02580 1.22213 0.96802 0.96194 0.86053 1.58800 1.16011 1.74204 1.35462 1.00838 0.72100 0.72891 0.72651 1.93521 1.69121 1.86750 1.50858 1.93472 1.41076 1.77546 1.87688 1.57489 1.41734 1.23666 1.59877 1.18523 0.88036 0.86827 0.90921 1.21854 0.98377 1.20804 1.18106 0.92536 1.25752 0.95757 0.97634 0.99476 1.70037 1.11394 1.33186 1.41554 0.85576 0.79258 0.77840 0.79144 1.20707 1.20048 1.18685 1.21333 0.88646 1.00659 0.89371 1.22796 0.95145 0.91942 0.92306 1.87881 1.70952 1.38565 1.33572 1.22827 0.98369 1.00160 0.85250 0.93463 0.93395 0.89689 0.89958 0.94875 0.93164 0.90169 0.91960 0.87214 0.90962 0.91761 0.89532 0.96314 0.96178 0.92488 0.89836 0.89279 0.94340 0.90159 0.88141 0.93064 0.95172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.95 71.98 0.64 -3.10 16 2 C -0.15 -4.77 5.47 30.60 0.17 -4.60 16 3 C 0.16 4.63 2.53 45.34 0.11 4.74 16 4 H 0.05 1.75 7.82 -2.39 -0.02 1.73 16 5 C -0.08 -1.53 2.52 -9.61 -0.02 -1.56 16 6 H 0.10 1.63 7.75 -2.39 -0.02 1.61 16 7 C -0.14 -2.24 9.00 71.98 0.65 -1.59 16 8 C -0.11 -2.00 6.53 31.91 0.21 -1.79 16 9 C 0.11 2.77 7.03 86.78 0.61 3.38 16 10 N -1.00 -33.18 3.46 -484.66 -1.68 -34.85 16 11 S 2.80 122.89 5.74 -56.49 -0.32 122.57 16 12 O -1.02 -53.64 16.26 -128.00 -2.08 -55.73 16 13 O -1.01 -45.97 16.20 -128.00 -2.07 -48.04 16 14 N -0.99 -43.06 2.90 -519.85 -1.51 -44.57 16 15 C 0.28 14.62 3.88 85.63 0.33 14.95 16 16 C -0.55 -31.45 9.02 25.60 0.23 -31.22 16 17 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 18 C 0.01 0.77 5.46 84.66 0.46 1.23 16 19 N -0.92 -54.72 13.29 21.45 0.28 -54.44 16 20 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 24 C 0.13 4.46 6.06 86.38 0.52 4.98 16 25 C 0.06 1.65 6.06 71.98 0.44 2.08 16 26 O -0.39 -10.24 8.20 -148.98 -1.22 -11.46 16 27 C 0.03 0.56 11.01 113.37 1.25 1.81 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.31 8.14 -2.38 -0.02 1.30 16 30 H 0.08 1.67 6.51 -2.39 -0.02 1.66 16 31 H 0.08 2.47 7.29 -2.39 -0.02 2.46 16 32 H 0.03 1.39 4.47 -2.38 -0.01 1.38 16 33 H 0.05 0.85 8.11 -2.39 -0.02 0.83 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.98 6.17 -2.39 -0.01 0.97 16 36 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.07 1.27 8.03 -2.39 -0.02 1.25 16 38 H 0.06 1.66 7.78 -2.39 -0.02 1.64 16 39 H 0.09 1.97 6.38 -2.39 -0.02 1.95 16 40 H 0.02 1.11 5.46 -2.39 -0.01 1.10 16 41 H 0.02 1.08 6.83 -2.38 -0.02 1.06 16 42 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 43 H 0.08 3.03 7.95 -2.38 -0.02 3.01 16 44 H 0.09 2.91 7.08 -2.39 -0.02 2.90 16 45 H 0.04 1.31 6.89 -2.39 -0.02 1.30 16 46 H 0.08 1.82 8.11 -2.39 -0.02 1.80 16 47 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.05 0.79 8.11 -2.39 -0.02 0.77 16 49 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 Total: -1.00 -74.11 386.13 -0.05 -74.16 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.92 Total: 16.30 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 5.60 Total: -10.68 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -2.90 Total: -133.86 kcal Atomic # 8 Polarization: -109.85 SS G_CDS: -5.38 Total: -115.23 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 122.89 SS G_CDS: -0.32 Total: 122.57 kcal Total: -74.11 -0.05 -74.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330371989.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.241 kcal (2) G-P(sol) polarization free energy of solvation -74.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds