Wall clock time and date at job start Tue Mar 31 2020 17:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46843 * 2 1 4 4 H 1.08999 * 109.87420 * 306.78009 * 3 2 1 5 5 C 1.54319 * 109.88561 * 67.79967 * 3 2 1 6 6 H 1.09002 * 110.72432 * 259.97276 * 5 3 2 7 7 C 1.53003 * 110.71768 * 23.24834 * 5 3 2 8 8 C 1.55167 * 102.94421 * 141.60784 * 5 3 2 9 9 C 1.54908 * 101.57981 * 324.49925 * 8 5 3 10 10 N 1.47028 * 109.88173 * 185.60976 * 3 2 1 11 11 S 1.65595 * 125.64946 * 61.61985 * 10 3 2 12 12 O 1.42101 * 106.40230 * 210.44947 * 11 10 3 13 13 O 1.42104 * 106.40328 * 343.36964 * 11 10 3 14 14 N 1.65607 * 107.22004 * 96.91193 * 11 10 3 15 15 C 1.46495 * 119.99928 * 89.99735 * 14 11 10 16 16 C 1.50700 * 109.46687 * 95.00531 * 15 14 11 17 17 H 1.08000 * 120.00606 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99640 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00334 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99879 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47093 * 60.00191 * 20 18 16 22 22 H 1.48500 * 109.47135 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47639 * 300.00200 * 20 18 16 24 24 C 1.46501 * 119.99411 * 270.00000 * 14 11 10 25 25 C 1.53005 * 109.46998 * 95.00164 * 24 14 11 26 26 O 1.42901 * 109.47300 * 64.99386 * 25 24 14 27 27 C 1.42900 * 114.00103 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.47331 * 67.12883 * 1 2 3 29 29 H 1.09000 * 109.47558 * 307.13085 * 1 2 3 30 30 H 1.09004 * 109.47144 * 187.12349 * 1 2 3 31 31 H 1.09000 * 109.47182 * 119.99682 * 2 1 3 32 32 H 1.08999 * 109.47448 * 240.00017 * 2 1 3 33 33 H 1.08995 * 109.47515 * 53.82025 * 7 5 3 34 34 H 1.09005 * 109.47033 * 173.81788 * 7 5 3 35 35 H 1.09003 * 109.46729 * 293.81728 * 7 5 3 36 36 H 1.08997 * 111.00167 * 82.57598 * 8 5 3 37 37 H 1.08994 * 111.00306 * 206.42480 * 8 5 3 38 38 H 1.08999 * 110.36543 * 155.84339 * 9 8 5 39 39 H 1.08998 * 110.36968 * 278.06081 * 9 8 5 40 40 H 1.09001 * 109.47016 * 214.99969 * 15 14 11 41 41 H 1.08993 * 109.47402 * 335.00493 * 15 14 11 42 42 H 0.96991 * 120.00364 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.47032 * 214.99485 * 24 14 11 44 44 H 1.08996 * 109.47760 * 334.99626 * 24 14 11 45 45 H 1.09005 * 109.47043 * 184.99485 * 25 24 14 46 46 H 1.09000 * 109.47008 * 304.99326 * 25 24 14 47 47 H 1.09003 * 109.47122 * 180.02562 * 27 26 25 48 48 H 1.09004 * 109.46796 * 300.00166 * 27 26 25 49 49 H 1.08994 * 109.47350 * 59.99720 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5847 1.9964 -0.8210 5 6 1.6978 2.1201 1.3436 6 1 0.8131 2.7491 1.2442 7 6 1.4995 1.0741 2.4424 8 6 2.9557 2.9831 1.6278 9 6 4.0841 2.0823 1.0664 10 7 3.5039 1.4553 -0.1352 11 16 4.3594 0.8631 -1.4234 12 8 5.6050 0.4155 -0.9062 13 8 3.4692 0.0214 -2.1434 14 7 4.6988 2.1437 -2.4170 15 6 5.9329 2.9102 -2.2284 16 6 7.0008 2.3769 -3.1484 17 1 6.7822 1.5496 -3.8073 18 6 8.2570 2.9453 -3.1489 19 7 8.5234 3.9524 -2.3462 20 14 9.5809 2.2840 -4.2887 21 1 9.1294 2.4104 -5.6977 22 1 10.8319 3.0609 -4.0976 23 1 9.8342 0.8544 -3.9765 24 6 3.7647 2.5101 -3.4845 25 6 2.8296 3.6143 -2.9871 26 8 3.5868 4.7974 -2.7247 27 6 2.8040 5.8956 -2.2521 28 1 -0.3634 0.3994 -0.9469 29 1 -0.3634 0.6203 0.8193 30 1 -0.3634 -1.0198 0.1274 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.3740 0.4250 2.4883 34 1 1.3682 1.5750 3.4016 35 1 0.6151 0.4770 2.2202 36 1 2.9088 3.9307 1.0913 37 1 3.0830 3.1476 2.6977 38 1 4.9522 2.6845 0.7984 39 1 4.3614 1.3221 1.7966 40 1 5.7473 3.9597 -2.4570 41 1 6.2643 2.8166 -1.1943 42 1 9.4070 4.3525 -2.3468 43 1 4.3234 2.8692 -4.3488 44 1 3.1772 1.6371 -3.7688 45 1 2.0787 3.8249 -3.7488 46 1 2.3366 3.2878 -2.0715 47 1 3.4516 6.7547 -2.0770 48 1 2.0523 6.1536 -2.9982 49 1 2.3108 5.6162 -1.3211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330371990.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:16 Heat of formation + Delta-G solvation = -119.425229 kcal Electronic energy + Delta-G solvation = -30302.143952 eV Core-core repulsion = 26391.381413 eV Total energy + Delta-G solvation = -3910.762538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.42977 -37.77127 -36.61440 -35.30121 -35.10594 -33.48429 -32.46234 -31.98118 -29.49463 -28.17271 -26.72458 -26.43308 -25.64427 -23.27640 -22.78999 -21.81519 -21.53901 -19.53752 -18.25783 -17.47155 -16.97750 -16.27305 -15.98127 -15.74153 -15.53900 -15.17456 -15.00415 -14.59863 -14.39878 -14.18410 -13.85985 -13.43334 -13.09485 -12.83725 -12.63315 -12.53876 -12.20622 -12.11007 -12.06658 -11.91511 -11.90801 -11.73140 -11.56271 -11.31341 -11.20388 -11.05922 -10.98837 -10.96433 -10.82443 -10.68971 -10.57829 -10.42245 -10.34772 -10.18166 -9.93686 -9.67838 -9.33365 -8.73735 -8.31728 -7.96332 -5.95395 -3.98215 1.22293 3.39592 3.42630 3.47071 3.53590 4.07607 4.14510 4.43349 4.52550 4.62884 4.76220 4.99940 5.11932 5.15863 5.26563 5.32465 5.34015 5.35300 5.39716 5.42764 5.51990 5.53202 5.56767 5.62497 5.66820 5.69872 5.77412 5.83893 5.87674 5.89204 5.95096 5.97096 6.07181 6.10464 6.21572 6.23471 6.34155 6.49210 6.53704 6.57683 6.76952 7.46293 7.49946 7.56688 7.80878 8.02738 8.34263 9.03113 9.65328 11.13136 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014056 B = 0.004776 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.605212 B = 5861.206297 C = 6389.273995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.163 4.163 3 C 0.160 3.840 4 H 0.067 0.933 5 C -0.095 4.095 6 H 0.081 0.919 7 C -0.150 4.150 8 C -0.125 4.125 9 C 0.124 3.876 10 N -1.017 6.017 11 S 2.788 3.212 12 O -0.960 6.960 13 O -0.994 6.994 14 N -0.983 5.983 15 C 0.260 3.740 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.123 3.877 25 C 0.043 3.957 26 O -0.365 6.365 27 C 0.032 3.968 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.042 0.958 47 H 0.082 0.918 48 H 0.033 0.967 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.285 0.234 7.331 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.202 4.202 3 C 0.054 3.946 4 H 0.085 0.915 5 C -0.115 4.115 6 H 0.099 0.901 7 C -0.207 4.207 8 C -0.164 4.164 9 C -0.002 4.002 10 N -0.855 5.855 11 S 2.799 3.201 12 O -0.944 6.944 13 O -0.978 6.978 14 N -0.824 5.824 15 C 0.138 3.862 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.004 4.004 25 C -0.036 4.036 26 O -0.283 6.283 27 C -0.065 4.065 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.101 0.899 48 H 0.051 0.949 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -17.585 -0.575 7.144 18.989 hybrid contribution 0.418 0.236 -0.504 0.696 sum -17.167 -0.339 6.641 18.410 Atomic orbital electron populations 1.21810 0.95413 1.01644 1.01724 1.22370 0.96357 0.97003 1.04467 1.21275 0.80032 0.95932 0.97379 0.91468 1.22170 0.98260 0.96740 0.94339 0.90065 1.22018 1.02438 0.98881 0.97339 1.22840 0.94135 0.98242 1.01175 1.21895 0.96389 0.95335 0.86564 1.59439 1.15069 1.77365 1.33645 1.01766 0.72422 0.73658 0.72285 1.93628 1.41943 1.79160 1.79635 1.93470 1.67159 1.65107 1.72111 1.57727 1.30370 1.51569 1.42708 1.19104 0.77791 0.92602 0.96720 1.21475 0.96032 1.16888 1.22210 0.92525 1.24887 0.98224 0.94936 0.95830 1.69914 1.21973 1.23592 1.37929 0.86635 0.80952 0.79187 0.81101 1.20261 1.21251 1.20141 1.21250 0.91368 0.95682 0.92085 1.23198 0.94515 0.87122 0.98787 1.88146 1.33583 1.20340 1.86214 1.22687 0.96091 0.90532 0.97222 0.92751 0.92315 0.92728 0.91129 0.88986 0.92118 0.92865 0.91564 0.90690 0.90329 0.90326 0.91795 0.92850 0.95215 0.92830 0.88760 0.89064 0.93252 0.93948 0.89900 0.94884 0.94785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.25 37.16 0.34 -1.07 16 2 C -0.16 -2.03 5.04 -26.73 -0.13 -2.17 16 3 C 0.16 2.03 2.96 -66.95 -0.20 1.83 16 4 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 5 C -0.10 -0.94 2.93 -88.78 -0.26 -1.20 16 6 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 7 C -0.15 -1.32 7.69 37.16 0.29 -1.04 16 8 C -0.13 -1.35 6.58 -24.58 -0.16 -1.51 16 9 C 0.12 1.78 6.74 -2.53 -0.02 1.76 16 10 N -1.02 -16.17 3.46 -104.42 -0.36 -16.53 16 11 S 2.79 57.17 6.23 -107.50 -0.67 56.50 16 12 O -0.96 -23.89 16.79 -57.17 -0.96 -24.85 16 13 O -0.99 -20.33 13.86 -57.17 -0.79 -21.12 16 14 N -0.98 -20.88 2.81 -115.67 -0.33 -21.20 16 15 C 0.26 6.67 4.94 -5.20 -0.03 6.65 16 16 C -0.53 -15.13 9.38 -34.44 -0.32 -15.45 16 17 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 18 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 19 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 20 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.12 2.19 6.13 -4.04 -0.02 2.17 16 25 C 0.04 0.64 6.28 37.16 0.23 0.87 16 26 O -0.36 -6.25 9.02 -35.23 -0.32 -6.57 16 27 C 0.03 0.40 11.01 101.05 1.11 1.51 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.47 5.72 -51.93 -0.30 0.17 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.84 6.00 -51.93 -0.31 0.53 16 32 H 0.09 1.40 5.66 -51.93 -0.29 1.11 16 33 H 0.06 0.61 6.74 -51.93 -0.35 0.26 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.53 5.13 -51.93 -0.27 0.27 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 38 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 39 H 0.06 0.87 7.80 -51.93 -0.41 0.47 16 40 H 0.05 1.43 6.60 -51.93 -0.34 1.09 16 41 H 0.03 0.82 7.57 -51.93 -0.39 0.43 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.09 1.76 8.11 -51.93 -0.42 1.34 16 44 H 0.09 1.47 6.91 -51.93 -0.36 1.11 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.04 0.59 6.44 -51.93 -0.33 0.25 16 47 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 385.36 15.07 5.81 5.81 Total: -1.00 -34.09 385.36 -9.47 -43.55 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.30 Total: -1.10 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 0.73 Total: -5.91 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: 0.05 Total: -63.62 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -2.07 Total: -52.54 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 57.17 SS G_CDS: -0.67 Total: 56.50 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.09 -9.47 -43.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330371990.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.871 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds