Wall clock time and date at job start Tue Mar 31 2020 17:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46843 * 2 1 4 4 H 1.08999 * 109.87420 * 306.78009 * 3 2 1 5 5 C 1.54319 * 109.88561 * 67.79967 * 3 2 1 6 6 H 1.09002 * 110.72432 * 259.97276 * 5 3 2 7 7 C 1.53003 * 110.71768 * 23.24834 * 5 3 2 8 8 C 1.55167 * 102.94421 * 141.60784 * 5 3 2 9 9 C 1.54908 * 101.57981 * 324.49925 * 8 5 3 10 10 N 1.47028 * 109.88173 * 185.60976 * 3 2 1 11 11 S 1.65595 * 125.64946 * 61.61985 * 10 3 2 12 12 O 1.42101 * 106.40230 * 210.44947 * 11 10 3 13 13 O 1.42104 * 106.40328 * 343.36964 * 11 10 3 14 14 N 1.65607 * 107.22004 * 96.91193 * 11 10 3 15 15 C 1.46495 * 119.99928 * 89.99735 * 14 11 10 16 16 C 1.50700 * 109.46687 * 95.00531 * 15 14 11 17 17 H 1.08000 * 120.00606 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99640 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00334 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99879 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47093 * 60.00191 * 20 18 16 22 22 H 1.48500 * 109.47135 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47639 * 300.00200 * 20 18 16 24 24 C 1.46501 * 119.99411 * 270.00000 * 14 11 10 25 25 C 1.53005 * 109.46998 * 95.00164 * 24 14 11 26 26 O 1.42901 * 109.47300 * 64.99386 * 25 24 14 27 27 C 1.42900 * 114.00103 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.47331 * 67.12883 * 1 2 3 29 29 H 1.09000 * 109.47558 * 307.13085 * 1 2 3 30 30 H 1.09004 * 109.47144 * 187.12349 * 1 2 3 31 31 H 1.09000 * 109.47182 * 119.99682 * 2 1 3 32 32 H 1.08999 * 109.47448 * 240.00017 * 2 1 3 33 33 H 1.08995 * 109.47515 * 53.82025 * 7 5 3 34 34 H 1.09005 * 109.47033 * 173.81788 * 7 5 3 35 35 H 1.09003 * 109.46729 * 293.81728 * 7 5 3 36 36 H 1.08997 * 111.00167 * 82.57598 * 8 5 3 37 37 H 1.08994 * 111.00306 * 206.42480 * 8 5 3 38 38 H 1.08999 * 110.36543 * 155.84339 * 9 8 5 39 39 H 1.08998 * 110.36968 * 278.06081 * 9 8 5 40 40 H 1.09001 * 109.47016 * 214.99969 * 15 14 11 41 41 H 1.08993 * 109.47402 * 335.00493 * 15 14 11 42 42 H 0.96991 * 120.00364 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.47032 * 214.99485 * 24 14 11 44 44 H 1.08996 * 109.47760 * 334.99626 * 24 14 11 45 45 H 1.09005 * 109.47043 * 184.99485 * 25 24 14 46 46 H 1.09000 * 109.47008 * 304.99326 * 25 24 14 47 47 H 1.09003 * 109.47122 * 180.02562 * 27 26 25 48 48 H 1.09004 * 109.46796 * 300.00166 * 27 26 25 49 49 H 1.08994 * 109.47350 * 59.99720 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5847 1.9964 -0.8210 5 6 1.6978 2.1201 1.3436 6 1 0.8131 2.7491 1.2442 7 6 1.4995 1.0741 2.4424 8 6 2.9557 2.9831 1.6278 9 6 4.0841 2.0823 1.0664 10 7 3.5039 1.4553 -0.1352 11 16 4.3594 0.8631 -1.4234 12 8 5.6050 0.4155 -0.9062 13 8 3.4692 0.0214 -2.1434 14 7 4.6988 2.1437 -2.4170 15 6 5.9329 2.9102 -2.2284 16 6 7.0008 2.3769 -3.1484 17 1 6.7822 1.5496 -3.8073 18 6 8.2570 2.9453 -3.1489 19 7 8.5234 3.9524 -2.3462 20 14 9.5809 2.2840 -4.2887 21 1 9.1294 2.4104 -5.6977 22 1 10.8319 3.0609 -4.0976 23 1 9.8342 0.8544 -3.9765 24 6 3.7647 2.5101 -3.4845 25 6 2.8296 3.6143 -2.9871 26 8 3.5868 4.7974 -2.7247 27 6 2.8040 5.8956 -2.2521 28 1 -0.3634 0.3994 -0.9469 29 1 -0.3634 0.6203 0.8193 30 1 -0.3634 -1.0198 0.1274 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.3740 0.4250 2.4883 34 1 1.3682 1.5750 3.4016 35 1 0.6151 0.4770 2.2202 36 1 2.9088 3.9307 1.0913 37 1 3.0830 3.1476 2.6977 38 1 4.9522 2.6845 0.7984 39 1 4.3614 1.3221 1.7966 40 1 5.7473 3.9597 -2.4570 41 1 6.2643 2.8166 -1.1943 42 1 9.4070 4.3525 -2.3468 43 1 4.3234 2.8692 -4.3488 44 1 3.1772 1.6371 -3.7688 45 1 2.0787 3.8249 -3.7488 46 1 2.3366 3.2878 -2.0715 47 1 3.4516 6.7547 -2.0770 48 1 2.0523 6.1536 -2.9982 49 1 2.3108 5.6162 -1.3211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330371990.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:15 Heat of formation + Delta-G solvation = -143.666801 kcal Electronic energy + Delta-G solvation = -30303.195145 eV Core-core repulsion = 26391.381413 eV Total energy + Delta-G solvation = -3911.813732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.43173 -39.04699 -38.32583 -36.97264 -36.84465 -34.59122 -34.46585 -32.96289 -31.06422 -29.10384 -28.47893 -27.32723 -26.92446 -24.64692 -24.24819 -23.23676 -22.70799 -20.55500 -19.70122 -18.96952 -18.52536 -18.32417 -17.38460 -17.06414 -16.73204 -16.43912 -16.26255 -16.12684 -15.78633 -15.23281 -15.16728 -14.79189 -14.46691 -14.12913 -14.03436 -13.69509 -13.56197 -13.54287 -13.37508 -13.23676 -13.20507 -12.94672 -12.90480 -12.81946 -12.75688 -12.55294 -12.46564 -12.28157 -12.16337 -11.97870 -11.90289 -11.86039 -11.72008 -11.54532 -11.30708 -11.11251 -10.58461 -10.44612 -9.97628 -9.73550 -8.16888 -6.28331 -0.38069 1.37240 1.41345 1.48227 2.02470 2.40375 2.56583 3.00719 3.13824 3.24755 3.57403 3.77797 3.85962 3.98686 4.15288 4.18949 4.24364 4.39025 4.43206 4.47766 4.50881 4.56555 4.59588 4.60869 4.64080 4.76870 4.81377 4.83620 4.92418 4.95347 5.02198 5.06118 5.15200 5.16149 5.19152 5.24502 5.31511 5.35239 5.37965 5.48346 5.51103 5.64749 5.70542 5.73574 5.99380 6.16090 6.44297 6.79754 7.38989 8.90515 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014056 B = 0.004776 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.605212 B = 5861.206297 C = 6389.273995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.165 4.165 3 C 0.149 3.851 4 H 0.076 0.924 5 C -0.084 4.084 6 H 0.112 0.888 7 C -0.150 4.150 8 C -0.114 4.114 9 C 0.113 3.887 10 N -1.013 6.013 11 S 2.800 3.200 12 O -1.014 7.014 13 O -0.998 6.998 14 N -0.990 5.990 15 C 0.284 3.716 16 C -0.550 4.550 17 H 0.048 0.952 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.954 3.046 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.279 1.279 24 C 0.114 3.886 25 C 0.048 3.952 26 O -0.406 6.406 27 C 0.027 3.973 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.040 0.960 41 H 0.002 0.998 42 H 0.266 0.734 43 H 0.077 0.923 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.080 0.920 48 H 0.055 0.945 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.960 0.855 7.964 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.204 4.204 3 C 0.044 3.956 4 H 0.094 0.906 5 C -0.104 4.104 6 H 0.130 0.870 7 C -0.207 4.207 8 C -0.153 4.153 9 C -0.012 4.012 10 N -0.854 5.854 11 S 2.811 3.189 12 O -0.998 6.998 13 O -0.982 6.982 14 N -0.830 5.830 15 C 0.160 3.840 16 C -0.589 4.589 17 H 0.066 0.934 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.779 3.221 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.204 1.204 24 C -0.012 4.012 25 C -0.030 4.030 26 O -0.325 6.325 27 C -0.069 4.069 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.020 0.980 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.124 0.876 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.099 0.901 48 H 0.074 0.926 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.289 0.045 7.751 21.719 hybrid contribution 1.176 0.030 -0.654 1.346 sum -19.113 0.075 7.097 20.388 Atomic orbital electron populations 1.21787 0.92731 1.02707 1.02798 1.22363 0.98693 0.96432 1.02908 1.21683 0.77520 0.96729 0.99706 0.90649 1.22211 0.98682 0.96827 0.92651 0.86999 1.22032 1.02172 0.98586 0.97862 1.22830 0.92715 0.97393 1.02360 1.22089 0.97155 0.95904 0.86045 1.59045 1.16765 1.77025 1.32521 1.01097 0.71714 0.73500 0.72602 1.93551 1.45148 1.80432 1.80625 1.93460 1.66628 1.65334 1.72756 1.57596 1.29959 1.51014 1.44410 1.18508 0.79005 0.92098 0.94348 1.21836 0.97473 1.16861 1.22752 0.93381 1.25720 1.00402 0.95187 0.97355 1.70015 1.22661 1.24470 1.39067 0.85681 0.78503 0.78289 0.79660 1.18853 1.19940 1.20415 1.21493 0.91266 0.97623 0.90825 1.23145 0.93835 0.85706 1.00313 1.88083 1.35860 1.21792 1.86809 1.22856 0.96256 0.89172 0.98589 0.92529 0.90053 0.92064 0.91023 0.92287 0.93851 0.90936 0.90434 0.90585 0.87888 0.93243 0.91433 0.94222 0.98030 0.92505 0.90409 0.87551 0.89895 0.92629 0.90148 0.92643 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.25 71.98 0.67 -1.61 16 2 C -0.17 -3.87 5.04 30.59 0.15 -3.71 16 3 C 0.15 3.49 2.96 45.34 0.13 3.62 16 4 H 0.08 1.65 6.44 -2.39 -0.02 1.63 16 5 C -0.08 -1.37 2.93 -9.60 -0.03 -1.39 16 6 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 7 C -0.15 -2.12 7.69 71.98 0.55 -1.57 16 8 C -0.11 -2.19 6.58 31.99 0.21 -1.98 16 9 C 0.11 3.30 6.74 86.85 0.59 3.88 16 10 N -1.01 -32.39 3.46 -484.27 -1.67 -34.06 16 11 S 2.80 119.22 6.23 -56.49 -0.35 118.87 16 12 O -1.01 -53.44 16.79 -128.00 -2.15 -55.59 16 13 O -1.00 -41.67 13.86 -128.00 -1.77 -43.45 16 14 N -0.99 -43.65 2.81 -519.85 -1.46 -45.11 16 15 C 0.28 15.36 4.94 85.63 0.42 15.78 16 16 C -0.55 -32.85 9.38 25.60 0.24 -32.61 16 17 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 18 C 0.01 0.75 5.46 84.66 0.46 1.22 16 19 N -0.92 -56.33 13.29 21.45 0.28 -56.04 16 20 Si 0.95 46.47 29.54 68.60 2.03 48.50 16 21 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 24 C 0.11 4.09 6.13 86.38 0.53 4.62 16 25 C 0.05 1.37 6.28 71.98 0.45 1.82 16 26 O -0.41 -13.74 9.02 -148.98 -1.34 -15.08 16 27 C 0.03 0.64 11.01 113.37 1.25 1.89 16 28 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.08 0.94 5.72 -2.39 -0.01 0.92 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.07 1.63 6.00 -2.39 -0.01 1.62 16 32 H 0.06 1.79 5.66 -2.39 -0.01 1.77 16 33 H 0.04 0.78 6.74 -2.39 -0.02 0.76 16 34 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.08 0.93 5.13 -2.39 -0.01 0.92 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.10 1.52 8.04 -2.39 -0.02 1.50 16 38 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 39 H 0.07 1.89 7.80 -2.39 -0.02 1.87 16 40 H 0.04 2.24 6.60 -2.39 -0.02 2.22 16 41 H 0.00 0.10 7.57 -2.39 -0.02 0.08 16 42 H 0.27 15.26 8.31 -92.72 -0.77 14.49 16 43 H 0.08 3.01 8.11 -2.39 -0.02 2.99 16 44 H 0.11 3.42 6.91 -2.39 -0.02 3.40 16 45 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 46 H 0.06 1.42 6.44 -2.39 -0.02 1.40 16 47 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 49 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -77.55 385.36 0.11 -77.43 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.93 Total: 14.57 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 5.63 Total: -10.03 kcal Atomic # 7 Polarization: -132.37 SS G_CDS: -2.85 Total: -135.22 kcal Atomic # 8 Polarization: -108.85 SS G_CDS: -5.27 Total: -114.12 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Atomic # 16 Polarization: 119.22 SS G_CDS: -0.35 Total: 118.87 kcal Total: -77.55 0.11 -77.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330371990.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.233 kcal (2) G-P(sol) polarization free energy of solvation -77.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds