Wall clock time and date at job start Tue Mar 31 2020 17:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47299 * 2 1 4 4 H 1.09004 * 109.49916 * 55.05701 * 3 2 1 5 5 C 1.53042 * 109.49573 * 294.99521 * 3 2 1 6 6 C 1.53032 * 109.54176 * 178.68291 * 5 3 2 7 7 C 1.53197 * 109.31112 * 61.36196 * 6 5 3 8 8 N 1.46925 * 108.77520 * 305.36616 * 7 6 5 9 9 S 1.65594 * 120.62927 * 233.58249 * 8 7 6 10 10 O 1.42104 * 106.40332 * 336.46282 * 9 8 7 11 11 O 1.42101 * 106.40149 * 203.54232 * 9 8 7 12 12 N 1.65601 * 107.21842 * 90.00507 * 9 8 7 13 13 C 1.46496 * 119.99816 * 269.99758 * 12 9 8 14 14 C 1.50697 * 109.47344 * 264.99730 * 13 12 9 15 15 H 1.08004 * 120.00030 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00160 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00073 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00002 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46965 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46973 * 120.00165 * 18 16 14 21 21 H 1.48495 * 109.46982 * 240.00063 * 18 16 14 22 22 C 1.46500 * 119.99774 * 89.99942 * 12 9 8 23 23 C 1.52996 * 109.47197 * 95.00110 * 22 12 9 24 24 O 1.42901 * 109.47091 * 64.99872 * 23 22 12 25 25 C 1.42905 * 114.00134 * 179.97438 * 24 23 22 26 26 C 1.46920 * 118.73506 * 53.86298 * 8 7 6 27 27 H 1.09004 * 109.46774 * 60.00743 * 1 2 3 28 28 H 1.08999 * 109.47065 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47355 * 300.00720 * 1 2 3 30 30 H 1.08996 * 109.47355 * 239.99279 * 2 1 3 31 31 H 1.09004 * 109.46774 * 119.99257 * 2 1 3 32 32 H 1.09005 * 109.45924 * 58.66004 * 5 3 2 33 33 H 1.08996 * 109.46065 * 298.70674 * 5 3 2 34 34 H 1.09004 * 109.49774 * 301.41725 * 6 5 3 35 35 H 1.09001 * 109.53020 * 181.33297 * 6 5 3 36 36 H 1.08999 * 109.58563 * 185.57969 * 7 6 5 37 37 H 1.08997 * 109.58482 * 65.15689 * 7 6 5 38 38 H 1.08996 * 109.47256 * 24.99968 * 13 12 9 39 39 H 1.08997 * 109.47065 * 144.99903 * 13 12 9 40 40 H 0.96997 * 119.99654 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.47119 * 334.99967 * 22 12 9 42 42 H 1.09003 * 109.46694 * 214.99745 * 22 12 9 43 43 H 1.08994 * 109.47303 * 304.99885 * 23 22 12 44 44 H 1.09002 * 109.47060 * 184.99415 * 23 22 12 45 45 H 1.09001 * 109.47103 * 300.00246 * 25 24 23 46 46 H 1.09004 * 109.47054 * 59.99750 * 25 24 23 47 47 H 1.09000 * 109.47187 * 179.97438 * 25 24 23 48 48 H 1.09002 * 109.59315 * 65.92926 * 26 8 7 49 49 H 1.09007 * 109.58534 * 186.34800 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6356 2.1273 -1.3076 6 6 2.1168 3.5799 -1.2948 7 6 3.6447 3.6066 -1.1875 8 7 4.0498 2.8263 -0.0103 9 16 5.0323 3.4909 1.1451 10 8 5.7469 4.5413 0.5084 11 8 5.6698 2.4046 1.8031 12 7 4.0509 4.2079 2.2699 13 6 3.6559 5.6095 2.1102 14 6 4.5941 6.4885 2.8965 15 1 5.4039 6.0472 3.4585 16 6 4.4187 7.8561 2.8983 17 7 3.4323 8.3934 2.2143 18 14 5.5822 8.9457 3.8723 19 1 6.5992 8.1023 4.5503 20 1 6.2589 9.8944 2.9520 21 1 4.8129 9.7063 4.8895 22 6 3.5776 3.4404 3.4245 23 6 4.5068 3.6851 4.6151 24 8 4.4222 5.0554 5.0116 25 6 5.2556 5.3915 6.1227 26 6 3.5716 1.4431 0.1190 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 0.5505 2.1050 -1.4086 33 1 2.0891 1.6019 -2.1480 34 1 1.6830 4.0993 -0.4402 35 1 1.8080 4.0741 -2.2160 36 1 3.9854 4.6361 -1.0784 37 1 4.0817 3.1681 -2.0846 38 1 3.7008 5.8818 1.0558 39 1 2.6385 5.7444 2.4773 40 1 3.3092 9.3556 2.2153 41 1 3.5744 2.3786 3.1784 42 1 2.5667 3.7569 3.6815 43 1 5.5325 3.4522 4.3294 44 1 4.2075 3.0471 5.4467 45 1 4.9715 4.7889 6.9854 46 1 6.2970 5.1939 5.8687 47 1 5.1344 6.4482 6.3613 48 1 4.0028 0.8317 -0.6736 49 1 3.8641 1.0447 1.0906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330380000.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:54 Heat of formation + Delta-G solvation = -127.103630 kcal Electronic energy + Delta-G solvation = -30016.357431 eV Core-core repulsion = 26105.261932 eV Total energy + Delta-G solvation = -3911.095499 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.79858 -37.47554 -36.64850 -35.17183 -35.07577 -34.46822 -32.36223 -31.75935 -29.46695 -29.27909 -26.56332 -25.36843 -24.77446 -23.62293 -22.60496 -21.76896 -21.49932 -19.95950 -18.35119 -17.25725 -16.94181 -16.41146 -15.75823 -15.47027 -15.12193 -14.85284 -14.76814 -14.68604 -14.18947 -14.15668 -13.97057 -13.53951 -13.34614 -13.23135 -12.87281 -12.51833 -12.28162 -12.10037 -12.03393 -11.78067 -11.62281 -11.56040 -11.42766 -11.36652 -11.09135 -11.02931 -10.95833 -10.89929 -10.79095 -10.72017 -10.52837 -10.34789 -10.25272 -10.18635 -9.86582 -9.51772 -8.79996 -8.64853 -8.22641 -7.96837 -5.85012 -3.79245 1.20631 3.39998 3.47441 3.47995 3.52181 4.09871 4.50518 4.61618 4.62991 4.65387 4.81556 4.99035 5.08437 5.12513 5.23406 5.34134 5.43429 5.48075 5.52439 5.54330 5.57689 5.65915 5.70081 5.71108 5.79994 5.83757 5.87790 5.88929 5.91048 5.93326 6.01502 6.02071 6.06292 6.19712 6.25404 6.30748 6.37865 6.42483 6.46806 6.54064 6.83956 7.35193 7.54748 7.72591 7.97532 8.16238 8.44715 9.21260 9.79714 11.25600 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.004549 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.828804 B = 6153.785272 C = 6692.104169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.105 4.105 4 H 0.078 0.922 5 C -0.109 4.109 6 C -0.136 4.136 7 C 0.123 3.877 8 N -1.012 6.012 9 S 2.776 3.224 10 O -0.961 6.961 11 O -0.998 6.998 12 N -0.987 5.987 13 C 0.263 3.737 14 C -0.481 4.481 15 H 0.071 0.929 16 C 0.055 3.945 17 N -0.908 5.908 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.288 1.288 22 C 0.141 3.859 23 C 0.041 3.959 24 O -0.333 6.333 25 C 0.031 3.969 26 C 0.128 3.872 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.257 0.743 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.045 0.955 44 H 0.041 0.959 45 H 0.026 0.974 46 H 0.031 0.969 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.447 -15.763 -3.422 17.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.125 4.125 4 H 0.097 0.903 5 C -0.147 4.147 6 C -0.174 4.174 7 C -0.003 4.003 8 N -0.849 5.849 9 S 2.785 3.215 10 O -0.945 6.945 11 O -0.982 6.982 12 N -0.828 5.828 13 C 0.141 3.859 14 C -0.520 4.520 15 H 0.089 0.911 16 C -0.144 4.144 17 N -0.550 5.550 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.214 1.214 21 H -0.214 1.214 22 C 0.014 3.986 23 C -0.038 4.038 24 O -0.250 6.250 25 C -0.066 4.066 26 C 0.002 3.998 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.044 0.956 46 H 0.050 0.950 47 H 0.097 0.903 48 H 0.083 0.917 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.670 -15.466 -3.562 16.543 hybrid contribution 0.352 0.620 0.789 1.063 sum -4.319 -14.845 -2.773 15.708 Atomic orbital electron populations 1.21801 0.95797 1.01282 1.02083 1.21520 0.96015 0.96092 1.02034 1.21677 0.95505 0.96056 0.99229 0.90347 1.21540 1.00568 0.95638 0.96916 1.21916 0.95883 0.96847 1.02801 1.21367 0.94870 0.96477 0.87562 1.58474 1.68766 1.21175 1.36528 1.02164 0.73914 0.72528 0.72850 1.93621 1.69252 1.55841 1.75762 1.93514 1.73478 1.56133 1.75122 1.57791 1.68849 1.22375 1.33823 1.19028 0.96564 0.73231 0.97086 1.21557 1.12938 0.90613 1.26940 0.91110 1.24828 0.95647 0.97894 0.96072 1.69929 1.31154 1.11115 1.42759 0.86606 0.81135 0.80634 0.79921 1.19834 1.21435 1.21404 1.21014 0.98449 0.93848 0.85329 1.22915 0.99594 0.85013 0.96275 1.88541 1.64554 1.24070 1.47840 1.22609 0.94302 1.00823 0.88861 1.21453 0.93596 0.82309 1.02408 0.92505 0.93058 0.92644 0.91979 0.91825 0.91783 0.92196 0.90876 0.91065 0.88836 0.91849 0.95024 0.94939 0.93338 0.90797 0.90144 0.93632 0.94086 0.95598 0.95042 0.90317 0.91689 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 37.16 0.36 -0.82 16 2 C -0.12 -0.99 5.41 -26.73 -0.14 -1.14 16 3 C -0.10 -1.09 2.35 -90.28 -0.21 -1.30 16 4 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 5 C -0.11 -1.09 4.95 -26.69 -0.13 -1.23 16 6 C -0.14 -1.63 6.08 -26.61 -0.16 -1.79 16 7 C 0.12 1.74 6.37 -3.71 -0.02 1.72 16 8 N -1.01 -15.54 3.34 -113.28 -0.38 -15.91 16 9 S 2.78 55.29 6.01 -107.50 -0.65 54.64 16 10 O -0.96 -23.08 15.82 -57.17 -0.90 -23.99 16 11 O -1.00 -20.40 15.81 -57.17 -0.90 -21.31 16 12 N -0.99 -20.14 2.86 -115.67 -0.33 -20.47 16 13 C 0.26 6.49 5.04 -5.20 -0.03 6.46 16 14 C -0.48 -13.31 7.22 -34.44 -0.25 -13.56 16 15 H 0.07 1.99 6.09 -52.48 -0.32 1.67 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.91 -26.84 13.29 55.43 0.74 -26.10 16 18 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C 0.14 2.42 5.81 -4.04 -0.02 2.39 16 23 C 0.04 0.74 6.22 37.16 0.23 0.97 16 24 O -0.33 -6.97 6.62 -35.23 -0.23 -7.21 16 25 C 0.03 0.55 10.90 101.05 1.10 1.66 16 26 C 0.13 1.58 5.69 -3.49 -0.02 1.56 16 27 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.59 6.51 -51.93 -0.34 0.25 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.54 7.13 -51.93 -0.37 1.17 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.83 7.61 -51.93 -0.40 0.44 16 39 H 0.03 0.84 8.00 -51.93 -0.42 0.42 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.07 1.04 7.61 -51.93 -0.40 0.65 16 42 H 0.08 1.32 8.00 -51.93 -0.42 0.90 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.08 1.04 7.12 -51.92 -0.37 0.67 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -33.47 390.82 -10.02 -43.49 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -8.83 Total: -2.72 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 0.60 Total: -3.61 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: 0.03 Total: -62.48 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -2.04 Total: -52.50 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 55.29 SS G_CDS: -0.65 Total: 54.64 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.47 -10.02 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330380000.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.611 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds