Wall clock time and date at job start Tue Mar 31 2020 17:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47299 * 2 1 4 4 H 1.09004 * 109.49916 * 55.05701 * 3 2 1 5 5 C 1.53042 * 109.49573 * 294.99521 * 3 2 1 6 6 C 1.53032 * 109.54176 * 178.68291 * 5 3 2 7 7 C 1.53197 * 109.31112 * 61.36196 * 6 5 3 8 8 N 1.46925 * 108.77520 * 305.36616 * 7 6 5 9 9 S 1.65594 * 120.62927 * 233.58249 * 8 7 6 10 10 O 1.42104 * 106.40332 * 336.46282 * 9 8 7 11 11 O 1.42101 * 106.40149 * 203.54232 * 9 8 7 12 12 N 1.65601 * 107.21842 * 90.00507 * 9 8 7 13 13 C 1.46496 * 119.99816 * 269.99758 * 12 9 8 14 14 C 1.50697 * 109.47344 * 264.99730 * 13 12 9 15 15 H 1.08004 * 120.00030 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00160 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00073 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00002 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46965 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46973 * 120.00165 * 18 16 14 21 21 H 1.48495 * 109.46982 * 240.00063 * 18 16 14 22 22 C 1.46500 * 119.99774 * 89.99942 * 12 9 8 23 23 C 1.52996 * 109.47197 * 95.00110 * 22 12 9 24 24 O 1.42901 * 109.47091 * 64.99872 * 23 22 12 25 25 C 1.42905 * 114.00134 * 179.97438 * 24 23 22 26 26 C 1.46920 * 118.73506 * 53.86298 * 8 7 6 27 27 H 1.09004 * 109.46774 * 60.00743 * 1 2 3 28 28 H 1.08999 * 109.47065 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47355 * 300.00720 * 1 2 3 30 30 H 1.08996 * 109.47355 * 239.99279 * 2 1 3 31 31 H 1.09004 * 109.46774 * 119.99257 * 2 1 3 32 32 H 1.09005 * 109.45924 * 58.66004 * 5 3 2 33 33 H 1.08996 * 109.46065 * 298.70674 * 5 3 2 34 34 H 1.09004 * 109.49774 * 301.41725 * 6 5 3 35 35 H 1.09001 * 109.53020 * 181.33297 * 6 5 3 36 36 H 1.08999 * 109.58563 * 185.57969 * 7 6 5 37 37 H 1.08997 * 109.58482 * 65.15689 * 7 6 5 38 38 H 1.08996 * 109.47256 * 24.99968 * 13 12 9 39 39 H 1.08997 * 109.47065 * 144.99903 * 13 12 9 40 40 H 0.96997 * 119.99654 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.47119 * 334.99967 * 22 12 9 42 42 H 1.09003 * 109.46694 * 214.99745 * 22 12 9 43 43 H 1.08994 * 109.47303 * 304.99885 * 23 22 12 44 44 H 1.09002 * 109.47060 * 184.99415 * 23 22 12 45 45 H 1.09001 * 109.47103 * 300.00246 * 25 24 23 46 46 H 1.09004 * 109.47054 * 59.99750 * 25 24 23 47 47 H 1.09000 * 109.47187 * 179.97438 * 25 24 23 48 48 H 1.09002 * 109.59315 * 65.92926 * 26 8 7 49 49 H 1.09007 * 109.58534 * 186.34800 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6356 2.1273 -1.3076 6 6 2.1168 3.5799 -1.2948 7 6 3.6447 3.6066 -1.1875 8 7 4.0498 2.8263 -0.0103 9 16 5.0323 3.4909 1.1451 10 8 5.7469 4.5413 0.5084 11 8 5.6698 2.4046 1.8031 12 7 4.0509 4.2079 2.2699 13 6 3.6559 5.6095 2.1102 14 6 4.5941 6.4885 2.8965 15 1 5.4039 6.0472 3.4585 16 6 4.4187 7.8561 2.8983 17 7 3.4323 8.3934 2.2143 18 14 5.5822 8.9457 3.8723 19 1 6.5992 8.1023 4.5503 20 1 6.2589 9.8944 2.9520 21 1 4.8129 9.7063 4.8895 22 6 3.5776 3.4404 3.4245 23 6 4.5068 3.6851 4.6151 24 8 4.4222 5.0554 5.0116 25 6 5.2556 5.3915 6.1227 26 6 3.5716 1.4431 0.1190 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 0.5505 2.1050 -1.4086 33 1 2.0891 1.6019 -2.1480 34 1 1.6830 4.0993 -0.4402 35 1 1.8080 4.0741 -2.2160 36 1 3.9854 4.6361 -1.0784 37 1 4.0817 3.1681 -2.0846 38 1 3.7008 5.8818 1.0558 39 1 2.6385 5.7444 2.4773 40 1 3.3092 9.3556 2.2153 41 1 3.5744 2.3786 3.1784 42 1 2.5667 3.7569 3.6815 43 1 5.5325 3.4522 4.3294 44 1 4.2075 3.0471 5.4467 45 1 4.9715 4.7889 6.9854 46 1 6.2970 5.1939 5.8687 47 1 5.1344 6.4482 6.3613 48 1 4.0028 0.8317 -0.6736 49 1 3.8641 1.0447 1.0906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330380000.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:53 Heat of formation + Delta-G solvation = -149.774583 kcal Electronic energy + Delta-G solvation = -30017.340517 eV Core-core repulsion = 26105.261932 eV Total energy + Delta-G solvation = -3912.078585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.77022 -38.98704 -38.32200 -36.85906 -36.74990 -35.37938 -34.44011 -32.77938 -30.96713 -30.25774 -28.39721 -26.89552 -25.76360 -24.55777 -24.47325 -23.26458 -22.48741 -20.84541 -19.75487 -18.88406 -18.57749 -18.20683 -17.31685 -16.96777 -16.54376 -16.35566 -15.97381 -15.72392 -15.63189 -15.48803 -15.04947 -14.92737 -14.58455 -14.39402 -14.06410 -13.94437 -13.87084 -13.70985 -13.31891 -13.16599 -13.00620 -12.95957 -12.92086 -12.71390 -12.69294 -12.51054 -12.30078 -12.28619 -12.07249 -11.95921 -11.83526 -11.76290 -11.57847 -11.38762 -11.27523 -11.06762 -10.43757 -10.20672 -9.92437 -9.70540 -8.02525 -6.02035 -0.34666 1.38374 1.41515 1.51632 2.03023 2.49132 2.60275 3.08780 3.33434 3.39822 3.67493 3.91083 3.96622 3.99659 4.14462 4.21211 4.28049 4.40078 4.41204 4.49709 4.53140 4.57499 4.59242 4.63052 4.65637 4.78644 4.81125 4.88532 4.91524 4.93796 4.96871 5.02882 5.09484 5.12498 5.25225 5.26319 5.31807 5.35341 5.44298 5.55970 5.57449 5.63600 5.70697 5.91615 6.04397 6.33092 6.57353 7.02595 7.59457 9.07334 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.004549 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.828804 B = 6153.785272 C = 6692.104169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.101 4.101 4 H 0.066 0.934 5 C -0.104 4.104 6 C -0.132 4.132 7 C 0.117 3.883 8 N -1.004 6.004 9 S 2.786 3.214 10 O -1.010 7.010 11 O -1.005 7.005 12 N -0.991 5.991 13 C 0.282 3.718 14 C -0.482 4.482 15 H 0.064 0.936 16 C 0.004 3.996 17 N -0.939 5.939 18 Si 0.938 3.062 19 H -0.266 1.266 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.132 3.868 23 C 0.036 3.964 24 O -0.370 6.370 25 C 0.027 3.973 26 C 0.119 3.881 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.009 0.991 39 H 0.019 0.981 40 H 0.258 0.742 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.029 0.971 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.028 0.972 47 H 0.070 0.930 48 H 0.086 0.914 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 -18.131 -3.318 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.121 4.121 4 H 0.084 0.916 5 C -0.142 4.142 6 C -0.171 4.171 7 C -0.008 4.008 8 N -0.845 5.845 9 S 2.796 3.204 10 O -0.994 6.994 11 O -0.989 6.989 12 N -0.831 5.831 13 C 0.159 3.841 14 C -0.522 4.522 15 H 0.082 0.918 16 C -0.192 4.192 17 N -0.583 5.583 18 Si 0.765 3.235 19 H -0.190 1.190 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.006 3.994 23 C -0.042 4.042 24 O -0.289 6.289 25 C -0.070 4.070 26 C -0.005 4.005 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.027 0.973 39 H 0.037 0.963 40 H 0.066 0.934 41 H 0.126 0.874 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.047 0.953 47 H 0.088 0.912 48 H 0.104 0.896 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.369 -17.861 -3.426 18.963 hybrid contribution 0.561 1.243 0.731 1.547 sum -4.808 -16.619 -2.695 17.509 Atomic orbital electron populations 1.21795 0.95299 1.01919 1.01896 1.21488 0.96350 0.94423 1.02876 1.21651 0.93867 0.97556 0.99046 0.91584 1.21536 1.01490 0.93877 0.97248 1.21894 0.93918 0.98625 1.02641 1.21516 0.96675 0.94894 0.87730 1.58122 1.68345 1.22476 1.35536 1.01599 0.74029 0.71850 0.72890 1.93553 1.71223 1.57926 1.76696 1.93491 1.74040 1.55729 1.75598 1.57649 1.68815 1.21028 1.35646 1.18498 0.95186 0.75363 0.95051 1.21821 1.12805 0.91162 1.26384 0.91801 1.25531 0.97145 0.99323 0.97245 1.70029 1.32676 1.11305 1.44242 0.85803 0.79685 0.79092 0.78895 1.19009 1.21656 1.20371 1.21352 0.98630 0.95235 0.84164 1.23077 0.98912 0.84432 0.97812 1.88447 1.65215 1.25963 1.49241 1.22717 0.93861 1.01068 0.89325 1.21804 0.95128 0.80294 1.03295 0.92265 0.92032 0.93306 0.90780 0.91391 0.90417 0.90604 0.93130 0.89445 0.92061 0.89375 0.97320 0.96279 0.93358 0.87432 0.89404 0.95255 0.90144 0.92078 0.95317 0.91181 0.89596 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.67 71.98 0.70 -1.23 16 2 C -0.11 -1.53 5.41 30.59 0.17 -1.36 16 3 C -0.10 -1.85 2.35 -10.57 -0.02 -1.88 16 4 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 5 C -0.10 -1.81 4.95 30.62 0.15 -1.66 16 6 C -0.13 -3.04 6.08 30.67 0.19 -2.86 16 7 C 0.12 3.29 6.37 86.36 0.55 3.84 16 8 N -1.00 -30.22 3.34 -512.29 -1.71 -31.93 16 9 S 2.79 112.16 6.01 -56.49 -0.34 111.82 16 10 O -1.01 -50.38 15.82 -128.00 -2.03 -52.41 16 11 O -1.00 -40.46 15.81 -128.00 -2.02 -42.49 16 12 N -0.99 -40.99 2.86 -519.88 -1.48 -42.47 16 13 C 0.28 14.47 5.04 85.63 0.43 14.90 16 14 C -0.48 -27.36 7.22 25.60 0.18 -27.18 16 15 H 0.06 3.67 6.09 -2.91 -0.02 3.65 16 16 C 0.00 0.21 5.46 84.65 0.46 0.67 16 17 N -0.94 -56.98 13.29 21.45 0.28 -56.69 16 18 Si 0.94 46.39 29.54 68.60 2.03 48.42 16 19 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 22 C 0.13 4.40 5.81 86.38 0.50 4.90 16 23 C 0.04 1.25 6.22 71.98 0.45 1.70 16 24 O -0.37 -15.36 6.62 -148.98 -0.99 -16.35 16 25 C 0.03 0.93 10.90 113.37 1.24 2.17 16 26 C 0.12 2.67 5.69 86.51 0.49 3.16 16 27 H 0.06 0.72 6.54 -2.38 -0.02 0.71 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.08 1.19 6.51 -2.38 -0.02 1.17 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 2.13 7.13 -2.39 -0.02 2.11 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.01 0.49 7.61 -2.39 -0.02 0.47 16 39 H 0.02 1.02 8.00 -2.39 -0.02 1.00 16 40 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 41 H 0.11 2.82 7.61 -2.39 -0.02 2.80 16 42 H 0.09 2.80 8.00 -2.39 -0.02 2.78 16 43 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 48 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.08 1.89 7.12 -2.38 -0.02 1.88 16 Total: -1.00 -74.04 390.82 0.12 -73.92 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.90 Total: 12.99 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 5.48 Total: -4.81 kcal Atomic # 7 Polarization: -128.18 SS G_CDS: -2.91 Total: -131.10 kcal Atomic # 8 Polarization: -106.20 SS G_CDS: -5.04 Total: -111.24 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Atomic # 16 Polarization: 112.16 SS G_CDS: -0.34 Total: 111.82 kcal Total: -74.04 0.12 -73.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330380000.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.857 kcal (2) G-P(sol) polarization free energy of solvation -74.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds