Wall clock time and date at job start Tue Mar 31 2020 17:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47399 * 2 1 4 4 H 1.09001 * 109.49694 * 304.93376 * 3 2 1 5 5 C 1.53038 * 109.49877 * 64.99805 * 3 2 1 6 6 C 1.53050 * 109.53873 * 181.32033 * 5 3 2 7 7 C 1.53191 * 109.30912 * 298.63212 * 6 5 3 8 8 N 1.46936 * 108.77647 * 54.63649 * 7 6 5 9 9 S 1.65594 * 120.62951 * 126.36551 * 8 7 6 10 10 O 1.42098 * 106.40612 * 336.46320 * 9 8 7 11 11 O 1.42099 * 106.40068 * 203.53792 * 9 8 7 12 12 N 1.65599 * 107.21568 * 90.00298 * 9 8 7 13 13 C 1.46498 * 120.00182 * 89.99888 * 12 9 8 14 14 C 1.50695 * 109.47160 * 264.78721 * 13 12 9 15 15 H 1.07997 * 119.99916 * 358.49178 * 14 13 12 16 16 C 1.37881 * 119.99999 * 178.48971 * 14 13 12 17 17 N 1.31511 * 120.00120 * 6.34746 * 16 14 13 18 18 Si 1.86800 * 119.99786 * 186.34948 * 16 14 13 19 19 H 1.48506 * 109.47022 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47394 * 299.99956 * 18 16 14 21 21 H 1.48501 * 109.47304 * 60.00394 * 18 16 14 22 22 C 1.46506 * 119.99910 * 269.99379 * 12 9 8 23 23 C 1.53000 * 109.47349 * 261.69389 * 22 12 9 24 24 O 1.42904 * 109.47084 * 65.00115 * 23 22 12 25 25 C 1.42898 * 114.00180 * 179.97438 * 24 23 22 26 26 C 1.46928 * 118.73604 * 306.64390 * 8 7 6 27 27 H 1.08991 * 109.47121 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46751 * 300.00379 * 1 2 3 29 29 H 1.08999 * 109.46886 * 60.00084 * 1 2 3 30 30 H 1.08998 * 109.47492 * 239.99629 * 2 1 3 31 31 H 1.08999 * 109.46886 * 119.99916 * 2 1 3 32 32 H 1.08996 * 109.46399 * 61.29845 * 5 3 2 33 33 H 1.09004 * 109.45960 * 301.33252 * 5 3 2 34 34 H 1.08995 * 109.49405 * 178.68497 * 6 5 3 35 35 H 1.08992 * 109.52364 * 58.59671 * 6 5 3 36 36 H 1.08995 * 109.59117 * 294.85259 * 7 6 5 37 37 H 1.09002 * 109.58842 * 174.42091 * 7 6 5 38 38 H 1.09002 * 109.47040 * 144.78670 * 13 12 9 39 39 H 1.09003 * 109.46988 * 24.78925 * 13 12 9 40 40 H 0.97002 * 120.00039 * 354.59109 * 17 16 14 41 41 H 1.08998 * 109.46888 * 21.69543 * 22 12 9 42 42 H 1.09005 * 109.46916 * 141.69489 * 22 12 9 43 43 H 1.08998 * 109.47118 * 185.00035 * 23 22 12 44 44 H 1.09003 * 109.47036 * 305.00202 * 23 22 12 45 45 H 1.08998 * 109.46912 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.46986 * 300.00186 * 25 24 23 47 47 H 1.09005 * 109.46760 * 59.99943 * 25 24 23 48 48 H 1.08999 * 109.58271 * 173.14427 * 26 8 7 49 49 H 1.09003 * 109.58101 * 293.56753 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6067 1.9816 -0.8424 5 6 1.6356 2.1273 1.3074 6 6 2.1168 3.5801 1.2945 7 6 3.6447 3.6067 1.1874 8 7 4.0500 2.8262 0.0103 9 16 5.0317 3.4911 -1.1457 10 8 4.8697 4.8994 -1.0482 11 8 4.7934 2.7622 -2.3420 12 7 6.5952 3.1687 -0.7054 13 6 7.2481 1.9413 -1.1675 14 6 7.1153 0.8738 -0.1121 15 1 6.6177 1.0954 0.8204 16 6 7.6289 -0.3858 -0.3372 17 7 8.3423 -0.6219 -1.4164 18 14 7.3113 -1.7571 0.8909 19 1 7.9673 -3.0039 0.4214 20 1 7.8659 -1.3747 2.2143 21 1 5.8487 -1.9828 1.0136 22 6 7.3256 4.1110 0.1460 23 6 8.2154 5.0008 -0.7243 24 8 7.3968 5.8115 -1.5697 25 6 8.1334 6.6851 -2.4278 26 6 3.5626 1.4467 -0.1246 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0890 1.6021 2.1480 33 1 0.5504 2.1052 1.4083 34 1 1.8080 4.0738 2.2158 35 1 1.6832 4.0998 0.4402 36 1 4.0816 3.1682 2.0845 37 1 3.9856 4.6362 1.0781 38 1 8.3038 2.1392 -1.3533 39 1 6.7743 1.6024 -2.0888 40 1 8.4418 0.0668 -2.0923 41 1 6.6159 4.7313 0.6934 42 1 7.9448 3.5578 0.8523 43 1 8.8243 5.6409 -0.0859 44 1 8.8647 4.3761 -1.3378 45 1 7.4404 7.2653 -3.0370 46 1 8.7404 7.3601 -1.8245 47 1 8.7813 6.0957 -3.0766 48 1 3.8492 1.0516 -1.0992 49 1 3.9927 0.8286 0.6635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330380001.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:57 Heat of formation + Delta-G solvation = -140.256642 kcal Electronic energy + Delta-G solvation = -29883.156578 eV Core-core repulsion = 25971.490722 eV Total energy + Delta-G solvation = -3911.665856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.65294 -37.78632 -36.57169 -35.51561 -35.07488 -34.30504 -32.76840 -31.63056 -29.38251 -29.28788 -26.42198 -25.66483 -24.66627 -23.40641 -23.03589 -21.71386 -21.38041 -19.80059 -18.33506 -17.26854 -17.06915 -16.64565 -16.19447 -15.54383 -15.42871 -14.82424 -14.67132 -14.58513 -14.34490 -14.09025 -13.77575 -13.64844 -13.34814 -13.14259 -12.76083 -12.68477 -12.58087 -12.01839 -11.88511 -11.85387 -11.68544 -11.53980 -11.41397 -11.36077 -11.25514 -11.02245 -10.91490 -10.88180 -10.85263 -10.59021 -10.56870 -10.38920 -10.24277 -10.14601 -10.02186 -9.40766 -9.34159 -8.55237 -8.44556 -7.89594 -6.43353 -4.17709 1.33696 3.36949 3.38490 3.52908 3.57755 4.13228 4.17264 4.46163 4.80690 4.81504 4.97163 5.07416 5.19868 5.28908 5.29661 5.34052 5.36405 5.40793 5.49007 5.54395 5.58524 5.59566 5.64431 5.70669 5.72414 5.82104 5.86042 5.88682 5.95571 5.98464 6.04422 6.09565 6.18726 6.21242 6.28131 6.29265 6.38719 6.44032 6.62624 6.64481 6.96247 7.05905 7.25889 7.44558 7.58847 7.97853 8.39107 8.74326 9.53701 10.93247 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008663 B = 0.006509 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3231.266426 B = 4300.825280 C = 6654.444132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.101 4.101 4 H 0.070 0.930 5 C -0.111 4.111 6 C -0.130 4.130 7 C 0.121 3.879 8 N -1.004 6.004 9 S 2.787 3.213 10 O -0.977 6.977 11 O -0.984 6.984 12 N -0.984 5.984 13 C 0.236 3.764 14 C -0.615 4.615 15 H 0.057 0.943 16 C 0.023 3.977 17 N -0.906 5.906 18 Si 1.064 2.936 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.285 1.285 22 C 0.138 3.862 23 C 0.040 3.960 24 O -0.373 6.373 25 C 0.031 3.969 26 C 0.131 3.869 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.023 0.977 39 H 0.039 0.961 40 H 0.270 0.730 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.081 0.919 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.092 0.908 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.919 8.031 5.859 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.121 4.121 4 H 0.089 0.911 5 C -0.149 4.149 6 C -0.169 4.169 7 C -0.006 4.006 8 N -0.842 5.842 9 S 2.797 3.203 10 O -0.961 6.961 11 O -0.968 6.968 12 N -0.824 5.824 13 C 0.114 3.886 14 C -0.655 4.655 15 H 0.075 0.925 16 C -0.182 4.182 17 N -0.542 5.542 18 Si 0.892 3.108 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.212 1.212 22 C 0.011 3.989 23 C -0.039 4.039 24 O -0.291 6.291 25 C -0.066 4.066 26 C 0.006 3.994 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.041 0.959 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.111 0.889 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.004 6.913 5.412 12.576 hybrid contribution 0.259 1.376 0.019 1.400 sum -8.745 8.288 5.431 13.217 Atomic orbital electron populations 1.21795 0.96056 1.01258 1.01640 1.21518 0.95595 0.96082 1.02666 1.21470 0.96235 0.96149 0.98292 0.91119 1.21572 1.00333 0.95372 0.97608 1.21858 0.95935 0.97207 1.01929 1.21325 0.95020 0.95806 0.88404 1.58187 1.64776 1.22896 1.38349 1.01755 0.72596 0.72679 0.73312 1.93566 1.85972 1.29725 1.86861 1.93536 1.85032 1.74281 1.43961 1.57589 1.29627 1.30851 1.64316 1.19205 0.93410 0.80253 0.95780 1.22342 1.42499 0.97128 1.03501 0.92462 1.25740 0.93029 0.99192 1.00265 1.70779 1.35216 1.38568 1.09631 0.83614 0.76400 0.76020 0.74740 1.20750 1.21547 1.21165 1.21052 0.96168 0.89573 0.92086 1.23103 0.94153 0.93017 0.93635 1.88104 1.32666 1.54516 1.53833 1.22700 0.96883 0.93328 0.93709 1.21291 0.92574 0.81817 1.03729 0.92990 0.92707 0.92913 0.91441 0.91677 0.91815 0.91933 0.91253 0.91744 0.91848 0.89556 0.95885 0.94303 0.91979 0.90773 0.88866 0.93049 0.92794 0.90028 0.94577 0.94493 0.88932 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 37.16 0.36 -1.18 16 2 C -0.12 -1.49 5.41 -26.73 -0.14 -1.64 16 3 C -0.10 -1.41 2.32 -90.73 -0.21 -1.62 16 4 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 5 C -0.11 -1.31 4.95 -26.69 -0.13 -1.44 16 6 C -0.13 -1.57 6.08 -26.61 -0.16 -1.73 16 7 C 0.12 1.73 6.48 -3.71 -0.02 1.70 16 8 N -1.00 -17.76 3.35 -113.76 -0.38 -18.15 16 9 S 2.79 58.64 6.10 -107.50 -0.66 57.98 16 10 O -0.98 -20.95 14.23 -64.11 -0.91 -21.86 16 11 O -0.98 -23.96 15.27 -57.17 -0.87 -24.84 16 12 N -0.98 -20.78 2.78 -115.66 -0.32 -21.10 16 13 C 0.24 5.82 4.75 -5.20 -0.02 5.79 16 14 C -0.62 -15.91 9.38 -34.44 -0.32 -16.24 16 15 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 16 C 0.02 0.63 5.45 -17.82 -0.10 0.53 16 17 N -0.91 -26.36 13.65 55.43 0.76 -25.60 16 18 Si 1.06 23.91 29.91 -169.99 -5.08 18.82 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 22 C 0.14 2.45 5.81 -4.04 -0.02 2.42 16 23 C 0.04 0.65 6.26 37.16 0.23 0.89 16 24 O -0.37 -6.79 9.24 -50.65 -0.47 -7.25 16 25 C 0.03 0.43 11.01 101.05 1.11 1.54 16 26 C 0.13 2.28 5.73 -3.93 -0.02 2.26 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.51 6.54 -51.93 -0.34 0.17 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.64 6.51 -51.93 -0.34 0.30 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.23 6.92 -51.93 -0.36 0.88 16 38 H 0.02 0.58 7.56 -51.93 -0.39 0.19 16 39 H 0.04 1.06 6.85 -51.93 -0.36 0.70 16 40 H 0.27 7.86 7.25 -40.82 -0.30 7.56 16 41 H 0.07 1.20 7.49 -51.93 -0.39 0.81 16 42 H 0.09 1.58 8.13 -51.93 -0.42 1.16 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.92 7.79 -51.93 -0.40 0.52 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 1.83 6.91 -51.93 -0.36 1.47 16 49 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -32.52 392.89 -10.26 -42.77 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.78 Total: 2.01 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 0.54 Total: -8.71 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: 0.05 Total: -64.84 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -2.25 Total: -53.95 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.08 Total: 18.82 kcal Atomic # 16 Polarization: 58.64 SS G_CDS: -0.66 Total: 57.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.52 -10.26 -42.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330380001.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.483 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds