Wall clock time and date at job start Tue Mar 31 2020 17:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47399 * 2 1 4 4 H 1.09001 * 109.49694 * 304.93376 * 3 2 1 5 5 C 1.53038 * 109.49877 * 64.99805 * 3 2 1 6 6 C 1.53050 * 109.53873 * 181.32033 * 5 3 2 7 7 C 1.53191 * 109.30912 * 298.63212 * 6 5 3 8 8 N 1.46936 * 108.77647 * 54.63649 * 7 6 5 9 9 S 1.65594 * 120.62951 * 126.36551 * 8 7 6 10 10 O 1.42098 * 106.40612 * 336.46320 * 9 8 7 11 11 O 1.42099 * 106.40068 * 203.53792 * 9 8 7 12 12 N 1.65599 * 107.21568 * 90.00298 * 9 8 7 13 13 C 1.46498 * 120.00182 * 89.99888 * 12 9 8 14 14 C 1.50695 * 109.47160 * 264.78721 * 13 12 9 15 15 H 1.07997 * 119.99916 * 358.49178 * 14 13 12 16 16 C 1.37881 * 119.99999 * 178.48971 * 14 13 12 17 17 N 1.31511 * 120.00120 * 6.34746 * 16 14 13 18 18 Si 1.86800 * 119.99786 * 186.34948 * 16 14 13 19 19 H 1.48506 * 109.47022 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47394 * 299.99956 * 18 16 14 21 21 H 1.48501 * 109.47304 * 60.00394 * 18 16 14 22 22 C 1.46506 * 119.99910 * 269.99379 * 12 9 8 23 23 C 1.53000 * 109.47349 * 261.69389 * 22 12 9 24 24 O 1.42904 * 109.47084 * 65.00115 * 23 22 12 25 25 C 1.42898 * 114.00180 * 179.97438 * 24 23 22 26 26 C 1.46928 * 118.73604 * 306.64390 * 8 7 6 27 27 H 1.08991 * 109.47121 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46751 * 300.00379 * 1 2 3 29 29 H 1.08999 * 109.46886 * 60.00084 * 1 2 3 30 30 H 1.08998 * 109.47492 * 239.99629 * 2 1 3 31 31 H 1.08999 * 109.46886 * 119.99916 * 2 1 3 32 32 H 1.08996 * 109.46399 * 61.29845 * 5 3 2 33 33 H 1.09004 * 109.45960 * 301.33252 * 5 3 2 34 34 H 1.08995 * 109.49405 * 178.68497 * 6 5 3 35 35 H 1.08992 * 109.52364 * 58.59671 * 6 5 3 36 36 H 1.08995 * 109.59117 * 294.85259 * 7 6 5 37 37 H 1.09002 * 109.58842 * 174.42091 * 7 6 5 38 38 H 1.09002 * 109.47040 * 144.78670 * 13 12 9 39 39 H 1.09003 * 109.46988 * 24.78925 * 13 12 9 40 40 H 0.97002 * 120.00039 * 354.59109 * 17 16 14 41 41 H 1.08998 * 109.46888 * 21.69543 * 22 12 9 42 42 H 1.09005 * 109.46916 * 141.69489 * 22 12 9 43 43 H 1.08998 * 109.47118 * 185.00035 * 23 22 12 44 44 H 1.09003 * 109.47036 * 305.00202 * 23 22 12 45 45 H 1.08998 * 109.46912 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.46986 * 300.00186 * 25 24 23 47 47 H 1.09005 * 109.46760 * 59.99943 * 25 24 23 48 48 H 1.08999 * 109.58271 * 173.14427 * 26 8 7 49 49 H 1.09003 * 109.58101 * 293.56753 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6067 1.9816 -0.8424 5 6 1.6356 2.1273 1.3074 6 6 2.1168 3.5801 1.2945 7 6 3.6447 3.6067 1.1874 8 7 4.0500 2.8262 0.0103 9 16 5.0317 3.4911 -1.1457 10 8 4.8697 4.8994 -1.0482 11 8 4.7934 2.7622 -2.3420 12 7 6.5952 3.1687 -0.7054 13 6 7.2481 1.9413 -1.1675 14 6 7.1153 0.8738 -0.1121 15 1 6.6177 1.0954 0.8204 16 6 7.6289 -0.3858 -0.3372 17 7 8.3423 -0.6219 -1.4164 18 14 7.3113 -1.7571 0.8909 19 1 7.9673 -3.0039 0.4214 20 1 7.8659 -1.3747 2.2143 21 1 5.8487 -1.9828 1.0136 22 6 7.3256 4.1110 0.1460 23 6 8.2154 5.0008 -0.7243 24 8 7.3968 5.8115 -1.5697 25 6 8.1334 6.6851 -2.4278 26 6 3.5626 1.4467 -0.1246 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0890 1.6021 2.1480 33 1 0.5504 2.1052 1.4083 34 1 1.8080 4.0738 2.2158 35 1 1.6832 4.0998 0.4402 36 1 4.0816 3.1682 2.0845 37 1 3.9856 4.6362 1.0781 38 1 8.3038 2.1392 -1.3533 39 1 6.7743 1.6024 -2.0888 40 1 8.4418 0.0668 -2.0923 41 1 6.6159 4.7313 0.6934 42 1 7.9448 3.5578 0.8523 43 1 8.8243 5.6409 -0.0859 44 1 8.8647 4.3761 -1.3378 45 1 7.4404 7.2653 -3.0370 46 1 8.7404 7.3601 -1.8245 47 1 8.7813 6.0957 -3.0766 48 1 3.8492 1.0516 -1.0992 49 1 3.9927 0.8286 0.6635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330380001.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:56 Heat of formation + Delta-G solvation = -161.561863 kcal Electronic energy + Delta-G solvation = -29884.080442 eV Core-core repulsion = 25971.490722 eV Total energy + Delta-G solvation = -3912.589720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.81242 -39.14983 -38.33218 -37.19672 -36.84412 -35.42319 -34.74111 -32.76466 -30.92884 -30.34873 -28.12594 -27.04496 -25.77848 -24.96133 -24.53015 -23.21020 -22.50809 -20.91548 -19.95152 -18.97006 -18.74617 -18.36450 -17.62359 -17.06133 -16.75248 -16.09208 -15.94006 -15.74667 -15.65111 -15.55987 -15.39371 -15.05208 -14.63498 -14.41394 -14.16043 -14.06259 -13.88011 -13.61377 -13.56002 -13.17310 -13.10329 -13.02856 -12.99266 -12.73672 -12.71968 -12.45075 -12.34879 -12.32237 -12.07343 -11.97201 -11.88387 -11.80533 -11.63961 -11.36498 -11.22469 -11.10800 -10.61940 -10.52036 -9.92357 -9.69085 -8.59761 -6.35661 -0.31391 1.55599 1.63145 1.81088 1.96626 2.54861 2.59480 2.90381 3.18902 3.37413 3.69025 3.87373 3.91439 3.99275 4.10723 4.12038 4.19752 4.20771 4.37574 4.45515 4.46176 4.48505 4.51793 4.55081 4.63764 4.73655 4.76323 4.81809 4.82912 4.84377 4.93978 4.95371 4.97967 5.05002 5.06798 5.17862 5.21193 5.29526 5.33701 5.40123 5.51988 5.56827 5.62211 5.87517 5.89865 6.24906 6.30254 6.54439 7.44874 8.75540 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008663 B = 0.006509 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3231.266426 B = 4300.825280 C = 6654.444132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.098 4.098 4 H 0.060 0.940 5 C -0.106 4.106 6 C -0.127 4.127 7 C 0.110 3.890 8 N -1.001 6.001 9 S 2.793 3.207 10 O -0.982 6.982 11 O -1.027 7.027 12 N -0.989 5.989 13 C 0.252 3.748 14 C -0.608 4.608 15 H 0.066 0.934 16 C -0.028 4.028 17 N -0.936 5.936 18 Si 1.107 2.893 19 H -0.290 1.290 20 H -0.266 1.266 21 H -0.265 1.265 22 C 0.129 3.871 23 C 0.039 3.961 24 O -0.407 6.407 25 C 0.023 3.977 26 C 0.130 3.870 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.012 0.988 39 H 0.004 0.996 40 H 0.254 0.746 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.039 0.961 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.038 0.962 48 H 0.056 0.944 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.452 8.688 8.985 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.118 4.118 4 H 0.078 0.922 5 C -0.144 4.144 6 C -0.166 4.166 7 C -0.014 4.014 8 N -0.842 5.842 9 S 2.803 3.197 10 O -0.966 6.966 11 O -1.011 7.011 12 N -0.828 5.828 13 C 0.127 3.873 14 C -0.647 4.647 15 H 0.084 0.916 16 C -0.227 4.227 17 N -0.574 5.574 18 Si 0.929 3.071 19 H -0.216 1.216 20 H -0.191 1.191 21 H -0.190 1.190 22 C 0.003 3.997 23 C -0.039 4.039 24 O -0.326 6.326 25 C -0.073 4.073 26 C 0.004 3.996 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.029 0.971 39 H 0.022 0.978 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.057 0.943 45 H 0.107 0.893 46 H 0.082 0.918 47 H 0.056 0.944 48 H 0.074 0.926 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.536 7.628 8.546 15.564 hybrid contribution 0.740 1.272 -0.978 1.767 sum -9.796 8.900 7.568 15.246 Atomic orbital electron populations 1.21759 0.93985 1.02185 1.02296 1.21531 0.97367 0.94847 1.02173 1.21456 0.93247 0.97487 0.99608 0.92153 1.21575 1.01903 0.94812 0.96083 1.21888 0.93751 0.97713 1.03283 1.21683 0.97120 0.95331 0.87304 1.57976 1.63935 1.23284 1.38976 1.01351 0.72772 0.72357 0.73209 1.93546 1.86089 1.29911 1.87047 1.93477 1.85646 1.75106 1.46880 1.57506 1.30033 1.30233 1.64996 1.18772 0.92476 0.81664 0.94366 1.22563 1.41283 0.97222 1.03622 0.91575 1.27191 0.92354 1.02057 1.01080 1.70910 1.37579 1.38270 1.10614 0.83080 0.77523 0.72969 0.73554 1.21623 1.19136 1.18951 1.21358 0.96762 0.89398 0.92162 1.23124 0.93762 0.93287 0.93715 1.88043 1.34452 1.55345 1.54750 1.22918 0.97280 0.93284 0.93845 1.21317 0.95313 0.81344 1.01584 0.91996 0.91140 0.93127 0.93147 0.91059 0.90942 0.89492 0.87905 0.92561 0.90151 0.89592 0.97053 0.97834 0.93614 0.88964 0.88108 0.89295 0.94304 0.89283 0.91831 0.94361 0.92586 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.67 71.98 0.70 -1.92 16 2 C -0.12 -2.84 5.41 30.59 0.17 -2.68 16 3 C -0.10 -2.61 2.32 -10.86 -0.03 -2.63 16 4 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 5 C -0.11 -2.15 4.95 30.62 0.15 -2.00 16 6 C -0.13 -2.66 6.08 30.68 0.19 -2.47 16 7 C 0.11 2.91 6.48 86.36 0.56 3.47 16 8 N -1.00 -35.15 3.35 -513.82 -1.72 -36.87 16 9 S 2.79 120.30 6.10 -56.49 -0.34 119.96 16 10 O -0.98 -42.17 14.23 -121.37 -1.73 -43.89 16 11 O -1.03 -52.87 15.27 -128.00 -1.95 -54.83 16 12 N -0.99 -42.55 2.78 -519.84 -1.44 -44.00 16 13 C 0.25 12.91 4.75 85.63 0.41 13.32 16 14 C -0.61 -31.84 9.38 25.60 0.24 -31.60 16 15 H 0.07 3.29 7.82 -2.91 -0.02 3.27 16 16 C -0.03 -1.54 5.45 84.66 0.46 -1.08 16 17 N -0.94 -56.17 13.65 21.45 0.29 -55.88 16 18 Si 1.11 47.46 29.91 68.60 2.05 49.51 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 22 C 0.13 4.47 5.81 86.38 0.50 4.97 16 23 C 0.04 1.27 6.26 71.98 0.45 1.72 16 24 O -0.41 -14.61 9.24 -134.23 -1.24 -15.85 16 25 C 0.02 0.61 11.01 113.37 1.25 1.86 16 26 C 0.13 4.55 5.73 86.22 0.49 5.04 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.06 6.54 -2.39 -0.02 1.04 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.39 6.51 -2.38 -0.02 1.37 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.09 2.28 6.92 -2.39 -0.02 2.27 16 38 H 0.01 0.61 7.56 -2.39 -0.02 0.59 16 39 H 0.00 0.22 6.85 -2.39 -0.02 0.20 16 40 H 0.25 15.62 7.25 -92.71 -0.67 14.95 16 41 H 0.09 2.85 7.49 -2.39 -0.02 2.83 16 42 H 0.10 3.30 8.13 -2.38 -0.02 3.28 16 43 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.04 1.35 7.79 -2.39 -0.02 1.33 16 45 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.06 2.35 6.91 -2.39 -0.02 2.33 16 49 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -72.86 392.89 0.45 -72.41 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 1.00 Total: 23.42 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 5.54 Total: -13.98 kcal Atomic # 7 Polarization: -133.87 SS G_CDS: -2.88 Total: -136.74 kcal Atomic # 8 Polarization: -109.65 SS G_CDS: -4.92 Total: -114.57 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.05 Total: 49.51 kcal Atomic # 16 Polarization: 120.30 SS G_CDS: -0.34 Total: 119.96 kcal Total: -72.86 0.45 -72.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330380001.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.150 kcal (2) G-P(sol) polarization free energy of solvation -72.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds