Wall clock time and date at job start Tue Mar 31 2020 17:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 H 1.09008 * 109.99607 * 53.76578 * 3 2 1 5 5 C 1.54330 * 109.98991 * 292.72817 * 3 2 1 6 6 C 1.55160 * 103.01848 * 218.66234 * 5 3 2 7 7 H 1.09001 * 111.00724 * 277.23288 * 6 5 3 8 8 C 1.53004 * 111.00377 * 153.38180 * 6 5 3 9 9 C 1.54910 * 101.58188 * 35.30868 * 6 5 3 10 10 N 1.47024 * 109.88160 * 174.85920 * 3 2 1 11 11 S 1.65596 * 125.64797 * 298.39498 * 10 3 2 12 12 O 1.42107 * 106.39862 * 158.97150 * 11 10 3 13 13 O 1.42101 * 106.40225 * 26.05302 * 11 10 3 14 14 N 1.65597 * 107.21842 * 272.50923 * 11 10 3 15 15 C 1.46504 * 119.99681 * 84.25940 * 14 11 10 16 16 C 1.50705 * 109.46494 * 264.99345 * 15 14 11 17 17 H 1.08000 * 120.00440 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99876 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99847 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00237 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47310 * 59.99756 * 20 18 16 22 22 H 1.48498 * 109.47030 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46510 * 299.99763 * 20 18 16 24 24 C 1.46497 * 120.00034 * 264.25243 * 14 11 10 25 25 C 1.52998 * 109.47045 * 262.43837 * 24 14 11 26 26 O 1.42901 * 109.47425 * 65.42724 * 25 24 14 27 27 C 1.42893 * 114.00746 * 175.09060 * 26 25 24 28 28 H 1.09000 * 109.46994 * 305.25950 * 1 2 3 29 29 H 1.08999 * 109.47348 * 65.26459 * 1 2 3 30 30 H 1.09006 * 109.46888 * 185.26481 * 1 2 3 31 31 H 1.09003 * 109.47247 * 240.00349 * 2 1 3 32 32 H 1.08999 * 109.47531 * 120.00169 * 2 1 3 33 33 H 1.09007 * 110.85042 * 100.20254 * 5 3 2 34 34 H 1.08999 * 110.52112 * 336.97473 * 5 3 2 35 35 H 1.08997 * 109.46862 * 306.35418 * 8 6 5 36 36 H 1.09002 * 109.46735 * 66.35003 * 8 6 5 37 37 H 1.08997 * 109.47042 * 186.35103 * 8 6 5 38 38 H 1.09000 * 110.36917 * 204.14736 * 9 6 5 39 39 H 1.09004 * 110.36536 * 81.82686 * 9 6 5 40 40 H 1.08998 * 109.47629 * 24.99298 * 15 14 11 41 41 H 1.08997 * 109.47289 * 145.00164 * 15 14 11 42 42 H 0.96999 * 119.99932 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.47067 * 142.44140 * 24 14 11 44 44 H 1.08997 * 109.47125 * 22.43953 * 24 14 11 45 45 H 1.08998 * 109.47877 * 305.42077 * 25 24 14 46 46 H 1.09010 * 109.47101 * 185.42075 * 25 24 14 47 47 H 1.09004 * 109.46840 * 300.00008 * 27 26 25 48 48 H 1.09005 * 109.46714 * 59.99409 * 27 26 25 49 49 H 1.08993 * 109.47444 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5934 1.9958 0.8263 5 6 1.6876 2.1267 -1.3377 6 6 2.9458 2.9852 -1.6334 7 1 2.9073 3.9328 -1.0961 8 6 3.1113 3.2161 -3.1368 9 6 4.0761 2.0803 -1.0828 10 7 3.5050 1.4549 0.1239 11 16 4.3704 0.8588 1.4037 12 8 5.6856 0.6191 0.9218 13 8 3.5646 -0.1495 1.9981 14 7 4.4959 2.0757 2.5199 15 6 3.4137 2.3025 3.4810 16 6 2.4892 3.3694 2.9536 17 1 2.6876 3.8319 1.9980 18 6 1.3900 3.7551 3.6911 19 7 1.1481 3.1916 4.8546 20 14 0.2435 5.0771 3.0373 21 1 -0.3310 4.6370 1.7406 22 1 -0.8527 5.3080 4.0121 23 1 1.0033 6.3376 2.8397 24 6 5.6892 2.9252 2.5463 25 6 6.6554 2.4142 3.6169 26 8 7.1324 1.1185 3.2487 27 6 8.1295 0.5946 4.1281 28 1 -0.3633 0.5933 0.8391 29 1 -0.3634 0.4300 -0.9333 30 1 -0.3633 -1.0234 0.0943 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 0.8061 2.7589 -1.2298 34 1 1.5363 1.3823 -2.1194 35 1 3.1032 2.2570 -3.6547 36 1 2.2903 3.8331 -3.5021 37 1 4.0580 3.7225 -3.3245 38 1 4.9489 2.6792 -0.8229 39 1 4.3425 1.3181 -1.8152 40 1 2.8559 1.3772 3.6252 41 1 3.8350 2.6251 4.4331 42 1 0.3749 3.4632 5.3737 43 1 5.4002 3.9505 2.7773 44 1 6.1776 2.8960 1.5723 45 1 6.1376 2.3523 4.5740 46 1 7.4979 3.1005 3.7033 47 1 8.9906 1.2628 4.1402 48 1 7.7192 0.5123 5.1346 49 1 8.4389 -0.3910 3.7805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330381361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:46 Heat of formation + Delta-G solvation = -131.111739 kcal Electronic energy + Delta-G solvation = -30229.526949 eV Core-core repulsion = 26318.257646 eV Total energy + Delta-G solvation = -3911.269303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.74374 -37.71808 -36.46087 -35.35807 -34.99454 -33.41354 -32.58626 -31.79947 -29.42596 -27.96574 -26.70848 -25.87742 -25.76032 -23.16399 -22.99257 -21.46872 -20.37792 -20.18939 -18.17423 -17.09905 -16.91584 -16.32753 -16.17710 -15.82169 -15.27425 -15.03458 -14.48222 -14.40629 -14.31056 -13.71125 -13.65185 -13.25081 -12.98292 -12.85465 -12.66849 -12.54857 -12.44891 -11.96720 -11.91593 -11.70003 -11.55799 -11.48808 -11.46824 -11.17650 -11.12134 -11.07510 -10.99627 -10.87622 -10.65194 -10.59532 -10.49635 -10.44930 -10.34988 -10.03131 -9.79279 -9.76225 -9.29887 -8.51364 -8.43736 -7.98846 -6.11399 -4.17791 1.41634 3.23518 3.30163 3.30354 3.65163 4.19855 4.26806 4.35495 4.66062 4.88665 5.01056 5.20285 5.25198 5.36457 5.41983 5.49009 5.52708 5.56222 5.62067 5.64955 5.68232 5.68594 5.70897 5.78687 5.83595 5.87247 5.92154 5.96018 5.98655 6.13745 6.16328 6.17454 6.29812 6.37625 6.46127 6.51099 6.56137 6.60027 6.88766 6.92762 6.99751 7.37525 7.46605 7.53400 7.71214 7.87051 8.16310 8.87518 9.47701 10.96274 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008677 B = 0.006865 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.015373 B = 4077.841851 C = 5686.733499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.155 4.155 3 C 0.149 3.851 4 H 0.097 0.903 5 C -0.117 4.117 6 C -0.106 4.106 7 H 0.086 0.914 8 C -0.139 4.139 9 C 0.133 3.867 10 N -1.013 6.013 11 S 2.800 3.200 12 O -0.980 6.980 13 O -0.978 6.978 14 N -0.988 5.988 15 C 0.246 3.754 16 C -0.537 4.537 17 H 0.063 0.937 18 C 0.065 3.935 19 N -0.889 5.889 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.137 3.863 25 C 0.040 3.960 26 O -0.377 6.377 27 C 0.032 3.968 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.034 0.966 42 H 0.264 0.736 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.617 -0.278 -9.960 11.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.194 4.194 3 C 0.043 3.957 4 H 0.115 0.885 5 C -0.156 4.156 6 C -0.126 4.126 7 H 0.104 0.896 8 C -0.197 4.197 9 C 0.007 3.993 10 N -0.850 5.850 11 S 2.811 3.189 12 O -0.965 6.965 13 O -0.962 6.962 14 N -0.828 5.828 15 C 0.124 3.876 16 C -0.576 4.576 17 H 0.081 0.919 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.717 3.283 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.009 3.991 25 C -0.039 4.039 26 O -0.295 6.295 27 C -0.065 4.065 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.830 -1.300 -9.778 11.458 hybrid contribution -0.737 1.403 0.119 1.590 sum 5.093 0.103 -9.658 10.920 Atomic orbital electron populations 1.21679 0.95530 1.01415 1.01651 1.22287 0.96334 0.97010 1.03794 1.21459 0.79277 0.96018 0.98921 0.88476 1.22756 0.97669 0.98485 0.96669 1.22388 0.95127 0.99052 0.96050 0.89606 1.21695 1.01588 1.01602 0.94793 1.21853 0.95795 0.94982 0.86674 1.59189 1.16021 1.77051 1.32738 1.01357 0.72082 0.73646 0.71851 1.93559 1.37254 1.84694 1.80953 1.93502 1.70599 1.55569 1.76531 1.57736 1.25943 1.50817 1.48313 1.19147 0.83091 0.97739 0.87600 1.21526 1.09090 1.21484 1.05506 0.91889 1.24943 0.97551 0.96465 0.94810 1.69930 1.28493 1.42039 1.12235 0.86697 0.80499 0.82200 0.78867 1.19953 1.21284 1.20304 1.21064 0.84328 0.95312 0.98361 1.23124 0.96578 0.84697 0.99486 1.88066 1.57163 1.33151 1.51123 1.22692 0.90871 0.99066 0.93908 0.92058 0.93286 0.93016 0.92663 0.88467 0.90681 0.91129 0.92601 0.92513 0.92572 0.91462 0.92158 0.93335 0.94767 0.92583 0.88851 0.90737 0.92526 0.93117 0.94585 0.94440 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.68 37.16 0.36 -1.79 16 2 C -0.16 -2.65 5.40 -26.73 -0.14 -2.79 16 3 C 0.15 2.61 3.12 -66.95 -0.21 2.40 16 4 H 0.10 1.98 7.19 -51.92 -0.37 1.61 16 5 C -0.12 -1.61 5.19 -24.89 -0.13 -1.74 16 6 C -0.11 -1.38 3.64 -88.47 -0.32 -1.70 16 7 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 8 C -0.14 -1.39 9.29 37.16 0.35 -1.05 16 9 C 0.13 1.97 6.43 -2.53 -0.02 1.96 16 10 N -1.01 -18.38 3.46 -104.41 -0.36 -18.74 16 11 S 2.80 59.49 6.29 -107.50 -0.68 58.82 16 12 O -0.98 -21.52 15.23 -63.30 -0.96 -22.49 16 13 O -0.98 -23.49 13.88 -57.17 -0.79 -24.28 16 14 N -0.99 -20.88 2.78 -115.66 -0.32 -21.20 16 15 C 0.25 6.05 5.44 -5.19 -0.03 6.02 16 16 C -0.54 -13.55 8.45 -34.44 -0.29 -13.85 16 17 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 18 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -24.86 13.29 55.43 0.74 -24.13 16 20 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.14 2.43 5.81 -4.04 -0.02 2.41 16 25 C 0.04 0.66 6.26 37.16 0.23 0.89 16 26 O -0.38 -6.94 9.46 -47.87 -0.45 -7.39 16 27 C 0.03 0.44 11.01 101.05 1.11 1.55 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.85 8.02 -51.93 -0.42 0.43 16 32 H 0.10 1.96 5.49 -51.93 -0.29 1.67 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.87 7.63 -51.93 -0.40 0.47 16 35 H 0.05 0.53 8.11 -51.93 -0.42 0.11 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.83 8.04 -51.93 -0.42 0.41 16 40 H 0.05 1.33 7.00 -51.93 -0.36 0.97 16 41 H 0.03 0.87 7.82 -51.93 -0.41 0.47 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.09 1.56 8.13 -51.93 -0.42 1.14 16 44 H 0.07 1.24 7.36 -51.93 -0.38 0.86 16 45 H 0.06 0.97 7.85 -51.93 -0.41 0.57 16 46 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 47 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 396.39 15.07 5.97 5.97 Total: -1.00 -31.40 396.39 -9.97 -41.37 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.88 Total: 3.01 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 0.79 Total: -6.06 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: 0.05 Total: -64.07 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -2.21 Total: -54.16 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 59.49 SS G_CDS: -0.68 Total: 58.82 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.40 -9.97 -41.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330381361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.742 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds