Wall clock time and date at job start Tue Mar 31 2020 17:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 H 1.09008 * 109.99607 * 53.76578 * 3 2 1 5 5 C 1.54330 * 109.98991 * 292.72817 * 3 2 1 6 6 C 1.55160 * 103.01848 * 218.66234 * 5 3 2 7 7 H 1.09001 * 111.00724 * 277.23288 * 6 5 3 8 8 C 1.53004 * 111.00377 * 153.38180 * 6 5 3 9 9 C 1.54910 * 101.58188 * 35.30868 * 6 5 3 10 10 N 1.47024 * 109.88160 * 174.85920 * 3 2 1 11 11 S 1.65596 * 125.64797 * 298.39498 * 10 3 2 12 12 O 1.42107 * 106.39862 * 158.97150 * 11 10 3 13 13 O 1.42101 * 106.40225 * 26.05302 * 11 10 3 14 14 N 1.65597 * 107.21842 * 272.50923 * 11 10 3 15 15 C 1.46504 * 119.99681 * 84.25940 * 14 11 10 16 16 C 1.50705 * 109.46494 * 264.99345 * 15 14 11 17 17 H 1.08000 * 120.00440 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99876 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99847 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00237 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47310 * 59.99756 * 20 18 16 22 22 H 1.48498 * 109.47030 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46510 * 299.99763 * 20 18 16 24 24 C 1.46497 * 120.00034 * 264.25243 * 14 11 10 25 25 C 1.52998 * 109.47045 * 262.43837 * 24 14 11 26 26 O 1.42901 * 109.47425 * 65.42724 * 25 24 14 27 27 C 1.42893 * 114.00746 * 175.09060 * 26 25 24 28 28 H 1.09000 * 109.46994 * 305.25950 * 1 2 3 29 29 H 1.08999 * 109.47348 * 65.26459 * 1 2 3 30 30 H 1.09006 * 109.46888 * 185.26481 * 1 2 3 31 31 H 1.09003 * 109.47247 * 240.00349 * 2 1 3 32 32 H 1.08999 * 109.47531 * 120.00169 * 2 1 3 33 33 H 1.09007 * 110.85042 * 100.20254 * 5 3 2 34 34 H 1.08999 * 110.52112 * 336.97473 * 5 3 2 35 35 H 1.08997 * 109.46862 * 306.35418 * 8 6 5 36 36 H 1.09002 * 109.46735 * 66.35003 * 8 6 5 37 37 H 1.08997 * 109.47042 * 186.35103 * 8 6 5 38 38 H 1.09000 * 110.36917 * 204.14736 * 9 6 5 39 39 H 1.09004 * 110.36536 * 81.82686 * 9 6 5 40 40 H 1.08998 * 109.47629 * 24.99298 * 15 14 11 41 41 H 1.08997 * 109.47289 * 145.00164 * 15 14 11 42 42 H 0.96999 * 119.99932 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.47067 * 142.44140 * 24 14 11 44 44 H 1.08997 * 109.47125 * 22.43953 * 24 14 11 45 45 H 1.08998 * 109.47877 * 305.42077 * 25 24 14 46 46 H 1.09010 * 109.47101 * 185.42075 * 25 24 14 47 47 H 1.09004 * 109.46840 * 300.00008 * 27 26 25 48 48 H 1.09005 * 109.46714 * 59.99409 * 27 26 25 49 49 H 1.08993 * 109.47444 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5934 1.9958 0.8263 5 6 1.6876 2.1267 -1.3377 6 6 2.9458 2.9852 -1.6334 7 1 2.9073 3.9328 -1.0961 8 6 3.1113 3.2161 -3.1368 9 6 4.0761 2.0803 -1.0828 10 7 3.5050 1.4549 0.1239 11 16 4.3704 0.8588 1.4037 12 8 5.6856 0.6191 0.9218 13 8 3.5646 -0.1495 1.9981 14 7 4.4959 2.0757 2.5199 15 6 3.4137 2.3025 3.4810 16 6 2.4892 3.3694 2.9536 17 1 2.6876 3.8319 1.9980 18 6 1.3900 3.7551 3.6911 19 7 1.1481 3.1916 4.8546 20 14 0.2435 5.0771 3.0373 21 1 -0.3310 4.6370 1.7406 22 1 -0.8527 5.3080 4.0121 23 1 1.0033 6.3376 2.8397 24 6 5.6892 2.9252 2.5463 25 6 6.6554 2.4142 3.6169 26 8 7.1324 1.1185 3.2487 27 6 8.1295 0.5946 4.1281 28 1 -0.3633 0.5933 0.8391 29 1 -0.3634 0.4300 -0.9333 30 1 -0.3633 -1.0234 0.0943 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 0.8061 2.7589 -1.2298 34 1 1.5363 1.3823 -2.1194 35 1 3.1032 2.2570 -3.6547 36 1 2.2903 3.8331 -3.5021 37 1 4.0580 3.7225 -3.3245 38 1 4.9489 2.6792 -0.8229 39 1 4.3425 1.3181 -1.8152 40 1 2.8559 1.3772 3.6252 41 1 3.8350 2.6251 4.4331 42 1 0.3749 3.4632 5.3737 43 1 5.4002 3.9505 2.7773 44 1 6.1776 2.8960 1.5723 45 1 6.1376 2.3523 4.5740 46 1 7.4979 3.1005 3.7033 47 1 8.9906 1.2628 4.1402 48 1 7.7192 0.5123 5.1346 49 1 8.4389 -0.3910 3.7805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330381361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:45 Heat of formation + Delta-G solvation = -151.636467 kcal Electronic energy + Delta-G solvation = -30230.416968 eV Core-core repulsion = 26318.257646 eV Total energy + Delta-G solvation = -3912.159322 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.98527 -39.08602 -38.20918 -37.02373 -36.76017 -34.62196 -34.52098 -33.04352 -31.00538 -29.12649 -28.46626 -27.05267 -26.91954 -24.85039 -24.40887 -23.03380 -21.74629 -21.23962 -19.76453 -18.75294 -18.56384 -18.19057 -17.61465 -17.15448 -16.72692 -16.51935 -16.10947 -15.81712 -15.59275 -15.20172 -14.95988 -14.59506 -14.47658 -14.29250 -13.99472 -13.85508 -13.61994 -13.50039 -13.29585 -13.17974 -13.07937 -12.95511 -12.89887 -12.76257 -12.62593 -12.58285 -12.51844 -12.30950 -12.14578 -12.09416 -11.90770 -11.73483 -11.72178 -11.52962 -11.41597 -11.09745 -10.57630 -10.54890 -9.90767 -9.69505 -8.14059 -6.27498 -0.23613 1.44371 1.45599 1.53121 2.06719 2.44411 2.66366 2.96056 3.17381 3.34034 3.65696 3.85146 3.96521 4.06748 4.17198 4.19605 4.23687 4.36546 4.46392 4.51997 4.53928 4.56049 4.59184 4.62836 4.69182 4.74836 4.81173 4.87643 4.90300 4.91425 4.97412 5.02529 5.12898 5.17926 5.22856 5.25844 5.29203 5.40577 5.44097 5.52239 5.52589 5.60782 5.66919 5.78169 6.00363 6.12878 6.32336 6.84032 7.42156 8.93844 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008677 B = 0.006865 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.015373 B = 4077.841851 C = 5686.733499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.157 4.157 3 C 0.144 3.856 4 H 0.060 0.940 5 C -0.109 4.109 6 C -0.099 4.099 7 H 0.077 0.923 8 C -0.132 4.132 9 C 0.121 3.879 10 N -1.013 6.013 11 S 2.807 3.193 12 O -0.989 6.989 13 O -1.015 7.015 14 N -0.992 5.992 15 C 0.266 3.734 16 C -0.532 4.532 17 H 0.072 0.928 18 C 0.014 3.986 19 N -0.929 5.929 20 Si 0.953 3.047 21 H -0.261 1.261 22 H -0.291 1.291 23 H -0.266 1.266 24 C 0.127 3.873 25 C 0.039 3.961 26 O -0.412 6.412 27 C 0.023 3.977 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.009 0.991 41 H 0.017 0.983 42 H 0.264 0.736 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.089 0.911 47 H 0.063 0.937 48 H 0.040 0.960 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 1.340 -12.878 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.196 4.196 3 C 0.038 3.962 4 H 0.078 0.922 5 C -0.148 4.148 6 C -0.119 4.119 7 H 0.095 0.905 8 C -0.190 4.190 9 C -0.004 4.004 10 N -0.853 5.853 11 S 2.818 3.182 12 O -0.973 6.973 13 O -0.999 6.999 14 N -0.832 5.832 15 C 0.142 3.858 16 C -0.571 4.571 17 H 0.090 0.910 18 C -0.186 4.186 19 N -0.569 5.569 20 Si 0.778 3.222 21 H -0.185 1.185 22 H -0.217 1.217 23 H -0.191 1.191 24 C 0.002 3.998 25 C -0.039 4.039 26 O -0.331 6.331 27 C -0.073 4.073 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.027 0.973 41 H 0.035 0.965 42 H 0.073 0.927 43 H 0.121 0.879 44 H 0.106 0.894 45 H 0.060 0.940 46 H 0.107 0.893 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.088 0.321 -12.708 14.095 hybrid contribution -0.721 0.838 1.036 1.515 sum 5.368 1.159 -11.673 12.900 Atomic orbital electron populations 1.21654 0.93840 1.02053 1.02253 1.22264 0.97902 0.96653 1.02778 1.21521 0.78535 0.96177 1.00002 0.92166 1.22765 0.98346 0.98964 0.94713 1.22376 0.93523 0.97866 0.98127 0.90481 1.21661 1.02687 1.02555 0.92090 1.22215 0.96749 0.95811 0.85585 1.58964 1.16449 1.77065 1.32841 1.00904 0.71749 0.73423 0.72128 1.93533 1.37756 1.84925 1.81085 1.93463 1.71328 1.57486 1.77663 1.57635 1.26276 1.51356 1.47936 1.18654 0.83650 0.95687 0.87800 1.21716 1.08955 1.20931 1.05503 0.91011 1.25779 0.99206 0.98673 0.94924 1.70076 1.29233 1.43850 1.13764 0.85674 0.78332 0.79653 0.78531 1.18547 1.21659 1.19112 1.21357 0.83405 0.95353 0.99723 1.23141 0.97522 0.85139 0.98063 1.88007 1.58527 1.33991 1.52612 1.22920 0.90883 1.00017 0.93457 0.94213 0.90336 0.91913 0.90705 0.92382 0.89867 0.88797 0.91633 0.91276 0.91581 0.91013 0.90606 0.97328 0.96465 0.92710 0.87851 0.89380 0.94005 0.89313 0.91868 0.94086 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 9.68 71.98 0.70 -3.36 16 2 C -0.16 -5.36 5.40 30.60 0.17 -5.20 16 3 C 0.14 4.98 3.12 45.34 0.14 5.12 16 4 H 0.06 2.52 7.19 -2.38 -0.02 2.51 16 5 C -0.11 -2.71 5.19 31.79 0.17 -2.55 16 6 C -0.10 -2.27 3.64 -9.40 -0.03 -2.31 16 7 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 8 C -0.13 -2.10 9.29 71.98 0.67 -1.43 16 9 C 0.12 3.35 6.43 86.86 0.56 3.91 16 10 N -1.01 -36.58 3.46 -484.24 -1.67 -38.26 16 11 S 2.81 122.59 6.29 -56.49 -0.36 122.24 16 12 O -0.99 -43.66 15.23 -122.14 -1.86 -45.52 16 13 O -1.01 -51.68 13.88 -128.00 -1.78 -53.46 16 14 N -0.99 -43.19 2.78 -519.84 -1.45 -44.63 16 15 C 0.27 13.72 5.44 85.63 0.47 14.18 16 16 C -0.53 -27.45 8.45 25.60 0.22 -27.23 16 17 H 0.07 3.51 7.81 -2.91 -0.02 3.48 16 18 C 0.01 0.72 5.46 84.65 0.46 1.18 16 19 N -0.93 -53.76 13.29 21.45 0.28 -53.47 16 20 Si 0.95 41.20 29.54 68.60 2.03 43.23 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 24 C 0.13 4.52 5.81 86.38 0.50 5.02 16 25 C 0.04 1.30 6.26 71.98 0.45 1.75 16 26 O -0.41 -15.11 9.46 -136.90 -1.30 -16.41 16 27 C 0.02 0.63 11.01 113.37 1.25 1.88 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.79 7.65 -2.39 -0.02 1.77 16 30 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.07 2.21 8.02 -2.39 -0.02 2.19 16 32 H 0.06 2.46 5.49 -2.39 -0.01 2.44 16 33 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.09 1.92 7.63 -2.39 -0.02 1.90 16 35 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.08 1.87 8.04 -2.38 -0.02 1.85 16 40 H 0.01 0.51 7.00 -2.39 -0.02 0.50 16 41 H 0.02 0.93 7.82 -2.39 -0.02 0.92 16 42 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.10 3.40 8.13 -2.38 -0.02 3.38 16 44 H 0.09 2.86 7.36 -2.39 -0.02 2.84 16 45 H 0.04 1.47 7.85 -2.39 -0.02 1.46 16 46 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 47 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 48 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 49 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -70.87 396.39 0.51 -70.37 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.90 Total: 24.94 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 5.71 Total: -9.02 kcal Atomic # 7 Polarization: -133.53 SS G_CDS: -2.83 Total: -136.36 kcal Atomic # 8 Polarization: -110.45 SS G_CDS: -4.93 Total: -115.39 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 16 Polarization: 122.59 SS G_CDS: -0.36 Total: 122.24 kcal Total: -70.87 0.51 -70.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330381361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.271 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds