Wall clock time and date at job start Tue Mar 31 2020 17:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46927 * 2 1 4 4 H 1.08990 * 109.87356 * 304.42925 * 3 2 1 5 5 C 1.54325 * 109.88240 * 65.61117 * 3 2 1 6 6 C 1.55154 * 102.94558 * 141.60897 * 5 3 2 7 7 H 1.08994 * 111.00407 * 206.42241 * 6 5 3 8 8 C 1.52999 * 111.00563 * 82.60346 * 6 5 3 9 9 C 1.55135 * 101.48318 * 324.32999 * 6 5 3 10 10 N 1.47022 * 109.87897 * 183.41594 * 3 2 1 11 11 S 1.65598 * 125.65181 * 61.60541 * 10 3 2 12 12 O 1.42104 * 106.40226 * 342.19071 * 11 10 3 13 13 O 1.42104 * 106.40358 * 209.26742 * 11 10 3 14 14 N 1.65599 * 107.21847 * 95.72807 * 11 10 3 15 15 C 1.46505 * 119.99826 * 89.99900 * 14 11 10 16 16 C 1.50708 * 109.46852 * 95.00447 * 15 14 11 17 17 H 1.07999 * 119.99969 * 359.97438 * 16 15 14 18 18 C 1.37869 * 119.99955 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00015 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99949 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47260 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47340 * 119.99816 * 20 18 16 23 23 H 1.48505 * 109.46969 * 239.99178 * 20 18 16 24 24 C 1.46500 * 120.00166 * 270.00252 * 14 11 10 25 25 C 1.53000 * 109.47045 * 264.99883 * 24 14 11 26 26 O 1.42897 * 109.46869 * 65.00169 * 25 24 14 27 27 C 1.42904 * 113.99725 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.47096 * 174.95831 * 1 2 3 29 29 H 1.09005 * 109.47104 * 294.95759 * 1 2 3 30 30 H 1.08999 * 109.47172 * 54.95366 * 1 2 3 31 31 H 1.09001 * 109.47156 * 240.00197 * 2 1 3 32 32 H 1.08999 * 109.47130 * 119.99967 * 2 1 3 33 33 H 1.09004 * 110.71384 * 259.96801 * 5 3 2 34 34 H 1.08998 * 110.72185 * 23.06242 * 5 3 2 35 35 H 1.09003 * 109.46872 * 60.00243 * 8 6 5 36 36 H 1.09000 * 109.47100 * 180.02562 * 8 6 5 37 37 H 1.09006 * 109.47504 * 300.00308 * 8 6 5 38 38 H 1.09003 * 110.49476 * 278.45284 * 9 6 5 39 39 H 1.08998 * 110.33956 * 156.05964 * 9 6 5 40 40 H 1.08998 * 109.47620 * 335.00374 * 15 14 11 41 41 H 1.09004 * 109.47088 * 214.99683 * 15 14 11 42 42 H 0.96998 * 119.99716 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.47184 * 25.00137 * 24 14 11 44 44 H 1.09003 * 109.47189 * 144.99954 * 24 14 11 45 45 H 1.08998 * 109.46891 * 184.99730 * 25 24 14 46 46 H 1.08997 * 109.47164 * 304.99777 * 25 24 14 47 47 H 1.09000 * 109.47494 * 300.00263 * 27 26 25 48 48 H 1.09010 * 109.46740 * 59.99971 * 27 26 25 49 49 H 1.09001 * 109.47198 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6171 1.9850 -0.8454 5 6 1.6499 2.1371 1.3218 6 6 2.8968 3.0038 1.6401 7 1 2.9855 3.1820 2.7117 8 6 2.8581 4.3246 0.8688 9 6 4.0447 2.0913 1.1338 10 7 3.5078 1.4539 -0.0824 11 16 4.4092 0.8451 -1.3310 12 8 3.5532 -0.0277 -2.0556 13 8 5.6461 0.4300 -0.7680 14 7 4.7572 2.1071 -2.3452 15 6 5.9735 2.8976 -2.1402 16 6 7.0756 2.3600 -3.0163 17 1 6.8888 1.5139 -3.6610 18 6 8.3226 2.9477 -2.9941 19 7 8.5502 3.9777 -2.2087 20 14 9.6889 2.2809 -4.0795 21 1 9.1802 1.1262 -4.8624 22 1 10.1477 3.3453 -5.0078 23 1 10.8252 1.8409 -3.2306 24 6 3.8488 2.4330 -3.4474 25 6 4.3334 1.7485 -4.7271 26 8 4.2454 0.3308 -4.5714 27 6 4.6761 -0.4074 -5.7168 28 1 -0.3633 -1.0237 -0.0903 29 1 -0.3633 0.4336 0.9317 30 1 -0.3633 0.5901 -0.8413 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.7695 2.7646 1.1824 34 1 1.4771 1.4017 2.1075 35 1 1.9642 4.8824 1.1482 36 1 3.7438 4.9123 1.1101 37 1 2.8388 4.1199 -0.2016 38 1 4.2900 1.3365 1.8810 39 1 4.9245 2.6877 0.8927 40 1 6.2764 2.8340 -1.0951 41 1 5.7784 3.9383 -2.3993 42 1 9.4274 4.3914 -2.1933 43 1 2.8448 2.0837 -3.2062 44 1 3.8317 3.5126 -3.5970 45 1 3.7101 2.0614 -5.5648 46 1 5.3687 2.0295 -4.9197 47 1 4.0597 -0.1392 -6.5748 48 1 5.7186 -0.1712 -5.9303 49 1 4.5789 -1.4749 -5.5186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330381362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:48 Heat of formation + Delta-G solvation = -126.070040 kcal Electronic energy + Delta-G solvation = -30216.428225 eV Core-core repulsion = 26305.377546 eV Total energy + Delta-G solvation = -3911.050679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.07531 -37.53540 -36.39329 -35.28128 -34.91322 -33.57351 -32.48502 -31.71739 -29.29397 -28.05452 -26.74896 -26.32135 -25.62388 -23.40530 -22.64675 -21.61580 -20.95947 -19.97965 -18.29523 -17.12745 -16.89852 -16.36637 -16.00570 -15.51554 -15.11309 -14.92122 -14.56294 -14.49496 -14.31330 -14.01613 -13.56467 -13.45357 -13.19684 -12.80468 -12.62195 -12.56576 -12.34514 -12.01366 -11.94979 -11.76079 -11.61851 -11.58382 -11.39036 -11.21626 -11.11787 -11.04594 -11.00097 -10.77235 -10.73814 -10.64570 -10.60954 -10.53621 -10.38803 -10.13107 -9.93172 -9.62056 -8.98830 -8.67609 -8.41182 -8.00639 -6.04650 -4.06960 1.34865 3.30050 3.38490 3.42906 3.66597 4.22161 4.39033 4.45430 4.54126 4.69311 4.89806 5.11763 5.15744 5.28585 5.30387 5.33223 5.49360 5.51948 5.57461 5.60136 5.61018 5.68144 5.72382 5.73574 5.81038 5.88585 5.89491 6.02098 6.03811 6.05324 6.07081 6.09737 6.11154 6.14204 6.27715 6.35623 6.41495 6.53744 6.60944 6.66707 6.81697 7.25588 7.45495 7.65325 7.80558 7.94550 8.24718 8.96206 9.57581 11.04096 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.005283 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.542598 B = 5298.474931 C = 6551.255408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.159 4.159 3 C 0.159 3.841 4 H 0.068 0.932 5 C -0.119 4.119 6 C -0.103 4.103 7 H 0.083 0.917 8 C -0.142 4.142 9 C 0.125 3.875 10 N -1.020 6.020 11 S 2.790 3.210 12 O -0.966 6.966 13 O -0.967 6.967 14 N -0.988 5.988 15 C 0.258 3.742 16 C -0.521 4.521 17 H 0.063 0.937 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.282 1.282 24 C 0.144 3.856 25 C 0.034 3.966 26 O -0.368 6.368 27 C 0.033 3.967 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.035 0.965 41 H 0.033 0.967 42 H 0.262 0.738 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.076 0.924 47 H 0.031 0.969 48 H 0.038 0.962 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.815 -0.963 3.794 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.198 4.198 3 C 0.052 3.948 4 H 0.086 0.914 5 C -0.157 4.157 6 C -0.123 4.123 7 H 0.102 0.898 8 C -0.200 4.200 9 C 0.000 4.000 10 N -0.858 5.858 11 S 2.800 3.200 12 O -0.950 6.950 13 O -0.950 6.950 14 N -0.829 5.829 15 C 0.135 3.865 16 C -0.561 4.561 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.208 1.208 24 C 0.017 3.983 25 C -0.045 4.045 26 O -0.286 6.286 27 C -0.064 4.064 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.059 0.941 46 H 0.094 0.906 47 H 0.050 0.950 48 H 0.056 0.944 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.393 -1.850 3.839 15.972 hybrid contribution 0.996 0.244 -0.866 1.342 sum -14.398 -1.606 2.974 14.789 Atomic orbital electron populations 1.21673 0.95444 1.01594 1.01420 1.22307 0.96239 0.96946 1.04323 1.21217 0.79814 0.95730 0.98044 0.91390 1.22769 0.97743 0.98537 0.96689 1.22381 0.94780 0.95109 0.99999 0.89833 1.21733 1.01556 0.95723 1.00952 1.22018 0.96515 0.94915 0.86579 1.59584 1.15385 1.76881 1.33964 1.01820 0.72589 0.73516 0.72051 1.93542 1.68092 1.62279 1.71108 1.93607 1.42916 1.79872 1.78649 1.57803 1.32326 1.52897 1.39904 1.19036 0.79350 0.90802 0.97262 1.21576 0.95317 1.15285 1.23880 0.91883 1.24918 0.98384 0.94956 0.95759 1.69924 1.22850 1.22336 1.38457 0.86534 0.82205 0.78862 0.80400 1.19743 1.21061 1.20817 1.20992 0.91816 0.99317 0.86169 1.23181 1.02074 0.81874 0.97354 1.88090 1.86290 1.17116 1.37107 1.22650 0.98181 0.96844 0.88749 0.92775 0.92994 0.92683 0.88591 0.91954 0.90645 0.90793 0.92833 0.92194 0.92084 0.91819 0.90416 0.94719 0.94948 0.92856 0.91322 0.89759 0.94082 0.90628 0.95009 0.94384 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.66 37.16 0.36 -1.09 16 2 C -0.16 -2.09 5.39 -26.73 -0.14 -2.23 16 3 C 0.16 2.08 2.76 -66.95 -0.18 1.89 16 4 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.12 -1.21 5.12 -24.90 -0.13 -1.34 16 6 C -0.10 -1.14 3.71 -88.35 -0.33 -1.47 16 7 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 8 C -0.14 -1.59 9.22 37.16 0.34 -1.24 16 9 C 0.13 1.84 6.52 -2.40 -0.02 1.82 16 10 N -1.02 -16.59 3.44 -104.28 -0.36 -16.95 16 11 S 2.79 58.49 6.15 -107.50 -0.66 57.82 16 12 O -0.97 -20.64 12.45 -65.29 -0.81 -21.45 16 13 O -0.97 -24.55 16.77 -57.17 -0.96 -25.50 16 14 N -0.99 -20.69 2.80 -115.65 -0.32 -21.01 16 15 C 0.26 6.36 5.12 -5.19 -0.03 6.33 16 16 C -0.52 -14.41 8.38 -34.44 -0.29 -14.70 16 17 H 0.06 1.78 6.77 -52.49 -0.36 1.42 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.90 -25.88 13.29 55.43 0.74 -25.14 16 20 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.14 2.53 5.84 -4.04 -0.02 2.50 16 25 C 0.03 0.61 6.02 37.16 0.22 0.83 16 26 O -0.37 -7.35 8.76 -54.45 -0.48 -7.83 16 27 C 0.03 0.53 11.01 101.05 1.11 1.65 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.44 7.58 -51.93 -0.39 0.05 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.10 1.53 5.69 -51.93 -0.30 1.24 16 32 H 0.06 0.79 8.06 -51.93 -0.42 0.38 16 33 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 34 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.76 7.91 -51.93 -0.41 0.35 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 40 H 0.03 0.92 7.61 -51.93 -0.40 0.53 16 41 H 0.03 0.80 8.00 -51.93 -0.42 0.39 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.07 1.08 7.61 -51.93 -0.40 0.69 16 44 H 0.08 1.30 8.00 -51.93 -0.42 0.88 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 1.54 6.25 -51.93 -0.32 1.21 16 47 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 49 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 393.98 15.07 5.94 5.94 Total: -1.00 -33.56 393.98 -9.98 -43.54 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.85 Total: -0.82 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 0.80 Total: -5.41 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: 0.05 Total: -63.11 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -2.25 Total: -54.78 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 58.49 SS G_CDS: -0.66 Total: 57.82 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.56 -9.98 -43.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330381362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.528 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds