Wall clock time and date at job start Tue Mar 31 2020 17:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46927 * 2 1 4 4 H 1.08990 * 109.87356 * 304.42925 * 3 2 1 5 5 C 1.54325 * 109.88240 * 65.61117 * 3 2 1 6 6 C 1.55154 * 102.94558 * 141.60897 * 5 3 2 7 7 H 1.08994 * 111.00407 * 206.42241 * 6 5 3 8 8 C 1.52999 * 111.00563 * 82.60346 * 6 5 3 9 9 C 1.55135 * 101.48318 * 324.32999 * 6 5 3 10 10 N 1.47022 * 109.87897 * 183.41594 * 3 2 1 11 11 S 1.65598 * 125.65181 * 61.60541 * 10 3 2 12 12 O 1.42104 * 106.40226 * 342.19071 * 11 10 3 13 13 O 1.42104 * 106.40358 * 209.26742 * 11 10 3 14 14 N 1.65599 * 107.21847 * 95.72807 * 11 10 3 15 15 C 1.46505 * 119.99826 * 89.99900 * 14 11 10 16 16 C 1.50708 * 109.46852 * 95.00447 * 15 14 11 17 17 H 1.07999 * 119.99969 * 359.97438 * 16 15 14 18 18 C 1.37869 * 119.99955 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00015 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99949 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47260 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47340 * 119.99816 * 20 18 16 23 23 H 1.48505 * 109.46969 * 239.99178 * 20 18 16 24 24 C 1.46500 * 120.00166 * 270.00252 * 14 11 10 25 25 C 1.53000 * 109.47045 * 264.99883 * 24 14 11 26 26 O 1.42897 * 109.46869 * 65.00169 * 25 24 14 27 27 C 1.42904 * 113.99725 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.47096 * 174.95831 * 1 2 3 29 29 H 1.09005 * 109.47104 * 294.95759 * 1 2 3 30 30 H 1.08999 * 109.47172 * 54.95366 * 1 2 3 31 31 H 1.09001 * 109.47156 * 240.00197 * 2 1 3 32 32 H 1.08999 * 109.47130 * 119.99967 * 2 1 3 33 33 H 1.09004 * 110.71384 * 259.96801 * 5 3 2 34 34 H 1.08998 * 110.72185 * 23.06242 * 5 3 2 35 35 H 1.09003 * 109.46872 * 60.00243 * 8 6 5 36 36 H 1.09000 * 109.47100 * 180.02562 * 8 6 5 37 37 H 1.09006 * 109.47504 * 300.00308 * 8 6 5 38 38 H 1.09003 * 110.49476 * 278.45284 * 9 6 5 39 39 H 1.08998 * 110.33956 * 156.05964 * 9 6 5 40 40 H 1.08998 * 109.47620 * 335.00374 * 15 14 11 41 41 H 1.09004 * 109.47088 * 214.99683 * 15 14 11 42 42 H 0.96998 * 119.99716 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.47184 * 25.00137 * 24 14 11 44 44 H 1.09003 * 109.47189 * 144.99954 * 24 14 11 45 45 H 1.08998 * 109.46891 * 184.99730 * 25 24 14 46 46 H 1.08997 * 109.47164 * 304.99777 * 25 24 14 47 47 H 1.09000 * 109.47494 * 300.00263 * 27 26 25 48 48 H 1.09010 * 109.46740 * 59.99971 * 27 26 25 49 49 H 1.09001 * 109.47198 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6171 1.9850 -0.8454 5 6 1.6499 2.1371 1.3218 6 6 2.8968 3.0038 1.6401 7 1 2.9855 3.1820 2.7117 8 6 2.8581 4.3246 0.8688 9 6 4.0447 2.0913 1.1338 10 7 3.5078 1.4539 -0.0824 11 16 4.4092 0.8451 -1.3310 12 8 3.5532 -0.0277 -2.0556 13 8 5.6461 0.4300 -0.7680 14 7 4.7572 2.1071 -2.3452 15 6 5.9735 2.8976 -2.1402 16 6 7.0756 2.3600 -3.0163 17 1 6.8888 1.5139 -3.6610 18 6 8.3226 2.9477 -2.9941 19 7 8.5502 3.9777 -2.2087 20 14 9.6889 2.2809 -4.0795 21 1 9.1802 1.1262 -4.8624 22 1 10.1477 3.3453 -5.0078 23 1 10.8252 1.8409 -3.2306 24 6 3.8488 2.4330 -3.4474 25 6 4.3334 1.7485 -4.7271 26 8 4.2454 0.3308 -4.5714 27 6 4.6761 -0.4074 -5.7168 28 1 -0.3633 -1.0237 -0.0903 29 1 -0.3633 0.4336 0.9317 30 1 -0.3633 0.5901 -0.8413 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.7695 2.7646 1.1824 34 1 1.4771 1.4017 2.1075 35 1 1.9642 4.8824 1.1482 36 1 3.7438 4.9123 1.1101 37 1 2.8388 4.1199 -0.2016 38 1 4.2900 1.3365 1.8810 39 1 4.9245 2.6877 0.8927 40 1 6.2764 2.8340 -1.0951 41 1 5.7784 3.9383 -2.3993 42 1 9.4274 4.3914 -2.1933 43 1 2.8448 2.0837 -3.2062 44 1 3.8317 3.5126 -3.5970 45 1 3.7101 2.0614 -5.5648 46 1 5.3687 2.0295 -4.9197 47 1 4.0597 -0.1392 -6.5748 48 1 5.7186 -0.1712 -5.9303 49 1 4.5789 -1.4749 -5.5186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330381362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:48 Heat of formation + Delta-G solvation = -148.696585 kcal Electronic energy + Delta-G solvation = -30217.409386 eV Core-core repulsion = 26305.377546 eV Total energy + Delta-G solvation = -3912.031840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.13290 -39.01683 -38.14146 -36.96548 -36.68024 -34.58663 -34.51040 -32.84218 -30.92133 -28.96871 -28.61700 -27.35458 -27.03042 -24.64427 -24.35749 -23.15230 -22.07481 -20.95192 -19.77018 -18.84951 -18.52580 -18.19769 -17.52299 -16.82412 -16.62029 -16.34527 -16.28247 -15.85900 -15.48106 -15.30960 -14.89696 -14.72202 -14.46746 -14.34375 -14.06200 -13.74857 -13.64081 -13.48459 -13.37478 -13.04494 -12.96792 -12.96211 -12.87393 -12.85162 -12.71890 -12.53239 -12.52422 -12.31492 -12.15214 -12.11449 -11.79637 -11.71467 -11.63912 -11.54867 -11.48268 -11.12502 -10.60768 -10.42011 -9.95602 -9.72837 -8.19440 -6.28575 -0.26426 1.33773 1.37509 1.47825 2.14327 2.39100 2.71096 3.03868 3.11412 3.35620 3.62217 3.83073 3.95712 4.07765 4.16108 4.27864 4.29087 4.35448 4.38066 4.53706 4.54821 4.57174 4.61238 4.63863 4.70588 4.77051 4.80305 4.83381 4.90966 4.97919 5.00208 5.07854 5.11746 5.18979 5.21520 5.23450 5.28608 5.32028 5.43785 5.46378 5.55309 5.58261 5.65742 5.73887 6.01312 6.14593 6.41007 6.79360 7.38916 8.88463 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.005283 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.542598 B = 5298.474931 C = 6551.255408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.161 4.161 3 C 0.148 3.852 4 H 0.074 0.926 5 C -0.107 4.107 6 C -0.092 4.092 7 H 0.110 0.890 8 C -0.142 4.142 9 C 0.113 3.887 10 N -1.017 6.017 11 S 2.800 3.200 12 O -0.974 6.974 13 O -1.022 7.022 14 N -0.992 5.992 15 C 0.276 3.724 16 C -0.533 4.533 17 H 0.051 0.949 18 C 0.014 3.986 19 N -0.923 5.923 20 Si 0.947 3.053 21 H -0.273 1.273 22 H -0.268 1.268 23 H -0.282 1.282 24 C 0.135 3.865 25 C 0.032 3.968 26 O -0.399 6.399 27 C 0.026 3.974 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.042 0.958 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.008 0.992 41 H 0.030 0.970 42 H 0.266 0.734 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.028 0.972 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.310 -0.313 3.979 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.200 4.200 3 C 0.043 3.957 4 H 0.092 0.908 5 C -0.145 4.145 6 C -0.112 4.112 7 H 0.128 0.872 8 C -0.200 4.200 9 C -0.012 4.012 10 N -0.858 5.858 11 S 2.811 3.189 12 O -0.958 6.958 13 O -1.006 7.006 14 N -0.832 5.832 15 C 0.153 3.847 16 C -0.573 4.573 17 H 0.069 0.931 18 C -0.185 4.185 19 N -0.564 5.564 20 Si 0.773 3.227 21 H -0.198 1.198 22 H -0.193 1.193 23 H -0.208 1.208 24 C 0.009 3.991 25 C -0.046 4.046 26 O -0.318 6.318 27 C -0.070 4.070 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.124 0.876 45 H 0.097 0.903 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.046 0.954 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.905 -1.208 3.994 18.384 hybrid contribution 1.703 0.013 -0.907 1.930 sum -16.202 -1.194 3.087 16.536 Atomic orbital electron populations 1.21645 0.92760 1.02234 1.02900 1.22288 0.98582 0.96497 1.02619 1.21589 0.77399 0.96352 1.00378 0.90758 1.22792 0.98028 0.98689 0.95008 1.22386 0.93315 0.94233 1.01260 0.87185 1.21743 1.02404 0.95946 0.99860 1.22249 0.97414 0.95564 0.85979 1.59185 1.16937 1.76569 1.33070 1.01177 0.71849 0.73564 0.72310 1.93528 1.67691 1.62808 1.71778 1.93527 1.46130 1.81245 1.79699 1.57665 1.31884 1.52130 1.41494 1.18573 0.80286 0.90852 0.95024 1.21823 0.96573 1.14897 1.23992 0.93105 1.25654 1.00514 0.95301 0.97046 1.70007 1.23556 1.23235 1.39572 0.85670 0.79380 0.78622 0.79032 1.19759 1.19297 1.20782 1.21329 0.91894 1.00810 0.85022 1.23224 1.01181 0.81369 0.98865 1.88043 1.86514 1.18085 1.39165 1.22832 0.98200 0.97072 0.88921 0.92486 0.90606 0.92228 0.92012 0.92015 0.87695 0.89256 0.90070 0.93294 0.93849 0.91452 0.93078 0.97452 0.95189 0.92527 0.89245 0.87586 0.90255 0.93512 0.91884 0.95380 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.66 71.98 0.70 -1.70 16 2 C -0.16 -4.00 5.39 30.59 0.17 -3.83 16 3 C 0.15 3.62 2.76 45.34 0.12 3.75 16 4 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 5 C -0.11 -1.78 5.12 31.78 0.16 -1.62 16 6 C -0.09 -1.82 3.71 -9.32 -0.03 -1.85 16 7 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 8 C -0.14 -2.88 9.22 71.98 0.66 -2.22 16 9 C 0.11 3.34 6.52 86.93 0.57 3.91 16 10 N -1.02 -33.28 3.44 -483.85 -1.66 -34.94 16 11 S 2.80 121.56 6.15 -56.49 -0.35 121.21 16 12 O -0.97 -42.57 12.45 -120.24 -1.50 -44.06 16 13 O -1.02 -54.87 16.77 -128.00 -2.15 -57.02 16 14 N -0.99 -42.66 2.80 -519.81 -1.46 -44.11 16 15 C 0.28 14.21 5.12 85.63 0.44 14.65 16 16 C -0.53 -30.49 8.38 25.60 0.21 -30.28 16 17 H 0.05 2.98 6.77 -2.91 -0.02 2.96 16 18 C 0.01 0.80 5.46 84.65 0.46 1.26 16 19 N -0.92 -54.42 13.29 21.44 0.28 -54.14 16 20 Si 0.95 45.41 29.54 68.60 2.03 47.44 16 21 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 24 C 0.14 4.68 5.84 86.38 0.50 5.18 16 25 C 0.03 1.14 6.02 71.98 0.43 1.57 16 26 O -0.40 -15.93 8.76 -130.61 -1.14 -17.07 16 27 C 0.03 0.84 11.01 113.37 1.25 2.09 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.97 7.58 -2.38 -0.02 0.95 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.97 5.69 -2.39 -0.01 1.96 16 32 H 0.06 1.50 8.06 -2.39 -0.02 1.48 16 33 H 0.10 1.23 8.05 -2.38 -0.02 1.21 16 34 H 0.09 1.28 7.79 -2.39 -0.02 1.26 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.04 1.03 7.91 -2.38 -0.02 1.01 16 38 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.76 8.06 -2.39 -0.02 1.74 16 40 H 0.01 0.42 7.61 -2.39 -0.02 0.41 16 41 H 0.03 1.54 8.00 -2.38 -0.02 1.52 16 42 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 43 H 0.09 2.71 7.61 -2.39 -0.02 2.69 16 44 H 0.11 3.16 8.00 -2.39 -0.02 3.14 16 45 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.05 1.93 6.25 -2.39 -0.01 1.92 16 47 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -75.92 393.98 0.60 -75.32 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.90 Total: 16.48 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.65 Total: -9.10 kcal Atomic # 7 Polarization: -130.35 SS G_CDS: -2.84 Total: -133.19 kcal Atomic # 8 Polarization: -113.37 SS G_CDS: -4.79 Total: -118.16 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 121.56 SS G_CDS: -0.35 Total: 121.21 kcal Total: -75.92 0.60 -75.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330381362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.380 kcal (2) G-P(sol) polarization free energy of solvation -75.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds