Wall clock time and date at job start Tue Mar 31 2020 17:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 H 1.08993 * 109.47649 * 177.11914 * 3 2 1 5 5 N 1.46507 * 109.47106 * 57.11525 * 3 2 1 6 6 S 1.65599 * 119.99324 * 93.58717 * 5 3 2 7 7 O 1.42106 * 106.39644 * 177.02123 * 6 5 3 8 8 O 1.42097 * 106.40595 * 309.93768 * 6 5 3 9 9 N 1.65602 * 107.22011 * 63.48623 * 6 5 3 10 10 C 1.46491 * 120.00128 * 89.99457 * 9 6 5 11 11 C 1.46501 * 119.99573 * 269.99674 * 9 6 5 12 12 H 1.09000 * 109.47052 * 359.97438 * 11 9 6 13 13 C 1.52996 * 109.47326 * 120.00089 * 11 9 6 14 14 C 1.50702 * 109.46736 * 239.99887 * 11 9 6 15 15 H 1.07994 * 120.00465 * 359.97438 * 14 11 9 16 16 C 1.37882 * 119.99446 * 179.97438 * 14 11 9 17 17 N 1.31515 * 120.00351 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99757 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47054 * 60.00227 * 18 16 14 20 20 H 1.48499 * 109.47380 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47173 * 300.00207 * 18 16 14 22 22 C 1.53004 * 109.46726 * 297.12348 * 3 2 1 23 23 C 1.53180 * 109.54232 * 299.81412 * 22 3 2 24 24 C 1.53098 * 109.15690 * 183.24333 * 23 22 3 25 25 O 1.42902 * 109.49054 * 57.47992 * 24 23 22 26 26 C 1.42905 * 114.09490 * 298.89047 * 25 24 23 27 27 C 1.53089 * 109.41627 * 61.15364 * 26 25 24 28 28 H 1.09001 * 109.47159 * 296.13204 * 1 2 3 29 29 H 1.08995 * 109.46695 * 176.13617 * 1 2 3 30 30 H 1.09002 * 109.46846 * 56.13368 * 1 2 3 31 31 H 1.09004 * 109.47087 * 119.99396 * 2 1 3 32 32 H 1.09003 * 109.47193 * 239.99963 * 2 1 3 33 33 H 0.96996 * 120.00378 * 273.58573 * 5 3 2 34 34 H 1.09001 * 109.47137 * 90.00633 * 10 9 6 35 35 H 1.09000 * 109.47348 * 209.99752 * 10 9 6 36 36 H 1.08999 * 109.47448 * 330.00199 * 10 9 6 37 37 H 1.09004 * 109.47180 * 299.99923 * 13 11 9 38 38 H 1.08998 * 109.47281 * 59.99279 * 13 11 9 39 39 H 1.08996 * 109.47825 * 179.97438 * 13 11 9 40 40 H 0.96995 * 119.99979 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.54931 * 60.00028 * 22 3 2 42 42 H 1.09000 * 109.52632 * 303.06818 * 23 22 3 43 43 H 1.09003 * 109.51406 * 63.25425 * 23 22 3 44 44 H 1.09003 * 109.40693 * 297.49805 * 24 23 22 45 45 H 1.09001 * 109.48362 * 177.50657 * 24 23 22 46 46 H 1.08999 * 109.47869 * 301.17018 * 26 25 24 47 47 H 1.09002 * 109.48131 * 181.14092 * 26 25 24 48 48 H 1.09001 * 109.52231 * 182.48509 * 27 26 25 49 49 H 1.09004 * 109.57589 * 62.32910 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1287 1.4430 0.0516 5 7 1.4958 2.1529 1.1599 6 16 2.3650 2.2280 2.5674 7 8 1.6099 3.0326 3.4629 8 8 2.7621 0.8965 2.8654 9 7 3.7541 3.0686 2.2415 10 6 3.7837 4.5245 2.4006 11 6 4.9534 2.3561 1.7940 12 1 4.7413 1.2885 1.7358 13 6 5.3670 2.8704 0.4137 14 6 6.0733 2.5925 2.7744 15 1 5.9083 3.2119 3.6436 16 6 7.3085 2.0180 2.5616 17 7 7.5096 1.2642 1.5029 18 14 8.6968 2.3116 3.7764 19 1 8.2955 1.8134 5.1166 20 1 9.9121 1.5883 3.3236 21 1 8.9863 3.7660 3.8553 22 6 1.5900 2.1425 -1.2839 23 6 2.1618 1.4037 -2.4978 24 6 1.7740 2.1569 -3.7730 25 8 2.2552 3.5004 -3.6982 26 6 1.7161 4.2534 -2.6098 27 6 2.1035 3.5857 -1.2878 28 1 -0.3633 0.4526 0.9226 29 1 -0.3632 -1.0253 -0.0692 30 1 -0.3633 0.5727 -0.8533 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 0.6264 2.5793 1.1035 34 1 4.0886 4.7728 3.4172 35 1 4.4939 4.9530 1.6935 36 1 2.7906 4.9312 2.2096 37 1 4.5570 2.6994 -0.2954 38 1 5.5792 3.9379 0.4723 39 1 6.2595 2.3407 0.0809 40 1 8.3787 0.8604 1.3531 41 1 0.5013 2.1428 -1.3368 42 1 3.2480 1.3590 -2.4186 43 1 1.7563 0.3925 -2.5328 44 1 0.6886 2.1646 -3.8731 45 1 2.2154 1.6604 -4.6371 46 1 0.6300 4.2885 -2.6947 47 1 2.1159 5.2672 -2.6358 48 1 1.6564 4.1335 -0.4582 49 1 3.1884 3.5866 -1.1823 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330423243.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:12 Heat of formation + Delta-G solvation = -137.099150 kcal Electronic energy + Delta-G solvation = -30317.309162 eV Core-core repulsion = 26405.780225 eV Total energy + Delta-G solvation = -3911.528937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.79505 -37.26680 -36.53760 -36.16033 -35.18692 -32.69694 -32.57922 -31.86452 -30.77314 -29.12358 -26.67671 -25.60422 -25.16035 -24.16234 -23.40956 -21.20086 -20.69249 -19.74587 -18.71485 -17.34949 -16.81230 -16.47132 -16.22347 -16.03446 -15.72613 -15.15258 -14.84369 -14.60250 -14.39730 -14.09074 -13.62768 -13.49930 -13.41305 -13.17381 -12.82817 -12.64917 -12.32744 -12.00199 -11.77149 -11.74706 -11.61524 -11.52017 -11.45926 -11.36590 -11.26986 -11.19959 -11.02360 -10.86722 -10.80535 -10.55769 -10.50246 -10.32284 -10.31006 -10.15994 -10.01146 -9.59521 -9.27653 -9.12056 -8.44786 -7.97767 -6.07590 -4.13717 1.23460 3.30515 3.34900 3.38177 3.52026 3.83897 4.13755 4.40262 4.56070 4.66618 4.78696 4.96755 5.00535 5.09594 5.19504 5.24029 5.27521 5.31662 5.33584 5.41782 5.51654 5.59960 5.61866 5.64939 5.76248 5.80877 5.92238 6.01889 6.08152 6.09548 6.14508 6.15247 6.27361 6.36980 6.41775 6.52060 6.63195 6.78363 6.82634 6.98179 7.14605 7.19899 7.49740 7.62920 7.78800 8.03672 8.27458 8.88066 9.52080 10.97948 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.004888 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.264257 B = 5726.545139 C = 6586.998196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.159 3.841 4 H 0.096 0.904 5 N -1.127 6.127 6 S 2.778 3.222 7 O -1.000 7.000 8 O -0.973 6.973 9 N -0.990 5.990 10 C 0.112 3.888 11 C 0.268 3.732 12 H 0.058 0.942 13 C -0.152 4.152 14 C -0.520 4.520 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.890 5.890 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.090 4.090 23 C -0.154 4.154 24 C 0.064 3.936 25 O -0.384 6.384 26 C 0.063 3.937 27 C -0.157 4.157 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.406 0.594 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.034 0.966 39 H 0.093 0.907 40 H 0.263 0.737 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.045 0.955 45 H 0.092 0.908 46 H 0.045 0.955 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.395 2.412 -10.043 16.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.051 3.949 4 H 0.114 0.886 5 N -0.884 5.884 6 S 2.786 3.214 7 O -0.984 6.984 8 O -0.956 6.956 9 N -0.833 5.833 10 C -0.035 4.035 11 C 0.165 3.835 12 H 0.076 0.924 13 C -0.211 4.211 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.110 4.110 23 C -0.192 4.192 24 C -0.013 4.013 25 O -0.302 6.302 26 C -0.014 4.014 27 C -0.194 4.194 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.239 0.761 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.053 0.947 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.063 0.937 47 H 0.109 0.891 48 H 0.093 0.907 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.188 1.905 -9.387 16.299 hybrid contribution 0.368 0.391 0.524 0.751 sum -12.820 2.296 -8.863 15.753 Atomic orbital electron populations 1.21743 0.96045 1.01187 1.01557 1.22101 0.96360 0.96619 1.03513 1.20838 0.98957 0.90662 0.84395 0.88569 1.56254 1.32234 1.69118 1.30786 1.02014 0.72603 0.73755 0.72988 1.93542 1.72053 1.70832 1.62019 1.93597 1.82444 1.36876 1.82702 1.57674 1.26684 1.15737 1.83196 1.21109 1.00281 0.80286 1.01782 1.18728 0.80910 0.91662 0.92167 0.92426 1.22242 1.01435 1.00429 0.96970 1.21286 0.95193 1.31141 1.08337 0.92077 1.24890 0.98521 0.94822 0.95561 1.69834 1.23825 1.32337 1.26870 0.86571 0.81136 0.78270 0.81499 1.20210 1.21234 1.20269 1.21452 1.00435 0.95046 0.94065 1.22311 1.02919 0.99561 0.94426 1.22541 0.98046 0.82904 0.97834 1.87940 1.69322 1.23800 1.49162 1.22568 0.97323 0.95297 0.86182 1.22345 1.03710 0.95626 0.97751 0.92763 0.93077 0.92881 0.90130 0.90920 0.76138 0.93426 0.91003 0.93413 0.96553 0.94725 0.88881 0.92665 0.90607 0.90191 0.90350 0.93631 0.89032 0.93711 0.89056 0.90728 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.47 37.16 0.35 -1.20 16 2 C -0.15 -1.87 5.62 -26.73 -0.15 -2.02 16 3 C 0.16 2.11 2.09 -67.92 -0.14 1.97 16 4 H 0.10 1.53 5.25 -51.93 -0.27 1.26 16 5 N -1.13 -15.61 4.06 -4.89 -0.02 -15.63 16 6 S 2.78 52.72 5.99 -107.50 -0.64 52.08 16 7 O -1.00 -20.50 17.21 -57.17 -0.98 -21.48 16 8 O -0.97 -22.07 15.90 -57.17 -0.91 -22.98 16 9 N -0.99 -19.70 3.12 -115.86 -0.36 -20.06 16 10 C 0.11 1.94 9.53 59.84 0.57 2.51 16 11 C 0.27 6.26 1.87 -69.08 -0.13 6.14 16 12 H 0.06 1.50 6.79 -51.93 -0.35 1.15 16 13 C -0.15 -3.23 8.81 37.16 0.33 -2.90 16 14 C -0.52 -13.75 8.37 -34.44 -0.29 -14.04 16 15 H 0.06 1.62 7.65 -52.49 -0.40 1.22 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -24.26 11.32 55.43 0.63 -23.64 16 18 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.09 -0.96 1.67 -90.43 -0.15 -1.12 16 23 C -0.15 -1.58 4.98 -26.59 -0.13 -1.71 16 24 C 0.06 0.62 6.84 37.21 0.25 0.87 16 25 O -0.38 -4.64 10.77 -35.23 -0.38 -5.02 16 26 C 0.06 0.65 6.84 37.20 0.25 0.91 16 27 C -0.16 -1.76 5.22 -26.59 -0.14 -1.90 16 28 H 0.05 0.59 7.60 -51.93 -0.39 0.20 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.47 6.32 -51.93 -0.33 0.14 16 31 H 0.08 1.24 7.54 -51.93 -0.39 0.85 16 32 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 33 H 0.41 4.57 8.75 -34.47 -0.30 4.27 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 36 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 37 H 0.02 0.29 4.49 -51.93 -0.23 0.06 16 38 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 39 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.08 0.71 6.42 -51.93 -0.33 0.38 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 0.69 6.56 -51.93 -0.34 0.35 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.07 0.79 7.72 -51.93 -0.40 0.39 16 49 H 0.09 1.16 6.09 -51.93 -0.32 0.84 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -31.52 375.64 -9.39 -40.91 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.89 Total: 5.02 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 0.53 Total: -10.87 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.25 Total: -59.33 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -2.27 Total: -49.48 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 52.72 SS G_CDS: -0.64 Total: 52.08 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.52 -9.39 -40.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330423243.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.186 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds