Wall clock time and date at job start Tue Mar 31 2020 17:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 H 1.08993 * 109.47649 * 177.11914 * 3 2 1 5 5 N 1.46507 * 109.47106 * 57.11525 * 3 2 1 6 6 S 1.65599 * 119.99324 * 93.58717 * 5 3 2 7 7 O 1.42106 * 106.39644 * 177.02123 * 6 5 3 8 8 O 1.42097 * 106.40595 * 309.93768 * 6 5 3 9 9 N 1.65602 * 107.22011 * 63.48623 * 6 5 3 10 10 C 1.46491 * 120.00128 * 89.99457 * 9 6 5 11 11 C 1.46501 * 119.99573 * 269.99674 * 9 6 5 12 12 H 1.09000 * 109.47052 * 359.97438 * 11 9 6 13 13 C 1.52996 * 109.47326 * 120.00089 * 11 9 6 14 14 C 1.50702 * 109.46736 * 239.99887 * 11 9 6 15 15 H 1.07994 * 120.00465 * 359.97438 * 14 11 9 16 16 C 1.37882 * 119.99446 * 179.97438 * 14 11 9 17 17 N 1.31515 * 120.00351 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99757 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47054 * 60.00227 * 18 16 14 20 20 H 1.48499 * 109.47380 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47173 * 300.00207 * 18 16 14 22 22 C 1.53004 * 109.46726 * 297.12348 * 3 2 1 23 23 C 1.53180 * 109.54232 * 299.81412 * 22 3 2 24 24 C 1.53098 * 109.15690 * 183.24333 * 23 22 3 25 25 O 1.42902 * 109.49054 * 57.47992 * 24 23 22 26 26 C 1.42905 * 114.09490 * 298.89047 * 25 24 23 27 27 C 1.53089 * 109.41627 * 61.15364 * 26 25 24 28 28 H 1.09001 * 109.47159 * 296.13204 * 1 2 3 29 29 H 1.08995 * 109.46695 * 176.13617 * 1 2 3 30 30 H 1.09002 * 109.46846 * 56.13368 * 1 2 3 31 31 H 1.09004 * 109.47087 * 119.99396 * 2 1 3 32 32 H 1.09003 * 109.47193 * 239.99963 * 2 1 3 33 33 H 0.96996 * 120.00378 * 273.58573 * 5 3 2 34 34 H 1.09001 * 109.47137 * 90.00633 * 10 9 6 35 35 H 1.09000 * 109.47348 * 209.99752 * 10 9 6 36 36 H 1.08999 * 109.47448 * 330.00199 * 10 9 6 37 37 H 1.09004 * 109.47180 * 299.99923 * 13 11 9 38 38 H 1.08998 * 109.47281 * 59.99279 * 13 11 9 39 39 H 1.08996 * 109.47825 * 179.97438 * 13 11 9 40 40 H 0.96995 * 119.99979 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.54931 * 60.00028 * 22 3 2 42 42 H 1.09000 * 109.52632 * 303.06818 * 23 22 3 43 43 H 1.09003 * 109.51406 * 63.25425 * 23 22 3 44 44 H 1.09003 * 109.40693 * 297.49805 * 24 23 22 45 45 H 1.09001 * 109.48362 * 177.50657 * 24 23 22 46 46 H 1.08999 * 109.47869 * 301.17018 * 26 25 24 47 47 H 1.09002 * 109.48131 * 181.14092 * 26 25 24 48 48 H 1.09001 * 109.52231 * 182.48509 * 27 26 25 49 49 H 1.09004 * 109.57589 * 62.32910 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1287 1.4430 0.0516 5 7 1.4958 2.1529 1.1599 6 16 2.3650 2.2280 2.5674 7 8 1.6099 3.0326 3.4629 8 8 2.7621 0.8965 2.8654 9 7 3.7541 3.0686 2.2415 10 6 3.7837 4.5245 2.4006 11 6 4.9534 2.3561 1.7940 12 1 4.7413 1.2885 1.7358 13 6 5.3670 2.8704 0.4137 14 6 6.0733 2.5925 2.7744 15 1 5.9083 3.2119 3.6436 16 6 7.3085 2.0180 2.5616 17 7 7.5096 1.2642 1.5029 18 14 8.6968 2.3116 3.7764 19 1 8.2955 1.8134 5.1166 20 1 9.9121 1.5883 3.3236 21 1 8.9863 3.7660 3.8553 22 6 1.5900 2.1425 -1.2839 23 6 2.1618 1.4037 -2.4978 24 6 1.7740 2.1569 -3.7730 25 8 2.2552 3.5004 -3.6982 26 6 1.7161 4.2534 -2.6098 27 6 2.1035 3.5857 -1.2878 28 1 -0.3633 0.4526 0.9226 29 1 -0.3632 -1.0253 -0.0692 30 1 -0.3633 0.5727 -0.8533 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 0.6264 2.5793 1.1035 34 1 4.0886 4.7728 3.4172 35 1 4.4939 4.9530 1.6935 36 1 2.7906 4.9312 2.2096 37 1 4.5570 2.6994 -0.2954 38 1 5.5792 3.9379 0.4723 39 1 6.2595 2.3407 0.0809 40 1 8.3787 0.8604 1.3531 41 1 0.5013 2.1428 -1.3368 42 1 3.2480 1.3590 -2.4186 43 1 1.7563 0.3925 -2.5328 44 1 0.6886 2.1646 -3.8731 45 1 2.2154 1.6604 -4.6371 46 1 0.6300 4.2885 -2.6947 47 1 2.1159 5.2672 -2.6358 48 1 1.6564 4.1335 -0.4582 49 1 3.1884 3.5866 -1.1823 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330423243.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:11 Heat of formation + Delta-G solvation = -159.929667 kcal Electronic energy + Delta-G solvation = -30318.299168 eV Core-core repulsion = 26405.780225 eV Total energy + Delta-G solvation = -3912.518943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.68183 -38.47763 -37.98875 -37.84077 -36.85135 -34.51787 -33.68169 -32.83530 -31.63088 -30.91090 -27.64286 -27.29331 -26.98139 -25.02784 -24.23740 -22.65120 -21.98611 -20.73102 -20.17513 -18.87189 -18.47737 -18.07036 -17.53163 -16.94523 -16.82080 -16.69959 -16.07284 -15.80081 -15.43368 -15.23661 -15.07825 -14.82650 -14.62773 -14.42309 -14.32215 -13.76808 -13.61877 -13.35270 -13.25014 -13.14962 -13.07898 -12.99356 -12.83006 -12.79672 -12.59064 -12.57320 -12.42788 -12.25798 -12.19665 -12.07840 -11.88592 -11.83489 -11.42354 -11.26773 -11.19819 -11.00308 -10.60626 -10.44979 -10.18358 -9.65814 -8.11096 -6.24074 -0.29745 1.42030 1.43915 1.50706 2.06543 2.43261 2.66552 3.09546 3.17069 3.45877 3.60703 3.80001 3.91776 4.09324 4.15961 4.19744 4.29512 4.33760 4.45296 4.51123 4.54414 4.65389 4.68924 4.77803 4.83533 4.87488 4.89825 4.95076 4.96354 5.02135 5.05476 5.12304 5.16314 5.20562 5.21925 5.23097 5.29891 5.37039 5.51285 5.61325 5.62650 5.74574 5.90085 6.14403 6.24676 6.33458 6.39506 6.83029 7.44578 8.92372 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.004888 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.264257 B = 5726.545139 C = 6586.998196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.148 4.148 3 C 0.157 3.843 4 H 0.065 0.935 5 N -1.104 6.104 6 S 2.792 3.208 7 O -1.014 7.014 8 O -1.015 7.015 9 N -0.996 5.996 10 C 0.106 3.894 11 C 0.278 3.722 12 H 0.024 0.976 13 C -0.135 4.135 14 C -0.540 4.540 15 H 0.053 0.947 16 C 0.020 3.980 17 N -0.911 5.911 18 Si 0.952 3.048 19 H -0.281 1.281 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.081 4.081 23 C -0.153 4.153 24 C 0.062 3.938 25 O -0.408 6.408 26 C 0.063 3.937 27 C -0.157 4.157 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.423 0.577 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.264 0.736 41 H 0.103 0.897 42 H 0.054 0.946 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.100 0.900 46 H 0.067 0.933 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.312 3.396 -11.359 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.187 4.187 3 C 0.050 3.950 4 H 0.083 0.917 5 N -0.867 5.867 6 S 2.802 3.198 7 O -0.998 6.998 8 O -0.998 6.998 9 N -0.838 5.838 10 C -0.040 4.040 11 C 0.174 3.826 12 H 0.042 0.958 13 C -0.194 4.194 14 C -0.580 4.580 15 H 0.071 0.929 16 C -0.180 4.180 17 N -0.550 5.550 18 Si 0.778 3.222 19 H -0.207 1.207 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.101 4.101 23 C -0.191 4.191 24 C -0.014 4.014 25 O -0.327 6.327 26 C -0.013 4.013 27 C -0.195 4.195 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.260 0.740 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.121 0.879 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.086 0.914 45 H 0.118 0.882 46 H 0.085 0.915 47 H 0.113 0.887 48 H 0.101 0.899 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.121 2.914 -10.694 18.748 hybrid contribution 0.911 0.061 0.918 1.294 sum -14.210 2.975 -9.776 17.503 Atomic orbital electron populations 1.21740 0.93808 1.02318 1.02334 1.22094 0.98319 0.95766 1.02562 1.20911 0.97352 0.91547 0.85181 0.91666 1.55696 1.32373 1.69100 1.29513 1.01324 0.72352 0.72643 0.73515 1.93513 1.72095 1.70901 1.63328 1.93548 1.83212 1.39178 1.83890 1.57538 1.26063 1.16767 1.83388 1.21299 1.02437 0.78788 1.01467 1.18345 0.81310 0.90348 0.92618 0.95793 1.21992 1.01027 0.99993 0.96383 1.21633 0.96485 1.31065 1.08813 0.92857 1.25586 1.00619 0.94769 0.97054 1.69955 1.24207 1.32850 1.27968 0.85717 0.78723 0.78595 0.79212 1.20656 1.20653 1.19246 1.21425 1.01873 0.94422 0.92392 1.22311 1.01460 1.00657 0.94668 1.22678 0.99397 0.81829 0.97537 1.87914 1.70165 1.24931 1.49731 1.22642 0.98569 0.95140 0.84963 1.22335 1.02010 0.96204 0.98961 0.93379 0.92173 0.90350 0.93687 0.89418 0.74015 0.94376 0.90437 0.90156 0.93887 0.94197 0.91763 0.92681 0.87918 0.92666 0.88671 0.91420 0.88199 0.91503 0.88689 0.89875 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.47 71.98 0.68 -1.98 16 2 C -0.15 -3.65 5.62 30.59 0.17 -3.47 16 3 C 0.16 4.05 2.09 44.99 0.09 4.14 16 4 H 0.07 2.13 5.25 -2.39 -0.01 2.12 16 5 N -1.10 -29.31 4.06 -169.38 -0.69 -29.99 16 6 S 2.79 106.54 5.99 -56.49 -0.34 106.20 16 7 O -1.01 -40.83 17.21 -128.00 -2.20 -43.04 16 8 O -1.02 -47.76 15.90 -128.00 -2.03 -49.80 16 9 N -1.00 -40.00 3.12 -520.47 -1.62 -41.62 16 10 C 0.11 3.59 9.53 127.77 1.22 4.81 16 11 C 0.28 13.38 1.87 44.24 0.08 13.46 16 12 H 0.02 1.33 6.79 -2.39 -0.02 1.31 16 13 C -0.13 -5.87 8.81 71.98 0.63 -5.24 16 14 C -0.54 -29.29 8.37 25.60 0.21 -29.07 16 15 H 0.05 2.89 7.65 -2.91 -0.02 2.87 16 16 C 0.02 1.08 5.30 84.66 0.45 1.53 16 17 N -0.91 -50.92 11.32 21.45 0.24 -50.68 16 18 Si 0.95 43.57 29.54 68.60 2.03 45.59 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 C -0.08 -1.54 1.67 -10.67 -0.02 -1.56 16 23 C -0.15 -2.80 4.98 30.69 0.15 -2.65 16 24 C 0.06 1.02 6.84 72.01 0.49 1.51 16 25 O -0.41 -8.96 10.77 -148.98 -1.60 -10.56 16 26 C 0.06 1.13 6.84 72.01 0.49 1.62 16 27 C -0.16 -3.20 5.22 30.68 0.16 -3.04 16 28 H 0.05 0.94 7.60 -2.39 -0.02 0.92 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.05 6.32 -2.39 -0.02 1.03 16 31 H 0.04 1.43 7.54 -2.39 -0.02 1.41 16 32 H 0.09 1.86 6.36 -2.39 -0.02 1.84 16 33 H 0.42 8.44 8.75 -96.75 -0.85 7.59 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 2.52 6.43 -2.39 -0.02 2.51 16 36 H 0.08 2.17 7.79 -2.39 -0.02 2.15 16 37 H 0.04 1.60 4.49 -2.38 -0.01 1.59 16 38 H 0.04 1.65 6.66 -2.39 -0.02 1.63 16 39 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 40 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.10 1.45 6.42 -2.39 -0.02 1.43 16 42 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 1.41 6.56 -2.39 -0.02 1.40 16 44 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.08 1.52 7.72 -2.39 -0.02 1.50 16 49 H 0.06 1.52 6.09 -2.39 -0.01 1.51 16 Total: -1.00 -70.00 375.64 -1.29 -71.28 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.11 Total: 22.55 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 4.83 Total: -19.93 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -2.07 Total: -122.30 kcal Atomic # 8 Polarization: -97.55 SS G_CDS: -5.84 Total: -103.40 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 106.54 SS G_CDS: -0.34 Total: 106.20 kcal Total: -70.00 -1.29 -71.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330423243.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.647 kcal (2) G-P(sol) polarization free energy of solvation -69.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds