Wall clock time and date at job start Tue Mar 31 2020 17:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46583 * 2 1 4 4 H 1.08995 * 109.46960 * 302.26726 * 3 2 1 5 5 N 1.46490 * 109.47272 * 62.27340 * 3 2 1 6 6 S 1.65605 * 120.00060 * 230.53076 * 5 3 2 7 7 O 1.42095 * 106.40398 * 180.75540 * 6 5 3 8 8 O 1.42097 * 106.40014 * 313.67751 * 6 5 3 9 9 N 1.65595 * 107.21785 * 67.21397 * 6 5 3 10 10 C 1.46505 * 120.00086 * 277.16037 * 9 6 5 11 11 C 1.46500 * 120.00193 * 97.16004 * 9 6 5 12 12 H 1.09001 * 109.46983 * 353.71503 * 11 9 6 13 13 C 1.53006 * 109.47074 * 233.71705 * 11 9 6 14 14 C 1.50698 * 109.47467 * 113.71577 * 11 9 6 15 15 H 1.08004 * 119.99638 * 0.02562 * 14 11 9 16 16 C 1.37876 * 120.00438 * 180.02562 * 14 11 9 17 17 N 1.31520 * 119.99678 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 120.00281 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47035 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47144 * 119.99998 * 18 16 14 21 21 H 1.48506 * 109.46949 * 239.99859 * 18 16 14 22 22 C 1.53004 * 109.47057 * 182.27230 * 3 2 1 23 23 C 1.53172 * 109.54302 * 182.21383 * 22 3 2 24 24 C 1.53095 * 109.16238 * 183.15095 * 23 22 3 25 25 O 1.42900 * 109.41546 * 57.60807 * 24 23 22 26 26 C 1.42901 * 114.09651 * 298.84223 * 25 24 23 27 27 C 1.53094 * 109.41642 * 61.16073 * 26 25 24 28 28 H 1.08993 * 109.47633 * 292.96887 * 1 2 3 29 29 H 1.08998 * 109.47283 * 52.98000 * 1 2 3 30 30 H 1.09007 * 109.46511 * 172.97178 * 1 2 3 31 31 H 1.08997 * 109.47450 * 239.99982 * 2 1 3 32 32 H 1.08997 * 109.47227 * 119.99369 * 2 1 3 33 33 H 0.97004 * 120.00684 * 50.52473 * 5 3 2 34 34 H 1.08996 * 109.47344 * 94.75531 * 10 9 6 35 35 H 1.09001 * 109.46779 * 214.75551 * 10 9 6 36 36 H 1.08999 * 109.46697 * 334.75146 * 10 9 6 37 37 H 1.08993 * 109.47108 * 307.60300 * 13 11 9 38 38 H 1.08998 * 109.47087 * 67.60685 * 13 11 9 39 39 H 1.09002 * 109.46816 * 187.60459 * 13 11 9 40 40 H 0.96998 * 120.00014 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.61321 * 302.43703 * 22 3 2 42 42 H 1.08996 * 109.52173 * 63.24882 * 23 22 3 43 43 H 1.08997 * 109.57476 * 303.08858 * 23 22 3 44 44 H 1.09001 * 109.48312 * 177.59181 * 24 23 22 45 45 H 1.09005 * 109.48354 * 297.62632 * 24 23 22 46 46 H 1.09004 * 109.48413 * 301.17561 * 26 25 24 47 47 H 1.09007 * 109.48171 * 181.13856 * 26 25 24 48 48 H 1.09003 * 109.52266 * 182.48685 * 27 26 25 49 49 H 1.08993 * 109.52284 * 62.29680 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6437 1.9679 -0.8689 5 7 1.5968 2.1172 1.2225 6 16 0.8420 3.5883 1.1295 7 8 0.5577 3.9787 2.4658 8 8 1.6137 4.3793 0.2362 9 7 -0.6205 3.3431 0.3926 10 6 -0.7034 3.2822 -1.0688 11 6 -1.8316 3.1872 1.2021 12 1 -1.5609 3.1491 2.2572 13 6 -2.5429 1.8902 0.8110 14 6 -2.7510 4.3566 0.9612 15 1 -2.4622 5.1378 0.2735 16 6 -3.9607 4.4295 1.6186 17 7 -4.3125 3.4780 2.4556 18 14 -5.1006 5.8787 1.3194 19 1 -4.4772 6.8049 0.3402 20 1 -6.3951 5.3877 0.7823 21 1 -5.3355 6.5960 2.5984 22 6 3.5688 1.4431 -0.0572 23 6 4.0832 2.8848 -0.0016 24 6 5.6080 2.8800 -0.1385 25 8 5.9730 2.2381 -1.3619 26 6 5.5596 0.8731 -1.4505 27 6 4.0328 0.7972 -1.3663 28 1 -0.3634 0.4010 0.9461 29 1 -0.3634 0.6187 -0.8205 30 1 -0.3632 -1.0200 -0.1258 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.7453 1.7022 2.0866 34 1 -0.6553 2.2425 -1.3925 35 1 -1.6449 3.7220 -1.3979 36 1 0.1282 3.8369 -1.5033 37 1 -2.6930 1.8694 -0.2684 38 1 -1.9335 1.0373 1.1096 39 1 -3.5090 1.8400 1.3132 40 1 -5.1634 3.5294 2.9185 41 1 3.9668 0.8811 0.7878 42 1 3.8045 3.3344 0.9514 43 1 3.6460 3.4603 -0.8175 44 1 5.9759 3.9061 -0.1426 45 1 6.0467 2.3397 0.7004 46 1 5.9976 0.3065 -0.6287 47 1 5.8925 0.4532 -2.3998 48 1 3.7181 -0.2462 -1.3893 49 1 3.5946 1.3295 -2.2105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330423248.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:15 Heat of formation + Delta-G solvation = -136.571566 kcal Electronic energy + Delta-G solvation = -29970.863180 eV Core-core repulsion = 26059.357121 eV Total energy + Delta-G solvation = -3911.506059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.77553 -37.27999 -36.57271 -36.12810 -35.20210 -32.92907 -32.56853 -31.86712 -30.87960 -29.08867 -26.93141 -25.67654 -25.09058 -23.81802 -23.18975 -21.17685 -20.67382 -20.26430 -18.81999 -17.27980 -16.87581 -16.55108 -16.19655 -16.10664 -15.81226 -15.12585 -14.87544 -14.64773 -14.34697 -14.07960 -13.70338 -13.59292 -13.49483 -13.20460 -12.75213 -12.57753 -12.34806 -12.02845 -11.90928 -11.74873 -11.60670 -11.52790 -11.46117 -11.26977 -11.25583 -11.14116 -11.00858 -10.85646 -10.74648 -10.68659 -10.46040 -10.33031 -10.28334 -10.20544 -10.06191 -9.76886 -9.26539 -9.13055 -8.43241 -7.94778 -6.06626 -4.13682 1.23913 3.27576 3.35970 3.40021 3.51352 3.77733 4.12834 4.40697 4.44027 4.61076 4.71213 4.88687 4.99411 5.03465 5.07338 5.14872 5.24568 5.27196 5.29690 5.38432 5.50673 5.54735 5.61847 5.66594 5.73610 5.77642 5.82962 5.86162 6.02765 6.03785 6.06123 6.18645 6.25635 6.38590 6.46025 6.51198 6.68835 6.81677 6.88192 7.06447 7.08707 7.18349 7.51430 7.64046 7.80788 8.07138 8.29302 8.89060 9.52255 10.98195 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.003711 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.220625 B = 7544.314791 C = 8088.035873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.131 4.131 3 C 0.164 3.836 4 H 0.086 0.914 5 N -1.127 6.127 6 S 2.776 3.224 7 O -0.977 6.977 8 O -0.992 6.992 9 N -0.986 5.986 10 C 0.092 3.908 11 C 0.270 3.730 12 H 0.058 0.942 13 C -0.152 4.152 14 C -0.520 4.520 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.896 3.104 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.099 4.099 23 C -0.149 4.149 24 C 0.061 3.939 25 O -0.385 6.385 26 C 0.062 3.938 27 C -0.152 4.152 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.410 0.590 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.020 0.980 39 H 0.092 0.908 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.046 0.954 46 H 0.047 0.953 47 H 0.091 0.909 48 H 0.076 0.924 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.275 -9.721 -6.604 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.170 4.170 3 C 0.056 3.944 4 H 0.105 0.895 5 N -0.883 5.883 6 S 2.785 3.215 7 O -0.961 6.961 8 O -0.975 6.975 9 N -0.829 5.829 10 C -0.055 4.055 11 C 0.167 3.833 12 H 0.076 0.924 13 C -0.211 4.211 14 C -0.560 4.560 15 H 0.080 0.920 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.120 4.120 23 C -0.187 4.187 24 C -0.015 4.015 25 O -0.304 6.304 26 C -0.015 4.015 27 C -0.190 4.190 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.243 0.757 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.109 0.891 48 H 0.095 0.905 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.541 -8.733 -6.492 18.972 hybrid contribution -1.077 0.017 0.420 1.156 sum 14.464 -8.716 -6.072 17.945 Atomic orbital electron populations 1.22077 0.94515 1.01510 1.03806 1.21929 0.97242 0.95615 1.02182 1.20742 0.92889 0.93921 0.86800 0.89549 1.56312 1.76119 1.42205 1.13687 1.02047 0.72869 0.73338 0.73277 1.93611 1.84726 1.80861 1.36899 1.93544 1.70206 1.66813 1.66960 1.57623 1.23632 1.87845 1.13798 1.21414 1.03621 0.99922 0.80516 1.18700 0.80009 0.94397 0.90213 0.92439 1.22244 1.03238 0.96006 0.99602 1.21434 1.02177 1.06512 1.25887 0.92013 1.24899 0.97801 0.96309 0.94882 1.69868 1.22587 1.32590 1.27784 0.86473 0.80431 0.82538 0.78165 1.19733 1.21008 1.20911 1.21603 0.95659 0.96834 0.97866 1.22258 0.95649 0.96514 1.04292 1.22620 0.94780 0.97904 0.86240 1.87922 1.78793 1.24888 1.38780 1.22545 0.93796 0.83426 1.01725 1.22292 0.96776 1.01625 0.98297 0.91098 0.91927 0.93102 0.91138 0.91713 0.75719 0.94062 0.90203 0.91982 0.95082 0.96110 0.88963 0.92802 0.90816 0.91084 0.89411 0.88918 0.93605 0.93474 0.89090 0.90502 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 8.96 37.16 0.33 -1.59 16 2 C -0.13 -1.27 5.40 -26.73 -0.14 -1.42 16 3 C 0.16 1.87 1.86 -67.93 -0.13 1.74 16 4 H 0.09 1.05 6.84 -51.93 -0.36 0.70 16 5 N -1.13 -15.29 4.12 -4.89 -0.02 -15.31 16 6 S 2.78 52.00 5.93 -107.50 -0.64 51.36 16 7 O -0.98 -22.51 16.57 -57.17 -0.95 -23.46 16 8 O -0.99 -19.30 14.11 -57.17 -0.81 -20.10 16 9 N -0.99 -19.41 3.12 -115.85 -0.36 -19.77 16 10 C 0.09 1.53 8.53 59.85 0.51 2.04 16 11 C 0.27 6.40 2.61 -69.08 -0.18 6.22 16 12 H 0.06 1.54 6.85 -51.93 -0.36 1.18 16 13 C -0.15 -3.29 8.99 37.16 0.33 -2.95 16 14 C -0.52 -13.88 8.12 -34.44 -0.28 -14.16 16 15 H 0.06 1.65 7.70 -52.48 -0.40 1.25 16 16 C 0.06 1.70 5.28 -17.82 -0.09 1.61 16 17 N -0.89 -24.59 11.29 55.43 0.63 -23.96 16 18 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.10 -1.02 2.03 -90.44 -0.18 -1.20 16 23 C -0.15 -1.84 4.05 -26.59 -0.11 -1.94 16 24 C 0.06 0.67 6.84 37.21 0.25 0.92 16 25 O -0.39 -4.50 10.77 -35.23 -0.38 -4.88 16 26 C 0.06 0.55 6.84 37.21 0.25 0.80 16 27 C -0.15 -1.32 5.04 -26.59 -0.13 -1.45 16 28 H 0.07 0.99 5.69 -51.93 -0.30 0.69 16 29 H 0.06 0.77 5.67 -51.93 -0.29 0.48 16 30 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 31 H 0.07 0.57 6.46 -51.93 -0.34 0.24 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.41 4.90 8.96 -34.47 -0.31 4.59 16 34 H 0.04 0.58 5.62 -51.93 -0.29 0.29 16 35 H 0.08 1.43 7.45 -51.93 -0.39 1.04 16 36 H 0.06 0.97 7.03 -51.93 -0.36 0.60 16 37 H 0.03 0.62 7.24 -51.93 -0.38 0.25 16 38 H 0.02 0.39 5.11 -51.93 -0.27 0.12 16 39 H 0.09 2.28 5.90 -51.93 -0.31 1.97 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.94 7.13 -51.93 -0.37 0.57 16 43 H 0.09 1.26 7.46 -51.93 -0.39 0.87 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.08 0.53 6.63 -51.93 -0.34 0.19 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -31.63 372.51 -9.46 -41.09 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.96 Total: 4.70 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 0.44 Total: -11.37 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.24 Total: -59.05 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -2.13 Total: -48.44 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 52.00 SS G_CDS: -0.64 Total: 51.36 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.63 -9.46 -41.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330423248.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.486 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds