Wall clock time and date at job start Tue Mar 31 2020 17:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46583 * 2 1 4 4 H 1.08995 * 109.46960 * 302.26726 * 3 2 1 5 5 N 1.46490 * 109.47272 * 62.27340 * 3 2 1 6 6 S 1.65605 * 120.00060 * 230.53076 * 5 3 2 7 7 O 1.42095 * 106.40398 * 180.75540 * 6 5 3 8 8 O 1.42097 * 106.40014 * 313.67751 * 6 5 3 9 9 N 1.65595 * 107.21785 * 67.21397 * 6 5 3 10 10 C 1.46505 * 120.00086 * 277.16037 * 9 6 5 11 11 C 1.46500 * 120.00193 * 97.16004 * 9 6 5 12 12 H 1.09001 * 109.46983 * 353.71503 * 11 9 6 13 13 C 1.53006 * 109.47074 * 233.71705 * 11 9 6 14 14 C 1.50698 * 109.47467 * 113.71577 * 11 9 6 15 15 H 1.08004 * 119.99638 * 0.02562 * 14 11 9 16 16 C 1.37876 * 120.00438 * 180.02562 * 14 11 9 17 17 N 1.31520 * 119.99678 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 120.00281 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47035 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47144 * 119.99998 * 18 16 14 21 21 H 1.48506 * 109.46949 * 239.99859 * 18 16 14 22 22 C 1.53004 * 109.47057 * 182.27230 * 3 2 1 23 23 C 1.53172 * 109.54302 * 182.21383 * 22 3 2 24 24 C 1.53095 * 109.16238 * 183.15095 * 23 22 3 25 25 O 1.42900 * 109.41546 * 57.60807 * 24 23 22 26 26 C 1.42901 * 114.09651 * 298.84223 * 25 24 23 27 27 C 1.53094 * 109.41642 * 61.16073 * 26 25 24 28 28 H 1.08993 * 109.47633 * 292.96887 * 1 2 3 29 29 H 1.08998 * 109.47283 * 52.98000 * 1 2 3 30 30 H 1.09007 * 109.46511 * 172.97178 * 1 2 3 31 31 H 1.08997 * 109.47450 * 239.99982 * 2 1 3 32 32 H 1.08997 * 109.47227 * 119.99369 * 2 1 3 33 33 H 0.97004 * 120.00684 * 50.52473 * 5 3 2 34 34 H 1.08996 * 109.47344 * 94.75531 * 10 9 6 35 35 H 1.09001 * 109.46779 * 214.75551 * 10 9 6 36 36 H 1.08999 * 109.46697 * 334.75146 * 10 9 6 37 37 H 1.08993 * 109.47108 * 307.60300 * 13 11 9 38 38 H 1.08998 * 109.47087 * 67.60685 * 13 11 9 39 39 H 1.09002 * 109.46816 * 187.60459 * 13 11 9 40 40 H 0.96998 * 120.00014 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.61321 * 302.43703 * 22 3 2 42 42 H 1.08996 * 109.52173 * 63.24882 * 23 22 3 43 43 H 1.08997 * 109.57476 * 303.08858 * 23 22 3 44 44 H 1.09001 * 109.48312 * 177.59181 * 24 23 22 45 45 H 1.09005 * 109.48354 * 297.62632 * 24 23 22 46 46 H 1.09004 * 109.48413 * 301.17561 * 26 25 24 47 47 H 1.09007 * 109.48171 * 181.13856 * 26 25 24 48 48 H 1.09003 * 109.52266 * 182.48685 * 27 26 25 49 49 H 1.08993 * 109.52284 * 62.29680 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6437 1.9679 -0.8689 5 7 1.5968 2.1172 1.2225 6 16 0.8420 3.5883 1.1295 7 8 0.5577 3.9787 2.4658 8 8 1.6137 4.3793 0.2362 9 7 -0.6205 3.3431 0.3926 10 6 -0.7034 3.2822 -1.0688 11 6 -1.8316 3.1872 1.2021 12 1 -1.5609 3.1491 2.2572 13 6 -2.5429 1.8902 0.8110 14 6 -2.7510 4.3566 0.9612 15 1 -2.4622 5.1378 0.2735 16 6 -3.9607 4.4295 1.6186 17 7 -4.3125 3.4780 2.4556 18 14 -5.1006 5.8787 1.3194 19 1 -4.4772 6.8049 0.3402 20 1 -6.3951 5.3877 0.7823 21 1 -5.3355 6.5960 2.5984 22 6 3.5688 1.4431 -0.0572 23 6 4.0832 2.8848 -0.0016 24 6 5.6080 2.8800 -0.1385 25 8 5.9730 2.2381 -1.3619 26 6 5.5596 0.8731 -1.4505 27 6 4.0328 0.7972 -1.3663 28 1 -0.3634 0.4010 0.9461 29 1 -0.3634 0.6187 -0.8205 30 1 -0.3632 -1.0200 -0.1258 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.7453 1.7022 2.0866 34 1 -0.6553 2.2425 -1.3925 35 1 -1.6449 3.7220 -1.3979 36 1 0.1282 3.8369 -1.5033 37 1 -2.6930 1.8694 -0.2684 38 1 -1.9335 1.0373 1.1096 39 1 -3.5090 1.8400 1.3132 40 1 -5.1634 3.5294 2.9185 41 1 3.9668 0.8811 0.7878 42 1 3.8045 3.3344 0.9514 43 1 3.6460 3.4603 -0.8175 44 1 5.9759 3.9061 -0.1426 45 1 6.0467 2.3397 0.7004 46 1 5.9976 0.3065 -0.6287 47 1 5.8925 0.4532 -2.3998 48 1 3.7181 -0.2462 -1.3893 49 1 3.5946 1.3295 -2.2105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330423248.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:14 Heat of formation + Delta-G solvation = -159.412532 kcal Electronic energy + Delta-G solvation = -29971.853639 eV Core-core repulsion = 26059.357121 eV Total energy + Delta-G solvation = -3912.496518 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.60618 -38.39728 -38.13980 -37.68428 -36.83093 -34.54693 -33.77872 -32.82221 -31.72187 -30.87034 -27.91503 -27.22928 -26.94078 -24.66124 -23.98389 -22.58905 -21.91463 -21.15301 -20.23867 -18.78292 -18.55318 -18.11557 -17.33392 -17.13014 -16.87643 -16.66604 -16.04288 -15.69358 -15.48797 -15.16542 -15.10658 -14.84850 -14.51672 -14.40084 -14.28943 -13.80090 -13.53302 -13.45391 -13.32530 -13.17905 -13.06633 -12.94866 -12.87963 -12.73785 -12.55069 -12.44597 -12.26760 -12.18822 -12.13137 -12.02941 -11.87533 -11.78142 -11.50933 -11.34184 -11.17190 -11.04888 -10.68296 -10.47437 -10.10870 -9.59563 -8.11014 -6.24988 -0.25808 1.39291 1.42572 1.52715 2.10474 2.42701 2.69502 3.03811 3.16334 3.48034 3.57723 3.84208 3.91123 4.12247 4.14597 4.18621 4.26160 4.37049 4.42931 4.45707 4.58415 4.66764 4.71942 4.76846 4.82206 4.84107 4.89377 4.93971 5.02596 5.04947 5.06936 5.12661 5.19140 5.22233 5.26087 5.30056 5.34080 5.45175 5.57735 5.62385 5.64385 5.76484 5.90742 6.13152 6.26938 6.33721 6.34560 6.83424 7.43913 8.92028 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.003711 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.220625 B = 7544.314791 C = 8088.035873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.122 4.122 3 C 0.158 3.842 4 H 0.079 0.921 5 N -1.110 6.110 6 S 2.790 3.210 7 O -1.025 7.025 8 O -1.003 7.003 9 N -0.992 5.992 10 C 0.089 3.911 11 C 0.277 3.723 12 H 0.021 0.979 13 C -0.137 4.137 14 C -0.540 4.540 15 H 0.052 0.948 16 C 0.018 3.982 17 N -0.912 5.912 18 Si 0.951 3.049 19 H -0.272 1.272 20 H -0.273 1.273 21 H -0.284 1.284 22 C -0.095 4.095 23 C -0.152 4.152 24 C 0.063 3.937 25 O -0.406 6.406 26 C 0.055 3.945 27 C -0.147 4.147 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.420 0.580 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.264 0.736 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.107 0.893 48 H 0.104 0.896 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.423 -11.774 -7.904 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.160 4.160 3 C 0.051 3.949 4 H 0.097 0.903 5 N -0.871 5.871 6 S 2.800 3.200 7 O -1.009 7.009 8 O -0.986 6.986 9 N -0.834 5.834 10 C -0.057 4.057 11 C 0.173 3.827 12 H 0.039 0.961 13 C -0.196 4.196 14 C -0.579 4.579 15 H 0.071 0.929 16 C -0.182 4.182 17 N -0.551 5.551 18 Si 0.777 3.223 19 H -0.196 1.196 20 H -0.199 1.199 21 H -0.210 1.210 22 C -0.115 4.115 23 C -0.190 4.190 24 C -0.014 4.014 25 O -0.325 6.325 26 C -0.021 4.021 27 C -0.185 4.185 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.255 0.745 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.125 0.875 48 H 0.122 0.878 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.692 -10.789 -7.811 21.355 hybrid contribution -1.336 0.626 0.790 1.674 sum 15.356 -10.163 -7.020 19.707 Atomic orbital electron populations 1.22066 0.96131 1.01972 1.02021 1.21900 0.95639 0.94271 1.04223 1.21036 0.93933 0.94804 0.85155 0.90292 1.55834 1.75069 1.40873 1.15333 1.01359 0.72652 0.74131 0.71899 1.93540 1.85457 1.82443 1.39498 1.93530 1.70121 1.67972 1.66937 1.57462 1.22764 1.88373 1.14776 1.21579 1.03298 1.02021 0.78770 1.18323 0.80934 0.94493 0.88958 0.96095 1.22027 1.01740 0.95932 0.99908 1.21763 1.03039 1.07403 1.25732 0.92939 1.25598 0.99197 0.98539 0.94822 1.69980 1.22968 1.33824 1.28335 0.85615 0.79020 0.79804 0.77844 1.19614 1.19862 1.21046 1.21592 0.94431 0.95734 0.99723 1.22231 0.96842 0.97658 1.02270 1.22600 0.93689 0.98303 0.86813 1.87899 1.79061 1.26558 1.39013 1.22786 0.93859 0.82195 1.03294 1.22292 0.96719 1.02832 0.96667 0.93579 0.92648 0.91772 0.88362 0.90289 0.74463 0.90974 0.91593 0.90985 0.93874 0.93529 0.91962 0.92703 0.89097 0.92720 0.92032 0.89211 0.91900 0.91992 0.87464 0.87762 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 8.96 71.98 0.64 -2.80 16 2 C -0.12 -1.91 5.40 30.60 0.17 -1.74 16 3 C 0.16 3.22 1.86 45.00 0.08 3.31 16 4 H 0.08 1.77 6.84 -2.39 -0.02 1.75 16 5 N -1.11 -29.14 4.12 -169.40 -0.70 -29.84 16 6 S 2.79 106.20 5.93 -56.49 -0.34 105.87 16 7 O -1.03 -49.03 16.57 -128.00 -2.12 -51.15 16 8 O -1.00 -39.56 14.11 -128.00 -1.81 -41.37 16 9 N -0.99 -39.39 3.12 -520.43 -1.62 -41.02 16 10 C 0.09 2.91 8.53 127.77 1.09 4.00 16 11 C 0.28 13.46 2.61 44.25 0.12 13.58 16 12 H 0.02 1.18 6.85 -2.39 -0.02 1.16 16 13 C -0.14 -5.94 8.99 71.98 0.65 -5.29 16 14 C -0.54 -29.44 8.12 25.60 0.21 -29.24 16 15 H 0.05 2.88 7.70 -2.91 -0.02 2.86 16 16 C 0.02 1.00 5.28 84.65 0.45 1.44 16 17 N -0.91 -51.35 11.29 21.45 0.24 -51.11 16 18 Si 0.95 43.74 29.54 68.60 2.03 45.76 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 C -0.09 -1.69 2.03 -10.67 -0.02 -1.71 16 23 C -0.15 -3.61 4.05 30.68 0.12 -3.49 16 24 C 0.06 1.28 6.84 72.01 0.49 1.78 16 25 O -0.41 -8.73 10.77 -148.98 -1.60 -10.34 16 26 C 0.05 0.79 6.84 72.01 0.49 1.28 16 27 C -0.15 -2.04 5.04 30.69 0.15 -1.88 16 28 H 0.05 1.19 5.69 -2.39 -0.01 1.18 16 29 H 0.05 1.22 5.67 -2.39 -0.01 1.21 16 30 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.10 1.08 6.46 -2.39 -0.02 1.06 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.42 9.61 8.96 -96.74 -0.87 8.74 16 34 H 0.07 1.90 5.62 -2.39 -0.01 1.89 16 35 H 0.07 2.35 7.45 -2.39 -0.02 2.33 16 36 H 0.07 2.20 7.03 -2.39 -0.02 2.19 16 37 H 0.04 1.71 7.24 -2.39 -0.02 1.70 16 38 H 0.05 1.74 5.11 -2.39 -0.01 1.73 16 39 H 0.06 3.11 5.90 -2.39 -0.01 3.10 16 40 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.05 1.45 7.13 -2.39 -0.02 1.43 16 43 H 0.06 1.77 7.46 -2.39 -0.02 1.75 16 44 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 46 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 47 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 48 H 0.10 0.90 6.63 -2.39 -0.02 0.88 16 49 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -70.45 372.51 -1.19 -71.64 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.09 Total: 22.31 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 4.64 Total: -20.76 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -2.08 Total: -121.97 kcal Atomic # 8 Polarization: -97.33 SS G_CDS: -5.53 Total: -102.86 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 106.20 SS G_CDS: -0.34 Total: 105.87 kcal Total: -70.45 -1.19 -71.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330423248.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.770 kcal (2) G-P(sol) polarization free energy of solvation -70.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds