Wall clock time and date at job start Tue Mar 31 2020 17:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47091 * 2 1 4 4 H 1.08994 * 109.47218 * 177.29299 * 3 2 1 5 5 N 1.46499 * 109.47080 * 57.29032 * 3 2 1 6 6 S 1.65604 * 119.99735 * 93.88745 * 5 3 2 7 7 O 1.42094 * 106.40328 * 179.88970 * 6 5 3 8 8 O 1.42108 * 106.40028 * 312.81068 * 6 5 3 9 9 N 1.65600 * 107.21981 * 66.34698 * 6 5 3 10 10 C 1.46498 * 120.00247 * 270.00484 * 9 6 5 11 11 C 1.46498 * 119.99671 * 89.99702 * 9 6 5 12 12 H 1.09000 * 109.47552 * 0.02562 * 11 9 6 13 13 C 1.53003 * 109.47523 * 240.00352 * 11 9 6 14 14 C 1.50699 * 109.46936 * 120.00330 * 11 9 6 15 15 H 1.07998 * 119.99971 * 34.23127 * 14 11 9 16 16 C 1.37873 * 120.00176 * 214.23340 * 14 11 9 17 17 N 1.31517 * 120.00319 * 183.60167 * 16 14 11 18 18 Si 1.86803 * 120.00199 * 3.59816 * 16 14 11 19 19 H 1.48503 * 109.47120 * 93.36413 * 18 16 14 20 20 H 1.48500 * 109.47373 * 213.36861 * 18 16 14 21 21 H 1.48498 * 109.46893 * 333.36929 * 18 16 14 22 22 C 1.52998 * 109.46979 * 297.29288 * 3 2 1 23 23 C 1.53174 * 109.54379 * 299.82473 * 22 3 2 24 24 C 1.53108 * 109.15566 * 183.24386 * 23 22 3 25 25 O 1.42898 * 109.48961 * 57.46984 * 24 23 22 26 26 C 1.42902 * 114.09876 * 298.89370 * 25 24 23 27 27 C 1.53088 * 109.41751 * 61.15400 * 26 25 24 28 28 H 1.09006 * 109.47333 * 56.69117 * 1 2 3 29 29 H 1.09000 * 109.47219 * 296.69920 * 1 2 3 30 30 H 1.09002 * 109.47463 * 176.69279 * 1 2 3 31 31 H 1.08991 * 109.47173 * 119.99685 * 2 1 3 32 32 H 1.08997 * 109.47285 * 240.00055 * 2 1 3 33 33 H 0.96994 * 120.00506 * 273.88591 * 5 3 2 34 34 H 1.09001 * 109.47296 * 89.99679 * 10 9 6 35 35 H 1.08998 * 109.46943 * 209.99400 * 10 9 6 36 36 H 1.09004 * 109.46996 * 329.99465 * 10 9 6 37 37 H 1.08999 * 109.46619 * 305.86225 * 13 11 9 38 38 H 1.09003 * 109.46909 * 65.85866 * 13 11 9 39 39 H 1.08995 * 109.47214 * 185.86109 * 13 11 9 40 40 H 0.97002 * 119.99978 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.54342 * 59.99830 * 22 3 2 42 42 H 1.09000 * 109.52512 * 303.05666 * 23 22 3 43 43 H 1.08994 * 109.52799 * 63.24956 * 23 22 3 44 44 H 1.09005 * 109.40540 * 297.48727 * 24 23 22 45 45 H 1.09007 * 109.49105 * 177.51043 * 24 23 22 46 46 H 1.08998 * 109.47716 * 301.16961 * 26 25 24 47 47 H 1.09002 * 109.47965 * 181.14063 * 26 25 24 48 48 H 1.08998 * 109.52287 * 182.48323 * 27 26 25 49 49 H 1.09005 * 109.57214 * 62.33117 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1288 1.4430 0.0485 5 7 1.4991 2.1518 1.1622 6 16 2.3756 2.2318 2.5650 7 8 1.5914 2.9773 3.4861 8 8 2.8368 0.9132 2.8257 9 7 3.7213 3.1442 2.2507 10 6 4.9487 2.5001 1.7765 11 6 3.6844 4.5956 2.4469 12 1 2.6962 4.8895 2.8005 13 6 3.9812 5.2973 1.1201 14 6 4.7206 4.9911 3.4671 15 1 5.6552 4.4529 3.5241 16 6 4.4756 6.0399 4.3277 17 7 5.4069 6.4308 5.1701 18 14 2.8207 6.9060 4.2974 19 1 1.9203 6.2885 5.3040 20 1 3.0085 8.3439 4.6172 21 1 2.2176 6.7739 2.9468 22 6 1.5864 2.1439 -1.2819 23 6 2.1546 1.4062 -2.4981 24 6 1.7632 2.1608 -3.7715 25 8 2.2446 3.5042 -3.6966 26 6 1.7087 4.2561 -2.6059 27 6 2.0998 3.5870 -1.2857 28 1 -0.3634 0.5644 -0.8589 29 1 -0.3634 0.4617 0.9181 30 1 -0.3634 -1.0259 -0.0593 31 1 1.8933 -0.5137 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 0.6276 2.5744 1.1101 34 1 4.9425 2.4639 0.6871 35 1 5.8130 3.0709 2.1161 36 1 5.0038 1.4865 2.1735 37 1 4.9223 4.9253 0.7149 38 1 3.1761 5.0946 0.4138 39 1 4.0567 6.3719 1.2863 40 1 5.2342 7.1685 5.7759 41 1 0.4975 2.1441 -1.3317 42 1 3.2411 1.3615 -2.4222 43 1 1.7491 0.3951 -2.5332 44 1 0.6775 2.1686 -3.8686 45 1 2.2020 1.6651 -4.6375 46 1 0.6224 4.2913 -2.6877 47 1 2.1084 5.2698 -2.6321 48 1 1.6552 4.1340 -0.4543 49 1 3.1850 3.5878 -1.1833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330423250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:20 Heat of formation + Delta-G solvation = -136.601417 kcal Electronic energy + Delta-G solvation = -30219.759334 eV Core-core repulsion = 26308.251980 eV Total energy + Delta-G solvation = -3911.507354 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.92787 -37.38310 -36.65542 -36.29670 -35.26900 -32.83059 -32.46627 -32.00576 -30.91423 -29.94741 -26.81940 -25.72329 -25.16715 -24.30777 -23.54573 -21.28290 -20.70290 -19.85556 -18.77549 -17.49471 -17.31070 -16.70673 -16.31083 -16.15187 -15.87730 -15.18520 -15.04258 -14.76027 -14.28685 -14.22981 -13.80133 -13.60171 -13.47126 -13.24363 -12.89706 -12.62779 -12.50818 -12.43826 -11.98748 -11.90138 -11.85306 -11.73656 -11.52063 -11.50740 -11.43264 -11.33322 -11.20099 -11.12098 -10.85431 -10.73428 -10.69287 -10.47467 -10.42878 -10.28342 -9.77197 -9.74358 -9.35697 -9.25823 -8.61019 -8.06941 -6.17167 -4.17566 1.13784 3.26070 3.34568 3.41655 3.43985 3.72926 4.05180 4.36523 4.38028 4.52102 4.63480 4.83320 4.87493 4.92963 5.04079 5.10033 5.15166 5.16868 5.21461 5.30859 5.38004 5.47252 5.50744 5.57814 5.64121 5.67554 5.77384 5.86155 5.91607 5.93621 5.99252 6.02362 6.10143 6.15800 6.23852 6.31565 6.40745 6.42306 6.57421 6.63166 6.91972 7.03804 7.11081 7.19752 7.51287 7.66522 8.42976 8.87395 9.44407 10.94846 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013769 B = 0.004946 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.007780 B = 5659.524301 C = 6671.857802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.166 3.834 4 H 0.084 0.916 5 N -1.128 6.128 6 S 2.770 3.230 7 O -0.980 6.980 8 O -0.992 6.992 9 N -0.982 5.982 10 C 0.094 3.906 11 C 0.234 3.766 12 H 0.057 0.943 13 C -0.150 4.150 14 C -0.517 4.517 15 H 0.082 0.918 16 C 0.078 3.922 17 N -0.889 5.889 18 Si 0.868 3.132 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.262 1.262 22 C -0.094 4.094 23 C -0.151 4.151 24 C 0.062 3.938 25 O -0.384 6.384 26 C 0.062 3.938 27 C -0.154 4.154 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.409 0.591 34 H 0.036 0.964 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.030 0.970 39 H 0.054 0.946 40 H 0.266 0.734 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.047 0.953 45 H 0.091 0.909 46 H 0.047 0.953 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.012 -9.578 -17.617 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.058 3.942 4 H 0.102 0.898 5 N -0.885 5.885 6 S 2.780 3.220 7 O -0.963 6.963 8 O -0.975 6.975 9 N -0.824 5.824 10 C -0.053 4.053 11 C 0.131 3.869 12 H 0.075 0.925 13 C -0.210 4.210 14 C -0.557 4.557 15 H 0.100 0.900 16 C -0.126 4.126 17 N -0.526 5.526 18 Si 0.695 3.305 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.114 4.114 23 C -0.189 4.189 24 C -0.015 4.015 25 O -0.303 6.303 26 C -0.015 4.015 27 C -0.192 4.192 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.242 0.758 34 H 0.054 0.946 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.065 0.935 47 H 0.112 0.888 48 H 0.099 0.901 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.889 -9.893 -16.736 21.377 hybrid contribution -1.259 0.806 0.027 1.495 sum -10.148 -9.087 -16.709 21.558 Atomic orbital electron populations 1.21751 0.95805 1.01319 1.01849 1.22100 0.96733 0.96461 1.03190 1.20694 0.97918 0.90848 0.84759 0.89788 1.56338 1.32351 1.69196 1.30587 1.02312 0.73286 0.73288 0.73108 1.93599 1.70222 1.72671 1.59852 1.93529 1.81487 1.38488 1.83972 1.57846 1.24034 1.18736 1.81806 1.21363 0.89125 0.97729 0.97042 1.19136 0.98675 0.74967 0.94132 0.92512 1.22344 0.99890 1.00835 0.97882 1.21138 1.02827 1.15924 1.15798 0.90038 1.24982 0.96569 0.96570 0.94510 1.69890 1.33267 1.27720 1.21751 0.86980 0.85054 0.78811 0.79671 1.19450 1.21195 1.18619 1.21509 1.00891 0.95153 0.93852 1.22291 1.02402 0.99611 0.94643 1.22542 0.98257 0.83012 0.97656 1.87940 1.69430 1.23744 1.49141 1.22596 0.97594 0.95431 0.85873 1.22363 1.03086 0.95531 0.98198 0.92748 0.92566 0.92993 0.90309 0.91015 0.75799 0.94561 0.89657 0.91622 0.93075 0.95145 0.92668 0.92378 0.90287 0.90627 0.90372 0.93508 0.89062 0.93511 0.88771 0.90085 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.46 37.16 0.35 -1.01 16 2 C -0.15 -1.48 5.61 -26.73 -0.15 -1.63 16 3 C 0.17 1.82 2.05 -67.93 -0.14 1.68 16 4 H 0.08 0.97 6.73 -51.93 -0.35 0.62 16 5 N -1.13 -14.88 4.06 -4.89 -0.02 -14.90 16 6 S 2.77 51.67 6.07 -107.50 -0.65 51.02 16 7 O -0.98 -22.17 16.70 -57.17 -0.95 -23.12 16 8 O -0.99 -19.80 15.90 -57.17 -0.91 -20.70 16 9 N -0.98 -19.00 3.12 -115.85 -0.36 -19.36 16 10 C 0.09 1.57 9.05 59.85 0.54 2.11 16 11 C 0.23 5.21 2.21 -69.08 -0.15 5.06 16 12 H 0.06 1.35 3.97 -51.93 -0.21 1.14 16 13 C -0.15 -2.82 9.26 37.16 0.34 -2.48 16 14 C -0.52 -13.85 8.72 -34.44 -0.30 -14.15 16 15 H 0.08 2.33 6.82 -52.49 -0.36 1.97 16 16 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 17 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 18 Si 0.87 21.49 27.21 -169.99 -4.62 16.87 16 19 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.26 -5.99 6.50 56.52 0.37 -5.62 16 22 C -0.09 -0.86 1.67 -90.44 -0.15 -1.01 16 23 C -0.15 -1.20 4.98 -26.59 -0.13 -1.33 16 24 C 0.06 0.51 6.84 37.21 0.25 0.76 16 25 O -0.38 -4.19 10.77 -35.23 -0.38 -4.57 16 26 C 0.06 0.61 6.84 37.20 0.25 0.86 16 27 C -0.15 -1.61 4.27 -26.60 -0.11 -1.73 16 28 H 0.05 0.42 6.34 -51.93 -0.33 0.09 16 29 H 0.06 0.56 7.57 -51.93 -0.39 0.17 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.98 7.56 -51.93 -0.39 0.58 16 32 H 0.07 0.59 6.37 -51.93 -0.33 0.26 16 33 H 0.41 4.68 8.73 -34.47 -0.30 4.38 16 34 H 0.04 0.49 7.47 -51.93 -0.39 0.10 16 35 H 0.08 1.54 6.56 -51.93 -0.34 1.20 16 36 H 0.07 1.06 7.02 -51.93 -0.36 0.70 16 37 H 0.05 0.91 7.48 -51.93 -0.39 0.52 16 38 H 0.03 0.47 5.59 -51.93 -0.29 0.18 16 39 H 0.05 1.09 8.13 -51.93 -0.42 0.67 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.08 0.66 6.43 -51.93 -0.33 0.33 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.51 6.56 -51.93 -0.34 0.17 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.08 0.90 6.71 -51.93 -0.35 0.56 16 49 H 0.08 0.94 7.80 -51.93 -0.41 0.53 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -33.13 375.96 -8.94 -42.07 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.99 Total: 3.51 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 0.51 Total: -10.77 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.39 Total: -59.97 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -2.24 Total: -48.39 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.62 Total: 16.87 kcal Atomic # 16 Polarization: 51.67 SS G_CDS: -0.65 Total: 51.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.13 -8.94 -42.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330423250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.530 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds