Wall clock time and date at job start Tue Mar 31 2020 17:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47091 * 2 1 4 4 H 1.08994 * 109.47218 * 177.29299 * 3 2 1 5 5 N 1.46499 * 109.47080 * 57.29032 * 3 2 1 6 6 S 1.65604 * 119.99735 * 93.88745 * 5 3 2 7 7 O 1.42094 * 106.40328 * 179.88970 * 6 5 3 8 8 O 1.42108 * 106.40028 * 312.81068 * 6 5 3 9 9 N 1.65600 * 107.21981 * 66.34698 * 6 5 3 10 10 C 1.46498 * 120.00247 * 270.00484 * 9 6 5 11 11 C 1.46498 * 119.99671 * 89.99702 * 9 6 5 12 12 H 1.09000 * 109.47552 * 0.02562 * 11 9 6 13 13 C 1.53003 * 109.47523 * 240.00352 * 11 9 6 14 14 C 1.50699 * 109.46936 * 120.00330 * 11 9 6 15 15 H 1.07998 * 119.99971 * 34.23127 * 14 11 9 16 16 C 1.37873 * 120.00176 * 214.23340 * 14 11 9 17 17 N 1.31517 * 120.00319 * 183.60167 * 16 14 11 18 18 Si 1.86803 * 120.00199 * 3.59816 * 16 14 11 19 19 H 1.48503 * 109.47120 * 93.36413 * 18 16 14 20 20 H 1.48500 * 109.47373 * 213.36861 * 18 16 14 21 21 H 1.48498 * 109.46893 * 333.36929 * 18 16 14 22 22 C 1.52998 * 109.46979 * 297.29288 * 3 2 1 23 23 C 1.53174 * 109.54379 * 299.82473 * 22 3 2 24 24 C 1.53108 * 109.15566 * 183.24386 * 23 22 3 25 25 O 1.42898 * 109.48961 * 57.46984 * 24 23 22 26 26 C 1.42902 * 114.09876 * 298.89370 * 25 24 23 27 27 C 1.53088 * 109.41751 * 61.15400 * 26 25 24 28 28 H 1.09006 * 109.47333 * 56.69117 * 1 2 3 29 29 H 1.09000 * 109.47219 * 296.69920 * 1 2 3 30 30 H 1.09002 * 109.47463 * 176.69279 * 1 2 3 31 31 H 1.08991 * 109.47173 * 119.99685 * 2 1 3 32 32 H 1.08997 * 109.47285 * 240.00055 * 2 1 3 33 33 H 0.96994 * 120.00506 * 273.88591 * 5 3 2 34 34 H 1.09001 * 109.47296 * 89.99679 * 10 9 6 35 35 H 1.08998 * 109.46943 * 209.99400 * 10 9 6 36 36 H 1.09004 * 109.46996 * 329.99465 * 10 9 6 37 37 H 1.08999 * 109.46619 * 305.86225 * 13 11 9 38 38 H 1.09003 * 109.46909 * 65.85866 * 13 11 9 39 39 H 1.08995 * 109.47214 * 185.86109 * 13 11 9 40 40 H 0.97002 * 119.99978 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.54342 * 59.99830 * 22 3 2 42 42 H 1.09000 * 109.52512 * 303.05666 * 23 22 3 43 43 H 1.08994 * 109.52799 * 63.24956 * 23 22 3 44 44 H 1.09005 * 109.40540 * 297.48727 * 24 23 22 45 45 H 1.09007 * 109.49105 * 177.51043 * 24 23 22 46 46 H 1.08998 * 109.47716 * 301.16961 * 26 25 24 47 47 H 1.09002 * 109.47965 * 181.14063 * 26 25 24 48 48 H 1.08998 * 109.52287 * 182.48323 * 27 26 25 49 49 H 1.09005 * 109.57214 * 62.33117 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1288 1.4430 0.0485 5 7 1.4991 2.1518 1.1622 6 16 2.3756 2.2318 2.5650 7 8 1.5914 2.9773 3.4861 8 8 2.8368 0.9132 2.8257 9 7 3.7213 3.1442 2.2507 10 6 4.9487 2.5001 1.7765 11 6 3.6844 4.5956 2.4469 12 1 2.6962 4.8895 2.8005 13 6 3.9812 5.2973 1.1201 14 6 4.7206 4.9911 3.4671 15 1 5.6552 4.4529 3.5241 16 6 4.4756 6.0399 4.3277 17 7 5.4069 6.4308 5.1701 18 14 2.8207 6.9060 4.2974 19 1 1.9203 6.2885 5.3040 20 1 3.0085 8.3439 4.6172 21 1 2.2176 6.7739 2.9468 22 6 1.5864 2.1439 -1.2819 23 6 2.1546 1.4062 -2.4981 24 6 1.7632 2.1608 -3.7715 25 8 2.2446 3.5042 -3.6966 26 6 1.7087 4.2561 -2.6059 27 6 2.0998 3.5870 -1.2857 28 1 -0.3634 0.5644 -0.8589 29 1 -0.3634 0.4617 0.9181 30 1 -0.3634 -1.0259 -0.0593 31 1 1.8933 -0.5137 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 0.6276 2.5744 1.1101 34 1 4.9425 2.4639 0.6871 35 1 5.8130 3.0709 2.1161 36 1 5.0038 1.4865 2.1735 37 1 4.9223 4.9253 0.7149 38 1 3.1761 5.0946 0.4138 39 1 4.0567 6.3719 1.2863 40 1 5.2342 7.1685 5.7759 41 1 0.4975 2.1441 -1.3317 42 1 3.2411 1.3615 -2.4222 43 1 1.7491 0.3951 -2.5332 44 1 0.6775 2.1686 -3.8686 45 1 2.2020 1.6651 -4.6375 46 1 0.6224 4.2913 -2.6877 47 1 2.1084 5.2698 -2.6321 48 1 1.6552 4.1340 -0.4543 49 1 3.1850 3.5878 -1.1833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330423250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:20 Heat of formation + Delta-G solvation = -161.782710 kcal Electronic energy + Delta-G solvation = -30220.851276 eV Core-core repulsion = 26308.251980 eV Total energy + Delta-G solvation = -3912.599297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.67200 -38.47324 -38.11346 -37.86267 -36.88542 -34.49384 -33.68272 -32.83798 -31.75006 -31.53272 -27.64458 -27.30460 -26.98175 -25.03561 -24.23308 -22.51259 -21.99452 -20.67599 -20.17166 -19.28490 -18.78975 -18.14611 -17.59569 -16.98829 -16.82980 -16.55600 -16.00269 -15.86160 -15.45810 -15.31121 -15.03064 -14.73070 -14.54616 -14.42007 -14.39801 -14.32946 -13.69429 -13.56191 -13.43944 -13.18830 -13.09170 -13.06836 -12.85527 -12.84276 -12.57836 -12.55376 -12.51442 -12.38186 -12.14065 -12.03805 -11.88279 -11.73709 -11.45227 -11.28655 -11.13957 -11.10690 -10.75112 -10.58028 -10.18379 -9.67159 -8.32124 -6.35106 -0.34375 1.28887 1.39061 1.41841 2.02820 2.31680 2.62384 3.08137 3.08687 3.41765 3.59765 3.79446 3.91533 4.06903 4.14444 4.17864 4.29113 4.33430 4.45408 4.47738 4.51328 4.54229 4.65629 4.70338 4.78136 4.83937 4.84775 4.90563 4.91626 4.93343 5.00787 5.05175 5.12953 5.17252 5.21819 5.23812 5.30004 5.36276 5.40234 5.49174 5.51558 5.60180 5.61165 5.92730 6.19298 6.34812 6.38670 6.71631 7.30336 8.83833 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013769 B = 0.004946 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.007780 B = 5659.524301 C = 6671.857802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.145 4.145 3 C 0.159 3.841 4 H 0.080 0.920 5 N -1.108 6.108 6 S 2.787 3.213 7 O -1.022 7.022 8 O -1.007 7.007 9 N -0.991 5.991 10 C 0.092 3.908 11 C 0.238 3.762 12 H 0.046 0.954 13 C -0.143 4.143 14 C -0.517 4.517 15 H 0.050 0.950 16 C 0.021 3.979 17 N -0.939 5.939 18 Si 0.913 3.087 19 H -0.285 1.285 20 H -0.277 1.277 21 H -0.229 1.229 22 C -0.086 4.086 23 C -0.147 4.147 24 C 0.057 3.943 25 O -0.406 6.406 26 C 0.062 3.938 27 C -0.157 4.157 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.421 0.579 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.266 0.734 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.103 0.897 46 H 0.060 0.940 47 H 0.092 0.908 48 H 0.074 0.926 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.093 -10.514 -20.913 25.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C 0.052 3.948 4 H 0.098 0.902 5 N -0.870 5.870 6 S 2.797 3.203 7 O -1.006 7.006 8 O -0.990 6.990 9 N -0.832 5.832 10 C -0.054 4.054 11 C 0.133 3.867 12 H 0.064 0.936 13 C -0.202 4.202 14 C -0.557 4.557 15 H 0.068 0.932 16 C -0.178 4.178 17 N -0.579 5.579 18 Si 0.737 3.263 19 H -0.211 1.211 20 H -0.202 1.202 21 H -0.152 1.152 22 C -0.106 4.106 23 C -0.185 4.185 24 C -0.019 4.019 25 O -0.325 6.325 26 C -0.014 4.014 27 C -0.195 4.195 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.257 0.743 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.121 0.879 46 H 0.078 0.922 47 H 0.110 0.890 48 H 0.092 0.908 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.963 -10.831 -20.055 25.292 hybrid contribution -0.580 0.912 0.972 1.453 sum -11.543 -9.919 -19.083 24.409 Atomic orbital electron populations 1.21774 0.94833 1.02172 1.02038 1.22093 0.97603 0.95501 1.03167 1.20977 0.97840 0.91508 0.84477 0.90199 1.55818 1.32112 1.69307 1.29784 1.01489 0.72858 0.72487 0.73490 1.93539 1.71119 1.73524 1.62388 1.93511 1.81922 1.38935 1.84679 1.57596 1.25540 1.17679 1.82406 1.21485 0.87393 0.97129 0.99347 1.18955 0.96405 0.76681 0.94625 0.93584 1.22207 1.01718 0.99706 0.96572 1.21481 1.02848 1.14957 1.16420 0.93213 1.25727 0.99625 0.97791 0.94619 1.70017 1.35356 1.29069 1.23507 0.86240 0.81105 0.78039 0.80875 1.21088 1.20248 1.15172 1.21465 1.01797 0.94226 0.93091 1.22281 1.02061 1.00407 0.93754 1.22726 0.99164 0.81871 0.98136 1.87917 1.70064 1.25101 1.49417 1.22603 0.98335 0.95238 0.85264 1.22357 1.02262 0.96436 0.98405 0.90779 0.93915 0.92160 0.92903 0.88520 0.74294 0.90721 0.91653 0.91328 0.92284 0.91584 0.93551 0.92458 0.88743 0.91284 0.88391 0.92223 0.87863 0.92185 0.89007 0.90760 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.46 71.98 0.68 -1.55 16 2 C -0.14 -2.50 5.61 30.60 0.17 -2.32 16 3 C 0.16 3.01 2.05 44.99 0.09 3.10 16 4 H 0.08 1.61 6.73 -2.39 -0.02 1.60 16 5 N -1.11 -26.76 4.06 -169.39 -0.69 -27.45 16 6 S 2.79 101.68 6.07 -56.49 -0.34 101.33 16 7 O -1.02 -46.01 16.70 -128.00 -2.14 -48.15 16 8 O -1.01 -39.68 15.90 -128.00 -2.04 -41.71 16 9 N -0.99 -37.65 3.12 -520.45 -1.62 -39.27 16 10 C 0.09 3.01 9.05 127.77 1.16 4.17 16 11 C 0.24 10.44 2.21 44.25 0.10 10.54 16 12 H 0.05 2.14 3.97 -2.39 -0.01 2.13 16 13 C -0.14 -5.10 9.26 71.98 0.67 -4.43 16 14 C -0.52 -28.38 8.72 25.60 0.22 -28.15 16 15 H 0.05 2.98 6.82 -2.91 -0.02 2.96 16 16 C 0.02 1.23 5.47 84.65 0.46 1.69 16 17 N -0.94 -58.11 13.96 21.45 0.30 -57.81 16 18 Si 0.91 44.36 27.21 68.60 1.87 46.22 16 19 H -0.28 -14.46 7.11 99.48 0.71 -13.76 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.23 -9.79 6.50 99.48 0.65 -9.15 16 22 C -0.09 -1.24 1.67 -10.68 -0.02 -1.26 16 23 C -0.15 -1.73 4.98 30.69 0.15 -1.57 16 24 C 0.06 0.71 6.84 72.02 0.49 1.21 16 25 O -0.41 -7.61 10.77 -148.98 -1.60 -9.21 16 26 C 0.06 1.03 6.84 72.01 0.49 1.52 16 27 C -0.16 -2.77 4.27 30.68 0.13 -2.64 16 28 H 0.07 0.81 6.34 -2.38 -0.02 0.79 16 29 H 0.04 0.75 7.57 -2.39 -0.02 0.73 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 1.21 7.56 -2.39 -0.02 1.19 16 32 H 0.10 1.19 6.37 -2.39 -0.02 1.18 16 33 H 0.42 8.51 8.73 -96.75 -0.84 7.67 16 34 H 0.07 1.86 7.47 -2.39 -0.02 1.84 16 35 H 0.06 2.40 6.56 -2.39 -0.02 2.38 16 36 H 0.07 2.19 7.02 -2.39 -0.02 2.17 16 37 H 0.06 2.00 7.48 -2.39 -0.02 1.98 16 38 H 0.07 1.88 5.59 -2.39 -0.01 1.87 16 39 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 40 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.09 1.12 6.43 -2.39 -0.02 1.11 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.10 0.79 6.56 -2.39 -0.02 0.77 16 44 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 45 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.07 1.40 6.71 -2.39 -0.02 1.39 16 49 H 0.07 1.37 7.80 -2.38 -0.02 1.35 16 Total: -1.00 -74.28 375.96 -1.41 -75.69 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.05 Total: 20.06 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 4.80 Total: -19.71 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -2.01 Total: -124.53 kcal Atomic # 8 Polarization: -93.29 SS G_CDS: -5.78 Total: -99.07 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.87 Total: 46.22 kcal Atomic # 16 Polarization: 101.68 SS G_CDS: -0.34 Total: 101.33 kcal Total: -74.28 -1.41 -75.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330423250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.092 kcal (2) G-P(sol) polarization free energy of solvation -74.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds