Wall clock time and date at job start Tue Mar 31 2020 17:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 120.00130 * 2 1 4 4 C 1.53002 * 109.46871 * 274.99901 * 3 2 1 5 5 N 1.46908 * 109.46707 * 179.97438 * 4 3 2 6 6 C 1.47024 * 110.99261 * 46.32476 * 5 4 3 7 7 C 1.53103 * 109.24985 * 182.34870 * 6 5 4 8 8 O 1.43012 * 109.29295 * 303.21723 * 7 6 5 9 9 C 1.43011 * 113.74271 * 58.65008 * 8 7 6 10 10 C 1.47018 * 110.99661 * 170.00016 * 5 4 3 11 11 S 1.65603 * 120.00147 * 180.02562 * 2 1 3 12 12 O 1.42096 * 104.27486 * 26.06763 * 11 2 1 13 13 O 1.42097 * 104.28126 * 153.92932 * 11 2 1 14 14 C 1.81402 * 104.44689 * 270.00032 * 11 2 1 15 15 C 1.52992 * 109.47156 * 179.97438 * 14 11 2 16 16 C 1.53001 * 109.47057 * 299.99718 * 15 14 11 17 17 C 1.52997 * 109.47381 * 59.99700 * 15 14 11 18 18 C 1.50699 * 109.47497 * 180.02562 * 15 14 11 19 19 H 1.08002 * 119.99807 * 359.97438 * 18 15 14 20 20 C 1.37869 * 120.00545 * 180.02562 * 18 15 14 21 21 N 1.31523 * 120.00282 * 359.97438 * 20 18 15 22 22 Si 1.86807 * 120.00336 * 179.97438 * 20 18 15 23 23 H 1.48507 * 109.46709 * 90.00016 * 22 20 18 24 24 H 1.48502 * 109.47284 * 209.99729 * 22 20 18 25 25 H 1.48497 * 109.46981 * 330.00295 * 22 20 18 26 26 H 1.08999 * 109.47269 * 89.99615 * 1 2 3 27 27 H 1.08996 * 109.47337 * 210.00126 * 1 2 3 28 28 H 1.09002 * 109.46870 * 330.00043 * 1 2 3 29 29 H 1.09002 * 109.46696 * 155.00020 * 3 2 1 30 30 H 1.08999 * 109.46956 * 34.99866 * 3 2 1 31 31 H 1.09003 * 109.46906 * 60.00255 * 4 3 2 32 32 H 1.08999 * 109.47302 * 299.99754 * 4 3 2 33 33 H 1.08998 * 109.47369 * 62.43595 * 6 5 4 34 34 H 1.08998 * 109.54483 * 302.29802 * 6 5 4 35 35 H 1.09002 * 109.50635 * 183.25881 * 7 6 5 36 36 H 1.09003 * 109.50698 * 63.17493 * 7 6 5 37 37 H 1.08997 * 109.50806 * 61.26171 * 9 8 7 38 38 H 1.08997 * 109.50924 * 181.35636 * 9 8 7 39 39 H 1.08994 * 109.50209 * 57.67478 * 10 5 4 40 40 H 1.08997 * 109.50514 * 297.54292 * 10 5 4 41 41 H 1.09004 * 109.46865 * 299.99846 * 14 11 2 42 42 H 1.09000 * 109.47450 * 59.99416 * 14 11 2 43 43 H 1.09000 * 109.47147 * 60.00611 * 16 15 14 44 44 H 1.09003 * 109.47145 * 180.02562 * 16 15 14 45 45 H 1.08995 * 109.47328 * 299.99902 * 16 15 14 46 46 H 1.09004 * 109.46855 * 59.99843 * 17 15 14 47 47 H 1.08999 * 109.47634 * 180.02562 * 17 15 14 48 48 H 1.08996 * 109.47280 * 300.00251 * 17 15 14 49 49 H 0.96990 * 120.00608 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3436 1.7732 -1.4370 5 7 3.0777 3.0458 -1.4370 6 6 4.2690 2.9666 -0.5790 7 6 4.9698 4.3277 -0.5615 8 8 5.2909 4.7111 -1.9013 9 6 4.1533 4.7989 -2.7635 10 6 3.4447 3.4423 -2.8042 11 16 2.2930 -1.4341 -0.0006 12 8 1.3969 -2.3558 -0.6062 13 8 3.5395 -1.1189 -0.6057 14 6 2.5193 -1.8269 1.7558 15 6 3.2808 -3.1471 1.8893 16 6 2.4839 -4.2658 1.2151 17 6 4.6482 -3.0175 1.2153 18 6 3.4683 -3.4737 3.3484 19 1 3.0831 -2.8061 4.1050 20 6 4.1323 -4.6242 3.7176 21 7 4.6018 -5.4370 2.7964 22 14 4.3653 -5.0287 5.5264 23 1 3.2144 -5.8359 6.0053 24 1 5.6203 -5.8027 5.7030 25 1 4.4462 -3.7691 6.3088 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 3.1858 1.1176 0.4343 30 1 1.6501 2.0043 0.5894 31 1 1.3553 1.9243 -1.8713 32 1 2.8910 1.0377 -2.0265 33 1 4.9500 2.2116 -0.9716 34 1 3.9712 2.6975 0.4344 35 1 5.8849 4.2584 0.0266 36 1 4.3081 5.0721 -0.1185 37 1 3.4673 5.5565 -2.3849 38 1 4.4779 5.0709 -3.7678 39 1 2.5450 3.5197 -3.4146 40 1 4.1130 2.6954 -3.2328 41 1 3.0866 -1.0296 2.2362 42 1 1.5451 -1.9196 2.2359 43 1 2.3480 -4.0299 0.1597 44 1 3.0263 -5.2065 1.3106 45 1 1.5098 -4.3582 1.6952 46 1 5.2159 -2.2205 1.6956 47 1 5.1906 -3.9582 1.3100 48 1 4.5123 -2.7816 0.1599 49 1 5.0692 -6.2462 3.0560 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331314572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:10 Heat of formation + Delta-G solvation = -102.292415 kcal Electronic energy + Delta-G solvation = -28908.661342 eV Core-core repulsion = 24998.641738 eV Total energy + Delta-G solvation = -3910.019604 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.81183 -37.20929 -36.62376 -36.30900 -35.39137 -35.12883 -31.69485 -31.48462 -29.96968 -27.18977 -26.72710 -25.75615 -25.27447 -25.01477 -24.26782 -22.13084 -20.48103 -19.50468 -18.39481 -17.49796 -16.88393 -16.33667 -16.05579 -15.96166 -15.50285 -15.33231 -15.20337 -14.97515 -14.77557 -14.52201 -13.93917 -13.60372 -13.49189 -13.08328 -13.04136 -12.61020 -12.55733 -12.52715 -12.35082 -12.10674 -11.64879 -11.59411 -11.48476 -11.40792 -11.14764 -11.09486 -11.00796 -10.96588 -10.73962 -10.69642 -10.40582 -10.31406 -10.14454 -9.90503 -9.69279 -9.62347 -9.00733 -8.67479 -8.58778 -8.43278 -6.06454 -4.18814 0.76320 2.97727 3.23557 3.30998 3.32850 3.56622 3.71224 4.29004 4.36639 4.57848 4.62646 4.64903 4.77964 4.79151 4.94600 5.05785 5.13140 5.14749 5.18743 5.29240 5.36621 5.42134 5.49053 5.53514 5.58509 5.62206 5.67114 5.68038 5.75264 5.80833 5.88608 6.06817 6.33500 6.51717 6.66280 6.70692 6.75564 6.78826 6.86666 6.91857 7.00319 7.27401 7.46393 7.64613 7.94291 8.05974 8.29448 8.79766 9.46877 10.94876 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017202 B = 0.003165 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.356696 B = 8845.373852 C = 9658.362994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.013 6.013 3 C 0.124 3.876 4 C 0.034 3.966 5 N -0.534 5.534 6 C 0.003 3.997 7 C 0.065 3.935 8 O -0.387 6.387 9 C 0.065 3.935 10 C 0.016 3.984 11 S 2.590 3.410 12 O -0.960 6.960 13 O -0.961 6.961 14 C -0.581 4.581 15 C 0.082 3.918 16 C -0.164 4.164 17 C -0.163 4.163 18 C -0.503 4.503 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.027 0.973 44 H 0.095 0.905 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.095 0.905 48 H 0.027 0.973 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.226 18.040 -7.020 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.849 5.849 3 C -0.002 4.002 4 C -0.095 4.095 5 N -0.260 5.260 6 C -0.125 4.125 7 C -0.012 4.012 8 O -0.305 6.305 9 C -0.012 4.012 10 C -0.113 4.113 11 S 2.689 3.311 12 O -0.951 6.951 13 O -0.951 6.951 14 C -0.715 4.715 15 C 0.080 3.920 16 C -0.222 4.222 17 C -0.220 4.220 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.522 5.522 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.046 0.954 44 H 0.114 0.886 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.114 0.886 48 H 0.046 0.954 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.019 17.833 -7.718 20.069 hybrid contribution 0.148 -0.806 1.433 1.651 sum -4.872 17.027 -6.285 18.793 Atomic orbital electron populations 1.21420 0.78745 1.02852 1.01968 1.57776 1.15076 1.21519 1.90507 1.21335 0.96942 0.85570 0.96373 1.22617 0.99033 0.89594 0.98238 1.62317 1.22667 1.30893 1.10076 1.22980 0.91949 0.98342 0.99189 1.22692 1.00184 0.94525 0.83844 1.87987 1.32028 1.89420 1.21084 1.22640 0.88037 0.95627 0.94874 1.22805 1.00342 0.97796 0.90347 1.05887 0.73609 0.72174 0.79459 1.93540 1.65025 1.61230 1.75257 1.93535 1.43482 1.82800 1.75291 1.30559 1.09889 1.10241 1.20785 1.17932 0.90788 0.85405 0.97898 1.22280 0.99546 1.03873 0.96461 1.22265 0.99522 1.03813 0.96448 1.20942 1.36592 1.06817 0.89898 0.92298 1.24943 0.95160 0.96027 0.97598 1.69798 1.37524 1.12639 1.32197 0.86531 0.77667 0.78447 0.84971 1.20621 1.21092 1.19929 0.92780 0.90931 0.91242 0.89884 0.89735 0.90169 0.93232 0.92832 0.88923 0.88296 0.92311 0.92341 0.88555 0.89648 0.93530 0.86510 0.86431 0.95420 0.88603 0.94470 0.94510 0.88637 0.95407 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.06 10.24 59.84 0.61 1.68 16 2 N -1.01 -13.91 3.12 -121.76 -0.38 -14.29 16 3 C 0.12 1.48 4.54 -4.04 -0.02 1.46 16 4 C 0.03 0.41 5.60 -3.82 -0.02 0.39 16 5 N -0.53 -5.81 4.88 -234.29 -1.14 -6.95 16 6 C 0.00 0.04 4.94 -3.70 -0.02 0.02 16 7 C 0.06 0.62 7.01 37.21 0.26 0.88 16 8 O -0.39 -4.33 10.83 -35.23 -0.38 -4.71 16 9 C 0.07 0.58 7.01 37.21 0.26 0.84 16 10 C 0.02 0.15 5.63 -3.71 -0.02 0.13 16 11 S 2.59 47.71 4.36 -107.50 -0.47 47.25 16 12 O -0.96 -20.02 14.71 -57.54 -0.85 -20.87 16 13 O -0.96 -19.65 14.37 -57.54 -0.83 -20.47 16 14 C -0.58 -11.23 5.12 37.15 0.19 -11.04 16 15 C 0.08 1.98 0.52 -155.67 -0.08 1.89 16 16 C -0.16 -4.03 7.77 37.16 0.29 -3.74 16 17 C -0.16 -3.98 7.78 37.16 0.29 -3.69 16 18 C -0.50 -13.13 8.01 -34.44 -0.28 -13.40 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 21 N -0.88 -24.02 9.35 55.43 0.52 -23.50 16 22 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.81 7.79 -51.93 -0.40 0.41 16 28 H 0.07 0.57 7.94 -51.93 -0.41 0.16 16 29 H 0.08 1.03 5.74 -51.93 -0.30 0.73 16 30 H 0.08 0.81 7.96 -51.93 -0.41 0.40 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.71 7.84 -51.93 -0.41 0.30 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.90 6.05 -51.93 -0.31 0.58 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 42 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 43 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 44 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 48 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 49 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 380.07 15.07 5.73 5.73 Total: -1.00 -31.84 380.07 -9.93 -41.76 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -8.49 Total: 3.54 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 1.38 Total: -22.96 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: -1.00 Total: -44.73 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -2.05 Total: -46.05 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 47.71 SS G_CDS: -0.47 Total: 47.25 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.84 -9.93 -41.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331314572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.528 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds