Wall clock time and date at job start Tue Mar 31 2020 17:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 120.00130 * 2 1 4 4 C 1.53002 * 109.46871 * 274.99901 * 3 2 1 5 5 N 1.46908 * 109.46707 * 179.97438 * 4 3 2 6 6 C 1.47024 * 110.99261 * 46.32476 * 5 4 3 7 7 C 1.53103 * 109.24985 * 182.34870 * 6 5 4 8 8 O 1.43012 * 109.29295 * 303.21723 * 7 6 5 9 9 C 1.43011 * 113.74271 * 58.65008 * 8 7 6 10 10 C 1.47018 * 110.99661 * 170.00016 * 5 4 3 11 11 S 1.65603 * 120.00147 * 180.02562 * 2 1 3 12 12 O 1.42096 * 104.27486 * 26.06763 * 11 2 1 13 13 O 1.42097 * 104.28126 * 153.92932 * 11 2 1 14 14 C 1.81402 * 104.44689 * 270.00032 * 11 2 1 15 15 C 1.52992 * 109.47156 * 179.97438 * 14 11 2 16 16 C 1.53001 * 109.47057 * 299.99718 * 15 14 11 17 17 C 1.52997 * 109.47381 * 59.99700 * 15 14 11 18 18 C 1.50699 * 109.47497 * 180.02562 * 15 14 11 19 19 H 1.08002 * 119.99807 * 359.97438 * 18 15 14 20 20 C 1.37869 * 120.00545 * 180.02562 * 18 15 14 21 21 N 1.31523 * 120.00282 * 359.97438 * 20 18 15 22 22 Si 1.86807 * 120.00336 * 179.97438 * 20 18 15 23 23 H 1.48507 * 109.46709 * 90.00016 * 22 20 18 24 24 H 1.48502 * 109.47284 * 209.99729 * 22 20 18 25 25 H 1.48497 * 109.46981 * 330.00295 * 22 20 18 26 26 H 1.08999 * 109.47269 * 89.99615 * 1 2 3 27 27 H 1.08996 * 109.47337 * 210.00126 * 1 2 3 28 28 H 1.09002 * 109.46870 * 330.00043 * 1 2 3 29 29 H 1.09002 * 109.46696 * 155.00020 * 3 2 1 30 30 H 1.08999 * 109.46956 * 34.99866 * 3 2 1 31 31 H 1.09003 * 109.46906 * 60.00255 * 4 3 2 32 32 H 1.08999 * 109.47302 * 299.99754 * 4 3 2 33 33 H 1.08998 * 109.47369 * 62.43595 * 6 5 4 34 34 H 1.08998 * 109.54483 * 302.29802 * 6 5 4 35 35 H 1.09002 * 109.50635 * 183.25881 * 7 6 5 36 36 H 1.09003 * 109.50698 * 63.17493 * 7 6 5 37 37 H 1.08997 * 109.50806 * 61.26171 * 9 8 7 38 38 H 1.08997 * 109.50924 * 181.35636 * 9 8 7 39 39 H 1.08994 * 109.50209 * 57.67478 * 10 5 4 40 40 H 1.08997 * 109.50514 * 297.54292 * 10 5 4 41 41 H 1.09004 * 109.46865 * 299.99846 * 14 11 2 42 42 H 1.09000 * 109.47450 * 59.99416 * 14 11 2 43 43 H 1.09000 * 109.47147 * 60.00611 * 16 15 14 44 44 H 1.09003 * 109.47145 * 180.02562 * 16 15 14 45 45 H 1.08995 * 109.47328 * 299.99902 * 16 15 14 46 46 H 1.09004 * 109.46855 * 59.99843 * 17 15 14 47 47 H 1.08999 * 109.47634 * 180.02562 * 17 15 14 48 48 H 1.08996 * 109.47280 * 300.00251 * 17 15 14 49 49 H 0.96990 * 120.00608 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3436 1.7732 -1.4370 5 7 3.0777 3.0458 -1.4370 6 6 4.2690 2.9666 -0.5790 7 6 4.9698 4.3277 -0.5615 8 8 5.2909 4.7111 -1.9013 9 6 4.1533 4.7989 -2.7635 10 6 3.4447 3.4423 -2.8042 11 16 2.2930 -1.4341 -0.0006 12 8 1.3969 -2.3558 -0.6062 13 8 3.5395 -1.1189 -0.6057 14 6 2.5193 -1.8269 1.7558 15 6 3.2808 -3.1471 1.8893 16 6 2.4839 -4.2658 1.2151 17 6 4.6482 -3.0175 1.2153 18 6 3.4683 -3.4737 3.3484 19 1 3.0831 -2.8061 4.1050 20 6 4.1323 -4.6242 3.7176 21 7 4.6018 -5.4370 2.7964 22 14 4.3653 -5.0287 5.5264 23 1 3.2144 -5.8359 6.0053 24 1 5.6203 -5.8027 5.7030 25 1 4.4462 -3.7691 6.3088 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 3.1858 1.1176 0.4343 30 1 1.6501 2.0043 0.5894 31 1 1.3553 1.9243 -1.8713 32 1 2.8910 1.0377 -2.0265 33 1 4.9500 2.2116 -0.9716 34 1 3.9712 2.6975 0.4344 35 1 5.8849 4.2584 0.0266 36 1 4.3081 5.0721 -0.1185 37 1 3.4673 5.5565 -2.3849 38 1 4.4779 5.0709 -3.7678 39 1 2.5450 3.5197 -3.4146 40 1 4.1130 2.6954 -3.2328 41 1 3.0866 -1.0296 2.2362 42 1 1.5451 -1.9196 2.2359 43 1 2.3480 -4.0299 0.1597 44 1 3.0263 -5.2065 1.3106 45 1 1.5098 -4.3582 1.6952 46 1 5.2159 -2.2205 1.6956 47 1 5.1906 -3.9582 1.3100 48 1 4.5123 -2.7816 0.1599 49 1 5.0692 -6.2462 3.0560 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331314572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:09 Heat of formation + Delta-G solvation = -125.602984 kcal Electronic energy + Delta-G solvation = -28909.672164 eV Core-core repulsion = 24998.641738 eV Total energy + Delta-G solvation = -3911.030426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.61474 -38.30906 -38.17273 -37.98773 -36.89751 -36.11782 -33.64989 -32.24157 -30.86642 -28.44377 -27.97693 -27.72730 -27.27374 -25.98785 -25.05173 -23.05509 -21.33919 -21.30888 -19.73664 -18.86165 -17.93347 -17.78382 -17.26697 -17.03688 -16.92236 -16.67924 -16.16362 -16.07505 -15.95544 -15.57941 -15.14959 -14.85280 -14.65032 -14.46174 -14.43307 -14.39446 -13.88243 -13.68747 -13.36623 -13.20850 -13.11526 -13.03554 -12.89631 -12.79604 -12.56265 -12.46093 -12.36135 -12.31844 -12.19728 -12.13872 -11.98297 -11.89172 -11.59834 -11.48102 -11.39762 -10.70663 -10.64300 -10.43525 -9.98895 -9.49577 -8.04757 -6.23927 -0.68421 1.43342 1.45160 1.53870 1.73612 2.43029 2.71396 2.87064 2.98438 3.16796 3.22513 3.66262 3.79745 3.94971 3.99539 4.03315 4.12063 4.18354 4.21842 4.33791 4.36039 4.44865 4.56505 4.57806 4.67141 4.72894 4.74233 4.82325 4.83085 4.83249 4.87860 4.92065 4.95564 4.99366 5.01583 5.04620 5.11862 5.35415 5.45968 5.56262 5.62547 5.86691 5.88222 5.94029 6.08714 6.19688 6.31667 6.81079 7.44778 8.95139 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017202 B = 0.003165 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.356696 B = 8845.373852 C = 9658.362994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.003 6.003 3 C 0.119 3.881 4 C 0.036 3.964 5 N -0.527 5.527 6 C 0.000 4.000 7 C 0.065 3.935 8 O -0.409 6.409 9 C 0.065 3.935 10 C 0.012 3.988 11 S 2.605 3.395 12 O -0.988 6.988 13 O -0.987 6.987 14 C -0.585 4.585 15 C 0.069 3.931 16 C -0.160 4.160 17 C -0.158 4.158 18 C -0.518 4.518 19 H 0.064 0.936 20 C 0.017 3.983 21 N -0.909 5.909 22 Si 0.955 3.045 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.266 1.266 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.017 0.983 33 H 0.024 0.976 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.025 0.975 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.030 0.970 44 H 0.071 0.929 45 H 0.041 0.959 46 H 0.040 0.960 47 H 0.070 0.930 48 H 0.030 0.970 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.712 20.550 -6.023 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.841 5.841 3 C -0.007 4.007 4 C -0.093 4.093 5 N -0.252 5.252 6 C -0.128 4.128 7 C -0.012 4.012 8 O -0.328 6.328 9 C -0.012 4.012 10 C -0.116 4.116 11 S 2.703 3.297 12 O -0.978 6.978 13 O -0.977 6.977 14 C -0.718 4.718 15 C 0.067 3.933 16 C -0.218 4.218 17 C -0.216 4.216 18 C -0.557 4.557 19 H 0.082 0.918 20 C -0.182 4.182 21 N -0.547 5.547 22 Si 0.781 3.219 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.190 1.190 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.126 0.874 29 H 0.094 0.906 30 H 0.138 0.862 31 H 0.114 0.886 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.043 0.957 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.049 0.951 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.089 0.911 48 H 0.049 0.951 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.506 20.343 -6.716 22.389 hybrid contribution 0.575 -1.529 1.057 1.946 sum -5.931 18.814 -5.658 20.522 Atomic orbital electron populations 1.21753 0.76660 1.04666 1.03006 1.57369 1.16211 1.20423 1.90125 1.21574 0.97092 0.85187 0.96824 1.22594 0.99453 0.89335 0.97941 1.62406 1.22441 1.29774 1.10596 1.23055 0.91625 0.98500 0.99657 1.22789 1.00907 0.93936 0.83552 1.87958 1.33459 1.89457 1.21957 1.22792 0.87682 0.95129 0.95571 1.22913 1.00876 0.97855 0.89986 1.05112 0.73041 0.72840 0.78686 1.93495 1.65543 1.63179 1.75624 1.93498 1.45227 1.83404 1.75608 1.30488 1.10514 1.08262 1.22486 1.17916 0.90870 0.87599 0.96876 1.22211 0.99469 1.03194 0.96913 1.22186 0.99999 1.02504 0.96891 1.21305 1.36388 1.06944 0.91112 0.91756 1.25697 0.95125 0.96137 1.01263 1.69946 1.38066 1.12887 1.33847 0.85603 0.77328 0.78357 0.80625 1.20334 1.21304 1.18998 0.92250 0.91150 0.87438 0.90599 0.86177 0.88610 0.96499 0.95740 0.87678 0.87323 0.90754 0.90997 0.86895 0.87846 0.95655 0.84658 0.84554 0.95095 0.91064 0.94021 0.94105 0.91142 0.95090 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.59 10.24 127.77 1.31 2.90 16 2 N -1.00 -25.29 3.12 -539.12 -1.68 -26.97 16 3 C 0.12 2.53 4.54 86.38 0.39 2.92 16 4 C 0.04 0.81 5.60 86.30 0.48 1.29 16 5 N -0.53 -10.58 4.88 -895.15 -4.36 -14.94 16 6 C 0.00 0.00 4.94 86.31 0.43 0.42 16 7 C 0.06 1.14 7.01 72.02 0.50 1.64 16 8 O -0.41 -8.66 10.83 -148.98 -1.61 -10.27 16 9 C 0.06 1.03 7.01 72.02 0.50 1.53 16 10 C 0.01 0.22 5.63 86.31 0.49 0.71 16 11 S 2.61 94.16 4.36 -56.49 -0.25 93.92 16 12 O -0.99 -40.90 14.71 -127.65 -1.88 -42.78 16 13 O -0.99 -40.68 14.37 -127.65 -1.83 -42.52 16 14 C -0.59 -21.85 5.12 71.98 0.37 -21.48 16 15 C 0.07 3.34 0.52 -52.93 -0.03 3.31 16 16 C -0.16 -7.98 7.77 71.98 0.56 -7.42 16 17 C -0.16 -7.86 7.78 71.98 0.56 -7.30 16 18 C -0.52 -26.82 8.01 25.60 0.21 -26.62 16 19 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 20 C 0.02 0.91 5.15 84.65 0.44 1.34 16 21 N -0.91 -50.37 9.35 21.45 0.20 -50.17 16 22 Si 0.95 41.81 29.54 68.60 2.03 43.84 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.39 7.79 -2.39 -0.02 1.38 16 28 H 0.11 1.26 7.94 -2.39 -0.02 1.24 16 29 H 0.08 1.75 5.74 -2.39 -0.01 1.74 16 30 H 0.12 1.76 7.96 -2.39 -0.02 1.75 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.02 0.48 7.84 -2.39 -0.02 0.46 16 33 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.11 1.86 6.05 -2.39 -0.01 1.84 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 42 H 0.14 4.51 8.14 -2.39 -0.02 4.49 16 43 H 0.03 1.47 5.46 -2.39 -0.01 1.46 16 44 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 45 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 47 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 48 H 0.03 1.47 5.46 -2.39 -0.01 1.46 16 49 H 0.26 13.88 8.31 -92.72 -0.77 13.11 16 Total: -1.00 -69.38 380.07 -2.26 -71.64 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.92 Total: 25.01 kcal Atomic # 6 Polarization: -52.95 SS G_CDS: 6.21 Total: -46.74 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -5.84 Total: -92.09 kcal Atomic # 8 Polarization: -90.24 SS G_CDS: -5.32 Total: -95.57 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 94.16 SS G_CDS: -0.25 Total: 93.92 kcal Total: -69.38 -2.26 -71.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331314572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.961 kcal (2) G-P(sol) polarization free energy of solvation -69.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds