Wall clock time and date at job start Tue Mar 31 2020 17:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 111.00216 * 2 1 4 4 C 1.46898 * 111.00048 * 123.95514 * 2 1 3 5 5 C 1.53003 * 109.47040 * 169.99679 * 4 2 1 6 6 H 1.09004 * 109.51195 * 60.10543 * 5 4 2 7 7 C 1.53718 * 109.48338 * 180.36028 * 5 4 2 8 8 N 1.47147 * 108.15954 * 172.40023 * 7 5 4 9 9 S 1.65608 * 120.98143 * 129.43463 * 8 7 5 10 10 O 1.42105 * 104.27567 * 25.78806 * 9 8 7 11 11 O 1.42099 * 104.27801 * 153.64775 * 9 8 7 12 12 C 1.81397 * 104.44917 * 269.71846 * 9 8 7 13 13 C 1.53002 * 109.47293 * 179.97438 * 12 9 8 14 14 C 1.52995 * 109.47225 * 300.00230 * 13 12 9 15 15 C 1.53003 * 109.46839 * 59.99943 * 13 12 9 16 16 C 1.50702 * 109.47210 * 179.97438 * 13 12 9 17 17 H 1.07998 * 120.00272 * 0.02562 * 16 13 12 18 18 C 1.37882 * 119.99776 * 179.97438 * 16 13 12 19 19 N 1.31509 * 119.99723 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 119.99713 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47194 * 90.00551 * 20 18 16 22 22 H 1.48504 * 109.46916 * 209.99963 * 20 18 16 23 23 H 1.48499 * 109.47410 * 329.99959 * 20 18 16 24 24 C 1.47145 * 118.03962 * 309.16005 * 8 7 5 25 25 C 1.53300 * 108.38555 * 50.78928 * 24 8 7 26 26 O 1.42958 * 109.51553 * 300.00210 * 5 4 2 27 27 H 1.08998 * 109.46611 * 296.04803 * 1 2 3 28 28 H 1.09006 * 109.46714 * 56.04681 * 1 2 3 29 29 H 1.09002 * 109.46937 * 176.04380 * 1 2 3 30 30 H 1.08996 * 109.47396 * 183.95562 * 3 2 1 31 31 H 1.09008 * 109.46898 * 303.95326 * 3 2 1 32 32 H 1.08998 * 109.46862 * 63.95240 * 3 2 1 33 33 H 1.09000 * 109.47149 * 49.99999 * 4 2 1 34 34 H 1.09000 * 109.46979 * 290.00026 * 4 2 1 35 35 H 1.08996 * 109.83595 * 52.72431 * 7 5 4 36 36 H 1.09001 * 109.74544 * 292.02721 * 7 5 4 37 37 H 1.09001 * 109.47492 * 299.99928 * 12 9 8 38 38 H 1.09001 * 109.47146 * 59.99771 * 12 9 8 39 39 H 1.09003 * 109.47406 * 59.99684 * 14 13 12 40 40 H 1.08998 * 109.47432 * 179.97438 * 14 13 12 41 41 H 1.09001 * 109.46960 * 299.99735 * 14 13 12 42 42 H 1.08996 * 109.47146 * 60.00068 * 15 13 12 43 43 H 1.08998 * 109.47039 * 180.02562 * 15 13 12 44 44 H 1.09006 * 109.46851 * 300.00362 * 15 13 12 45 45 H 0.97001 * 119.99602 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.68838 * 170.51000 * 24 8 7 47 47 H 1.08998 * 109.68404 * 291.02799 * 24 8 7 48 48 H 1.08999 * 109.51464 * 67.61937 * 25 24 8 49 49 H 1.08995 * 109.51381 * 187.77876 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9554 0.9702 6 1 3.9919 0.0189 0.9340 7 6 4.0542 -1.7647 2.1559 8 7 5.4627 -2.0869 1.8775 9 16 6.6449 -1.7783 2.9955 10 8 5.9633 -1.8035 4.2422 11 8 7.6637 -2.7232 2.6982 12 6 7.2045 -0.0964 2.6100 13 6 8.3101 0.3097 3.5866 14 6 7.7680 0.2678 5.0167 15 6 9.4858 -0.6610 3.4582 16 6 8.7754 1.7067 3.2659 17 1 8.3272 2.2507 2.4477 18 6 9.7728 2.2907 4.0178 19 7 10.3182 1.6284 5.0145 20 14 10.3491 4.0226 3.6208 21 1 9.5389 5.0021 4.3885 22 1 11.7800 4.1653 3.9915 23 1 10.1866 4.2773 2.1669 24 6 5.7891 -2.6970 0.5789 25 6 5.1542 -1.8472 -0.5278 26 8 3.7651 -1.6652 -0.2431 27 1 -0.3632 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5899 1.9163 -0.8525 32 1 1.7044 1.8723 0.9233 33 1 1.5090 -1.7407 1.1756 34 1 1.7975 -0.2248 2.0628 35 1 3.4830 -2.6857 2.2716 36 1 3.9865 -1.1728 3.0687 37 1 7.5904 -0.0664 1.5910 38 1 6.3670 0.5952 2.7018 39 1 7.4317 -0.7428 5.2484 40 1 8.5557 0.5567 5.7125 41 1 6.9304 0.9593 5.1081 42 1 9.8720 -0.6312 2.4394 43 1 10.2732 -0.3720 4.1543 44 1 9.1494 -1.6717 3.6899 45 1 11.0201 2.0392 5.5433 46 1 6.8708 -2.7229 0.4468 47 1 5.3901 -3.7105 0.5388 48 1 5.6476 -0.8761 -0.5696 49 1 5.2659 -2.3547 -1.4859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331337741.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:01 Heat of formation + Delta-G solvation = -123.353790 kcal Electronic energy + Delta-G solvation = -29338.866793 eV Core-core repulsion = 25427.933900 eV Total energy + Delta-G solvation = -3910.932893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.51115 -38.26287 -38.16779 -37.99771 -36.96848 -35.70806 -33.65083 -33.01993 -29.20983 -28.46781 -28.38359 -27.72040 -27.27487 -26.91913 -24.52303 -22.82263 -21.69238 -21.20259 -19.90777 -18.94025 -17.93469 -17.67667 -17.29889 -17.05279 -16.73887 -16.57265 -16.29981 -15.84551 -15.80280 -15.39296 -14.98225 -14.95672 -14.79605 -14.65569 -14.45088 -13.91362 -13.55870 -13.51007 -13.27302 -13.13995 -12.98013 -12.93462 -12.88696 -12.79340 -12.69321 -12.58687 -12.51359 -12.39100 -12.20239 -12.16754 -12.05912 -11.99954 -11.61980 -11.59682 -11.25655 -11.09532 -10.58444 -10.43234 -9.77099 -9.22988 -8.04655 -6.23427 -0.72618 1.43094 1.45275 1.53616 1.66291 2.42999 2.78004 2.84305 2.96607 3.16246 3.20232 3.59169 3.81653 3.93355 4.00079 4.06888 4.13308 4.21241 4.29032 4.32287 4.40974 4.48451 4.55488 4.56440 4.65414 4.68649 4.75271 4.79891 4.82534 4.83364 4.89310 4.95034 5.01413 5.04457 5.07303 5.08218 5.08912 5.35534 5.43302 5.51444 5.62871 5.94858 6.04520 6.09006 6.13186 6.30774 6.31926 6.81178 7.45108 8.95263 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013310 B = 0.003859 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.238861 B = 7253.435353 C = 8382.188992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.553 5.553 3 C 0.019 3.981 4 C 0.062 3.938 5 C 0.083 3.917 6 H 0.063 0.937 7 C 0.088 3.912 8 N -1.005 6.005 9 S 2.608 3.392 10 O -0.985 6.985 11 O -0.984 6.984 12 C -0.583 4.583 13 C 0.070 3.930 14 C -0.159 4.159 15 C -0.160 4.160 16 C -0.517 4.517 17 H 0.063 0.937 18 C 0.019 3.981 19 N -0.908 5.908 20 Si 0.954 3.046 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.267 1.267 24 C 0.079 3.921 25 C 0.047 3.953 26 O -0.366 6.366 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.030 0.970 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.031 0.969 45 H 0.261 0.739 46 H 0.099 0.901 47 H 0.087 0.913 48 H 0.057 0.943 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.166 -4.062 -11.423 21.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.277 5.277 3 C -0.129 4.129 4 C -0.067 4.067 5 C 0.023 3.977 6 H 0.081 0.919 7 C -0.038 4.038 8 N -0.844 5.844 9 S 2.708 3.292 10 O -0.975 6.975 11 O -0.975 6.975 12 C -0.716 4.716 13 C 0.068 3.932 14 C -0.217 4.217 15 C -0.218 4.218 16 C -0.556 4.556 17 H 0.081 0.919 18 C -0.181 4.181 19 N -0.547 5.547 20 Si 0.780 3.220 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.046 4.046 25 C -0.031 4.031 26 O -0.284 6.284 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.117 0.883 47 H 0.106 0.894 48 H 0.076 0.924 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.755 -4.993 -11.165 20.744 hybrid contribution 0.677 1.899 0.767 2.157 sum -16.078 -3.094 -10.398 19.396 Atomic orbital electron populations 1.22416 0.86013 1.02809 1.00987 1.61888 1.08836 1.14043 1.42941 1.22476 1.00806 0.88584 1.01052 1.22137 0.92276 0.99884 0.92408 1.22590 0.96267 0.94334 0.84507 0.91878 1.22297 0.80676 1.01749 0.99043 1.57804 1.18826 1.76644 1.31087 1.05036 0.72955 0.77894 0.73352 1.93494 1.73746 1.87980 1.42316 1.93497 1.58932 1.60309 1.84732 1.30501 1.09871 1.20929 1.10276 1.17922 0.89276 0.96059 0.89948 1.22200 1.00682 0.98562 1.00250 1.22206 1.01966 0.96113 1.01469 1.21271 1.19747 0.98901 1.15653 0.91901 1.25668 0.96386 1.01163 0.94879 1.69940 1.26602 1.38202 1.19908 0.85622 0.77257 0.80435 0.78712 1.20357 1.21285 1.19128 1.22336 1.02133 0.98315 0.81781 1.23115 0.82094 0.99597 0.98337 1.88028 1.23762 1.76527 1.40056 0.95204 0.90704 0.90861 0.91961 0.90548 0.95190 0.89017 0.91931 0.89193 0.88459 0.84707 0.84862 0.95027 0.91024 0.94079 0.94004 0.91019 0.95032 0.92901 0.88299 0.89438 0.92449 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.57 127.69 1.22 1.57 16 2 N -0.55 -9.85 4.89 -948.82 -4.64 -14.48 16 3 C 0.02 0.31 9.32 127.69 1.19 1.50 16 4 C 0.06 1.06 4.66 86.30 0.40 1.47 16 5 C 0.08 1.70 2.66 30.84 0.08 1.78 16 6 H 0.06 1.33 6.56 -2.38 -0.02 1.31 16 7 C 0.09 2.02 5.82 86.50 0.50 2.52 16 8 N -1.01 -27.10 3.27 -510.87 -1.67 -28.77 16 9 S 2.61 94.20 4.46 -56.49 -0.25 93.95 16 10 O -0.99 -40.24 14.42 -127.65 -1.84 -42.08 16 11 O -0.98 -40.31 14.44 -127.65 -1.84 -42.15 16 12 C -0.58 -21.67 5.12 71.98 0.37 -21.30 16 13 C 0.07 3.33 0.52 -52.93 -0.03 3.30 16 14 C -0.16 -7.82 7.78 71.98 0.56 -7.26 16 15 C -0.16 -7.86 7.77 71.98 0.56 -7.30 16 16 C -0.52 -26.48 8.01 25.60 0.21 -26.27 16 17 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 18 C 0.02 0.97 5.15 84.66 0.44 1.40 16 19 N -0.91 -49.85 9.35 21.45 0.20 -49.65 16 20 Si 0.95 41.57 29.54 68.60 2.03 43.60 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 C 0.08 1.76 6.50 86.36 0.56 2.32 16 25 C 0.05 0.88 6.99 72.08 0.50 1.38 16 26 O -0.37 -7.98 10.25 -148.98 -1.53 -9.50 16 27 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.07 0.89 8.12 -2.38 -0.02 0.87 16 29 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 30 H 0.06 1.13 6.47 -2.39 -0.02 1.12 16 31 H 0.08 1.11 8.12 -2.38 -0.02 1.10 16 32 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.09 1.46 8.06 -2.39 -0.02 1.44 16 34 H 0.06 0.96 8.12 -2.39 -0.02 0.94 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.10 2.24 7.22 -2.39 -0.02 2.23 16 37 H 0.13 4.46 8.14 -2.39 -0.02 4.44 16 38 H 0.13 4.42 8.14 -2.39 -0.02 4.40 16 39 H 0.03 1.48 5.46 -2.39 -0.01 1.47 16 40 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 41 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 44 H 0.03 1.48 5.46 -2.38 -0.01 1.47 16 45 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 46 H 0.10 2.20 7.23 -2.39 -0.02 2.19 16 47 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -66.84 380.34 -2.06 -68.90 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.92 Total: 25.08 kcal Atomic # 6 Polarization: -51.45 SS G_CDS: 6.57 Total: -44.88 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -6.10 Total: -92.91 kcal Atomic # 8 Polarization: -88.53 SS G_CDS: -5.21 Total: -93.74 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 94.20 SS G_CDS: -0.25 Total: 93.95 kcal Total: -66.84 -2.06 -68.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331337741.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.456 kcal (2) G-P(sol) polarization free energy of solvation -66.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds