Wall clock time and date at job start Tue Mar 31 2020 17:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47153 * 2 1 4 4 C 1.50700 * 109.47251 * 239.99516 * 2 1 3 5 5 H 1.07994 * 120.00032 * 240.00158 * 4 2 1 6 6 C 1.37877 * 119.99525 * 60.00010 * 4 2 1 7 7 N 1.31509 * 120.00217 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99807 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47085 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47420 * 120.00003 * 8 6 4 11 11 H 1.48504 * 109.47375 * 240.00348 * 8 6 4 12 12 C 1.53006 * 109.46970 * 119.99632 * 2 1 3 13 13 S 1.81401 * 109.47269 * 299.99801 * 12 2 1 14 14 O 1.42101 * 110.53918 * 68.37521 * 13 12 2 15 15 O 1.42096 * 110.54376 * 291.62880 * 13 12 2 16 16 N 1.65595 * 104.44904 * 179.97438 * 13 12 2 17 17 C 1.46498 * 120.00100 * 65.00257 * 16 13 12 18 18 C 1.52994 * 109.47128 * 165.00078 * 17 16 13 19 19 N 1.46905 * 109.46979 * 180.02562 * 18 17 16 20 20 C 1.48032 * 110.99969 * 169.99974 * 19 18 17 21 21 C 1.50980 * 113.13021 * 83.99537 * 20 19 18 22 22 C 1.54708 * 109.07681 * 92.04806 * 21 20 19 23 23 O 1.36615 * 110.79484 * 286.64287 * 22 21 20 24 24 C 1.43453 * 117.83115 * 61.03624 * 23 22 21 25 25 C 1.47393 * 110.99638 * 297.17900 * 19 18 17 26 26 H 1.09006 * 109.46927 * 300.00241 * 1 2 3 27 27 H 1.09002 * 109.46646 * 60.00099 * 1 2 3 28 28 H 1.08989 * 109.47265 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46803 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47264 * 299.99523 * 3 2 1 31 31 H 1.08997 * 109.47577 * 59.99897 * 3 2 1 32 32 H 0.97004 * 120.00245 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.46690 * 179.97438 * 12 2 1 34 34 H 1.09003 * 109.46968 * 59.99734 * 12 2 1 35 35 H 0.97001 * 119.99792 * 245.00436 * 16 13 12 36 36 H 1.09002 * 109.46972 * 44.99555 * 17 16 13 37 37 H 1.08998 * 109.46880 * 284.99676 * 17 16 13 38 38 H 1.09002 * 109.47621 * 59.99874 * 18 17 16 39 39 H 1.09006 * 109.47222 * 299.99651 * 18 17 16 40 40 H 1.09007 * 108.74869 * 323.05415 * 20 19 18 41 41 H 1.08998 * 108.74936 * 204.93726 * 20 19 18 42 42 H 1.08998 * 109.53992 * 332.16381 * 21 20 19 43 43 H 1.09003 * 109.60353 * 211.96164 * 21 20 19 44 44 H 1.08997 * 109.21263 * 166.30937 * 22 21 20 45 45 H 1.08994 * 109.21404 * 46.98177 * 22 21 20 46 46 H 1.08998 * 109.83940 * 37.44361 * 24 23 22 47 47 H 1.09002 * 109.83724 * 158.40830 * 24 23 22 48 48 H 1.09006 * 109.06652 * 313.80259 * 25 19 18 49 49 H 1.08997 * 109.06668 * 72.80738 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1484 -2.2858 -3.6036 10 1 1.1678 -1.5869 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 0.0280 -0.0181 2.8544 15 8 2.0479 1.4102 2.8544 16 7 2.0529 -0.7406 3.9937 17 6 3.5013 -0.7980 4.2061 18 6 3.7901 -1.3344 5.6095 19 7 5.2425 -1.3914 5.8227 20 6 5.5598 -1.6756 7.2404 21 6 5.5314 -3.1485 7.5708 22 6 6.9522 -3.7341 7.3929 23 8 7.2687 -3.8454 6.0686 24 6 7.2988 -2.6448 5.2840 25 6 5.8783 -2.3287 4.8794 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 0.7095 1.1617 -3.4844 33 1 3.1299 -0.7216 1.2491 34 1 1.6766 -1.7489 1.2494 35 1 1.4557 -1.2150 4.5930 36 1 3.9232 0.2020 4.1053 37 1 3.9513 -1.4586 3.4650 38 1 3.3682 -2.3344 5.7103 39 1 3.3401 -0.6739 6.3507 40 1 4.8353 -1.1608 7.8716 41 1 6.5533 -1.2859 7.4619 42 1 4.8400 -3.6592 6.9005 43 1 5.2072 -3.2857 8.6024 44 1 6.9944 -4.7200 7.8558 45 1 7.6739 -3.0787 7.8802 46 1 7.7058 -1.8257 5.8768 47 1 7.9109 -2.7990 4.3953 48 1 5.3016 -3.2533 4.8530 49 1 5.8833 -1.8838 3.8844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331929169.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:19 Heat of formation + Delta-G solvation = -110.233531 kcal Electronic energy + Delta-G solvation = -28335.321706 eV Core-core repulsion = 24424.957750 eV Total energy + Delta-G solvation = -3910.363956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.39191 -37.40978 -36.51731 -36.27186 -35.33134 -34.89446 -32.83908 -31.66786 -30.11522 -27.34821 -26.64080 -26.00846 -25.71144 -25.22725 -22.83477 -22.42873 -20.29564 -19.57217 -18.78117 -17.40528 -17.10420 -16.94059 -16.54703 -15.98519 -15.86733 -15.55441 -15.12762 -15.04622 -14.71537 -14.58106 -14.02972 -13.62025 -13.38148 -13.12009 -13.00661 -12.85398 -12.50768 -12.34541 -12.13953 -12.08680 -11.83849 -11.73159 -11.43004 -11.38290 -11.23624 -11.08100 -11.02516 -10.90816 -10.75323 -10.70225 -10.36104 -10.27651 -10.11160 -9.92529 -9.65534 -9.62258 -9.24853 -8.66747 -8.62213 -8.40688 -6.03749 -4.15737 0.86119 3.08742 3.24787 3.33307 3.35798 3.40494 3.62630 4.29442 4.34022 4.37879 4.42808 4.56726 4.68908 4.76429 4.84791 4.87469 4.93239 5.01405 5.08974 5.21679 5.23877 5.27178 5.40419 5.42737 5.48894 5.58570 5.66616 5.70217 5.70646 5.74769 5.82715 5.99684 6.37702 6.65418 6.65785 6.70572 6.80010 6.91051 7.02117 7.11815 7.19482 7.31958 7.50727 7.67827 7.98402 8.09746 8.32907 8.83058 9.49814 10.97596 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.002921 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.126071 B = 9582.395053 C =10906.597969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.582 4.582 13 S 2.596 3.404 14 O -0.965 6.965 15 O -0.962 6.962 16 N -1.131 6.131 17 C 0.117 3.883 18 C 0.053 3.947 19 N -0.541 5.541 20 C 0.051 3.949 21 C -0.197 4.197 22 C 0.076 3.924 23 O -0.387 6.387 24 C 0.063 3.937 25 C 0.017 3.983 26 H 0.028 0.972 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.028 0.972 32 H 0.262 0.738 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.410 0.590 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.039 0.961 46 H 0.067 0.933 47 H 0.105 0.895 48 H 0.053 0.947 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.234 -7.388 19.396 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.715 4.715 13 S 2.693 3.307 14 O -0.956 6.956 15 O -0.952 6.952 16 N -0.889 5.889 17 C -0.010 4.010 18 C -0.077 4.077 19 N -0.266 5.266 20 C -0.077 4.077 21 C -0.236 4.236 22 C -0.002 4.002 23 O -0.305 6.305 24 C -0.013 4.013 25 C -0.110 4.110 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.242 0.758 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.057 0.943 46 H 0.085 0.915 47 H 0.123 0.877 48 H 0.071 0.929 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.974 -6.099 19.080 22.377 hybrid contribution -0.033 -1.797 -0.513 1.869 sum 9.941 -7.896 18.567 22.492 Atomic orbital electron populations 1.22280 0.96945 1.00629 1.02344 1.17931 0.92808 0.92228 0.89054 1.22277 0.99730 0.97782 1.02372 1.20985 1.31652 1.12068 0.89407 0.92261 1.24941 0.94895 0.94984 0.98946 1.69811 1.36377 1.22589 1.23371 0.86483 0.78637 0.79621 0.82914 1.19836 1.20969 1.20938 1.30521 1.11224 1.12851 1.16928 1.05565 0.74326 0.75204 0.75570 1.93553 1.29532 1.86694 1.85790 1.93542 1.78099 1.38113 1.85477 1.55828 1.13931 1.71284 1.47810 1.21223 0.80195 1.02851 0.96733 1.22292 0.87752 1.00132 0.97488 1.62150 1.09705 1.50861 1.03893 1.22054 1.02685 0.94434 0.88497 1.22907 0.99638 0.98068 1.03010 1.21830 0.93614 1.01381 0.83396 1.86470 1.89376 1.33460 1.21187 1.22603 0.95888 0.87001 0.95813 1.22667 0.95730 0.95358 0.97282 0.95358 0.88629 0.94485 0.94451 0.88664 0.95288 0.92795 0.86486 0.86325 0.75768 0.89212 0.91911 0.94119 0.89817 0.90714 0.90677 0.90886 0.90323 0.89112 0.94263 0.91485 0.87727 0.92917 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 7.78 37.16 0.29 -3.76 16 2 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 3 C -0.16 -4.03 7.77 37.16 0.29 -3.74 16 4 C -0.50 -13.13 8.01 -34.44 -0.28 -13.41 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -24.10 9.35 55.43 0.52 -23.58 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 C -0.58 -11.20 5.01 37.16 0.19 -11.02 16 13 S 2.60 47.49 4.49 -107.50 -0.48 47.00 16 14 O -0.97 -20.13 15.70 -57.54 -0.90 -21.04 16 15 O -0.96 -20.12 15.12 -57.54 -0.87 -20.99 16 16 N -1.13 -14.94 5.88 -10.62 -0.06 -15.01 16 17 C 0.12 1.36 5.98 -4.05 -0.02 1.33 16 18 C 0.05 0.50 4.97 -3.82 -0.02 0.48 16 19 N -0.54 -4.87 4.77 -235.71 -1.12 -6.00 16 20 C 0.05 0.37 5.14 -4.21 -0.02 0.35 16 21 C -0.20 -1.32 5.67 -26.85 -0.15 -1.47 16 22 C 0.08 0.53 6.43 38.06 0.24 0.77 16 23 O -0.39 -3.51 9.96 -21.73 -0.22 -3.72 16 24 C 0.06 0.49 6.50 36.18 0.24 0.72 16 25 C 0.02 0.15 4.42 -4.54 -0.02 0.13 16 26 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 27 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.87 8.14 -51.92 -0.42 0.44 16 30 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 31 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 34 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 35 H 0.41 4.52 8.62 -34.46 -0.30 4.23 16 36 H 0.09 1.15 7.70 -51.93 -0.40 0.75 16 37 H 0.06 0.66 6.76 -51.93 -0.35 0.31 16 38 H 0.04 0.36 7.71 -51.93 -0.40 -0.04 16 39 H 0.08 0.76 7.80 -51.93 -0.40 0.35 16 40 H 0.07 0.51 7.65 -51.92 -0.40 0.11 16 41 H 0.07 0.52 6.54 -51.93 -0.34 0.18 16 42 H 0.07 0.59 6.83 -51.93 -0.35 0.24 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.04 0.24 7.72 -51.93 -0.40 -0.16 16 46 H 0.07 0.49 6.78 -51.93 -0.35 0.14 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.50 7.05 -51.93 -0.37 0.13 16 49 H 0.09 0.78 7.07 -51.93 -0.37 0.41 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -32.17 373.82 -10.10 -42.27 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -8.13 Total: 5.95 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 0.56 Total: -26.10 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.67 Total: -44.58 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -1.99 Total: -45.75 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 47.49 SS G_CDS: -0.48 Total: 47.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.17 -10.10 -42.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331929169.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.964 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds