Wall clock time and date at job start Tue Mar 31 2020 17:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47153 * 2 1 4 4 C 1.50700 * 109.47251 * 239.99516 * 2 1 3 5 5 H 1.07994 * 120.00032 * 240.00158 * 4 2 1 6 6 C 1.37877 * 119.99525 * 60.00010 * 4 2 1 7 7 N 1.31509 * 120.00217 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99807 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47085 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47420 * 120.00003 * 8 6 4 11 11 H 1.48504 * 109.47375 * 240.00348 * 8 6 4 12 12 C 1.53006 * 109.46970 * 119.99632 * 2 1 3 13 13 S 1.81401 * 109.47269 * 299.99801 * 12 2 1 14 14 O 1.42101 * 110.53918 * 68.37521 * 13 12 2 15 15 O 1.42096 * 110.54376 * 291.62880 * 13 12 2 16 16 N 1.65595 * 104.44904 * 179.97438 * 13 12 2 17 17 C 1.46498 * 120.00100 * 65.00257 * 16 13 12 18 18 C 1.52994 * 109.47128 * 165.00078 * 17 16 13 19 19 N 1.46905 * 109.46979 * 180.02562 * 18 17 16 20 20 C 1.48032 * 110.99969 * 169.99974 * 19 18 17 21 21 C 1.50980 * 113.13021 * 83.99537 * 20 19 18 22 22 C 1.54708 * 109.07681 * 92.04806 * 21 20 19 23 23 O 1.36615 * 110.79484 * 286.64287 * 22 21 20 24 24 C 1.43453 * 117.83115 * 61.03624 * 23 22 21 25 25 C 1.47393 * 110.99638 * 297.17900 * 19 18 17 26 26 H 1.09006 * 109.46927 * 300.00241 * 1 2 3 27 27 H 1.09002 * 109.46646 * 60.00099 * 1 2 3 28 28 H 1.08989 * 109.47265 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46803 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47264 * 299.99523 * 3 2 1 31 31 H 1.08997 * 109.47577 * 59.99897 * 3 2 1 32 32 H 0.97004 * 120.00245 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.46690 * 179.97438 * 12 2 1 34 34 H 1.09003 * 109.46968 * 59.99734 * 12 2 1 35 35 H 0.97001 * 119.99792 * 245.00436 * 16 13 12 36 36 H 1.09002 * 109.46972 * 44.99555 * 17 16 13 37 37 H 1.08998 * 109.46880 * 284.99676 * 17 16 13 38 38 H 1.09002 * 109.47621 * 59.99874 * 18 17 16 39 39 H 1.09006 * 109.47222 * 299.99651 * 18 17 16 40 40 H 1.09007 * 108.74869 * 323.05415 * 20 19 18 41 41 H 1.08998 * 108.74936 * 204.93726 * 20 19 18 42 42 H 1.08998 * 109.53992 * 332.16381 * 21 20 19 43 43 H 1.09003 * 109.60353 * 211.96164 * 21 20 19 44 44 H 1.08997 * 109.21263 * 166.30937 * 22 21 20 45 45 H 1.08994 * 109.21404 * 46.98177 * 22 21 20 46 46 H 1.08998 * 109.83940 * 37.44361 * 24 23 22 47 47 H 1.09002 * 109.83724 * 158.40830 * 24 23 22 48 48 H 1.09006 * 109.06652 * 313.80259 * 25 19 18 49 49 H 1.08997 * 109.06668 * 72.80738 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1484 -2.2858 -3.6036 10 1 1.1678 -1.5869 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 0.0280 -0.0181 2.8544 15 8 2.0479 1.4102 2.8544 16 7 2.0529 -0.7406 3.9937 17 6 3.5013 -0.7980 4.2061 18 6 3.7901 -1.3344 5.6095 19 7 5.2425 -1.3914 5.8227 20 6 5.5598 -1.6756 7.2404 21 6 5.5314 -3.1485 7.5708 22 6 6.9522 -3.7341 7.3929 23 8 7.2687 -3.8454 6.0686 24 6 7.2988 -2.6448 5.2840 25 6 5.8783 -2.3287 4.8794 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 0.7095 1.1617 -3.4844 33 1 3.1299 -0.7216 1.2491 34 1 1.6766 -1.7489 1.2494 35 1 1.4557 -1.2150 4.5930 36 1 3.9232 0.2020 4.1053 37 1 3.9513 -1.4586 3.4650 38 1 3.3682 -2.3344 5.7103 39 1 3.3401 -0.6739 6.3507 40 1 4.8353 -1.1608 7.8716 41 1 6.5533 -1.2859 7.4619 42 1 4.8400 -3.6592 6.9005 43 1 5.2072 -3.2857 8.6024 44 1 6.9944 -4.7200 7.8558 45 1 7.6739 -3.0787 7.8802 46 1 7.7058 -1.8257 5.8768 47 1 7.9109 -2.7990 4.3953 48 1 5.3016 -3.2533 4.8530 49 1 5.8833 -1.8838 3.8844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331929169.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:18 Heat of formation + Delta-G solvation = -134.352101 kcal Electronic energy + Delta-G solvation = -28336.367566 eV Core-core repulsion = 24424.957750 eV Total energy + Delta-G solvation = -3911.409816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.99395 -38.26216 -38.11649 -37.97429 -36.89717 -35.86659 -33.62907 -33.41650 -30.87676 -28.33977 -28.02818 -27.68034 -27.24372 -26.66849 -23.64999 -22.99097 -21.41539 -20.90137 -20.21268 -18.78253 -17.91864 -17.84511 -17.58014 -17.28700 -16.96787 -16.79910 -16.61579 -16.18538 -15.81489 -15.64521 -14.95650 -14.89213 -14.66545 -14.41881 -14.17200 -14.00044 -13.81651 -13.61427 -13.46443 -13.09646 -12.98912 -12.90497 -12.75282 -12.70472 -12.67965 -12.48713 -12.48072 -12.18076 -12.12487 -12.04259 -11.94438 -11.81996 -11.55873 -11.36196 -11.30091 -10.68214 -10.50928 -10.41644 -10.29531 -9.27879 -8.02625 -6.21193 -0.60919 1.43412 1.46582 1.56010 1.86159 2.44650 2.78375 2.85666 2.95898 3.19839 3.34091 3.74616 3.81977 3.95730 4.03346 4.04661 4.10341 4.18771 4.25460 4.31054 4.42155 4.48577 4.49796 4.61088 4.63451 4.72623 4.83037 4.86980 4.87886 4.93087 4.96376 4.99373 5.00471 5.05256 5.08797 5.10832 5.24892 5.39798 5.51869 5.65613 5.96953 5.98573 6.02804 6.11716 6.13851 6.34936 6.63932 6.84059 7.47286 8.97427 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.002921 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.126071 B = 9582.395053 C =10906.597969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.517 4.517 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.586 4.586 13 S 2.617 3.383 14 O -0.993 6.993 15 O -0.990 6.990 16 N -1.113 6.113 17 C 0.110 3.890 18 C 0.058 3.942 19 N -0.550 5.550 20 C 0.049 3.951 21 C -0.189 4.189 22 C 0.069 3.931 23 O -0.405 6.405 24 C 0.063 3.937 25 C 0.017 3.983 26 H 0.033 0.967 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.423 0.577 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.114 0.886 48 H 0.044 0.956 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.461 -8.807 20.702 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 C -0.218 4.218 4 C -0.556 4.556 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.189 1.189 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.719 4.719 13 S 2.714 3.286 14 O -0.983 6.983 15 O -0.980 6.980 16 N -0.875 5.875 17 C -0.017 4.017 18 C -0.071 4.071 19 N -0.275 5.275 20 C -0.078 4.078 21 C -0.229 4.229 22 C -0.008 4.008 23 O -0.323 6.323 24 C -0.012 4.012 25 C -0.110 4.110 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.259 0.741 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.132 0.868 48 H 0.063 0.937 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.200 -7.530 20.395 24.456 hybrid contribution -0.385 -1.358 -0.843 1.644 sum 10.815 -8.888 19.553 24.047 Atomic orbital electron populations 1.22222 0.97844 1.00506 1.01358 1.17916 0.92272 0.92165 0.90898 1.22210 0.99894 0.98353 1.01352 1.21338 1.31558 1.12267 0.90400 0.91808 1.25680 0.95199 0.95657 1.01698 1.69952 1.37272 1.23711 1.23769 0.85562 0.78019 0.78750 0.79616 1.18886 1.21058 1.20959 1.30453 1.12594 1.13372 1.15433 1.04629 0.73406 0.74815 0.75774 1.93509 1.31439 1.87065 1.86266 1.93506 1.78447 1.40060 1.85951 1.55297 1.15068 1.70781 1.46307 1.21423 0.78702 1.02765 0.98784 1.22207 0.88357 1.00565 0.96015 1.62142 1.09274 1.51226 1.04892 1.22118 1.03127 0.94991 0.87553 1.22835 0.99160 0.97297 1.03574 1.21984 0.93943 1.02209 0.82688 1.86448 1.89545 1.34152 1.22186 1.22655 0.95496 0.86875 0.96222 1.22674 0.96153 0.94875 0.97319 0.94872 0.91068 0.94096 0.94004 0.91131 0.94826 0.92952 0.84489 0.84478 0.74123 0.90394 0.90586 0.93204 0.89341 0.90057 0.90240 0.92275 0.88740 0.88275 0.93348 0.91056 0.86814 0.93740 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.01 7.78 71.98 0.56 -7.45 16 2 C 0.07 3.33 0.52 -52.93 -0.03 3.30 16 3 C -0.16 -7.92 7.77 71.98 0.56 -7.36 16 4 C -0.52 -26.69 8.01 25.60 0.21 -26.49 16 5 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 6 C 0.02 0.90 5.15 84.66 0.44 1.33 16 7 N -0.91 -50.27 9.35 21.45 0.20 -50.07 16 8 Si 0.95 41.97 29.54 68.60 2.03 43.99 16 9 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 C -0.59 -21.64 5.01 71.98 0.36 -21.28 16 13 S 2.62 92.55 4.49 -56.49 -0.25 92.29 16 14 O -0.99 -40.49 15.70 -127.65 -2.00 -42.50 16 15 O -0.99 -40.64 15.12 -127.65 -1.93 -42.57 16 16 N -1.11 -27.12 5.88 -187.50 -1.10 -28.22 16 17 C 0.11 2.32 5.98 86.38 0.52 2.84 16 18 C 0.06 0.97 4.97 86.30 0.43 1.39 16 19 N -0.55 -8.83 4.77 -899.64 -4.29 -13.12 16 20 C 0.05 0.62 5.14 85.43 0.44 1.06 16 21 C -0.19 -2.13 5.67 30.52 0.17 -1.96 16 22 C 0.07 0.83 6.43 72.56 0.47 1.30 16 23 O -0.40 -6.71 9.96 -100.67 -1.00 -7.71 16 24 C 0.06 0.88 6.50 71.35 0.46 1.35 16 25 C 0.02 0.27 4.42 85.57 0.38 0.65 16 26 H 0.03 1.57 5.46 -2.38 -0.01 1.55 16 27 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 31 H 0.03 1.58 5.46 -2.39 -0.01 1.57 16 32 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 33 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 34 H 0.14 4.51 8.14 -2.39 -0.02 4.49 16 35 H 0.42 8.33 8.62 -96.75 -0.83 7.50 16 36 H 0.08 1.88 7.70 -2.39 -0.02 1.86 16 37 H 0.08 1.43 6.76 -2.39 -0.02 1.41 16 38 H 0.05 0.75 7.71 -2.39 -0.02 0.73 16 39 H 0.09 1.39 7.80 -2.38 -0.02 1.37 16 40 H 0.08 0.91 7.65 -2.38 -0.02 0.89 16 41 H 0.08 0.94 6.54 -2.39 -0.02 0.92 16 42 H 0.06 0.85 6.83 -2.39 -0.02 0.84 16 43 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.05 0.49 7.72 -2.39 -0.02 0.47 16 46 H 0.07 0.92 6.78 -2.39 -0.02 0.91 16 47 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.04 0.77 7.05 -2.38 -0.02 0.76 16 49 H 0.09 1.40 7.07 -2.39 -0.02 1.39 16 Total: -1.00 -68.05 373.82 -3.29 -71.33 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.11 Total: 27.89 kcal Atomic # 6 Polarization: -56.29 SS G_CDS: 4.96 Total: -51.33 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -5.19 Total: -91.41 kcal Atomic # 8 Polarization: -87.84 SS G_CDS: -4.94 Total: -92.77 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: 92.55 SS G_CDS: -0.25 Total: 92.29 kcal Total: -68.05 -3.29 -71.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331929169.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.018 kcal (2) G-P(sol) polarization free energy of solvation -68.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds