Wall clock time and date at job start Tue Mar 31 2020 17:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46680 * 2 1 4 4 H 1.09000 * 110.54446 * 52.38826 * 3 2 1 5 5 C 1.54261 * 110.48571 * 289.76952 * 3 2 1 6 6 C 1.53872 * 106.59985 * 217.71438 * 5 3 2 7 7 C 1.54263 * 106.60107 * 0.02562 * 6 5 3 8 8 C 1.54891 * 104.19192 * 23.61133 * 7 6 5 9 9 H 1.08997 * 110.91580 * 80.44555 * 8 7 6 10 10 N 1.46506 * 110.75427 * 203.74431 * 8 7 6 11 11 S 1.65605 * 119.99679 * 258.32696 * 10 8 7 12 12 O 1.42102 * 106.40273 * 311.45972 * 11 10 8 13 13 O 1.42102 * 106.39854 * 178.54024 * 11 10 8 14 14 N 1.65595 * 107.21885 * 65.00194 * 11 10 8 15 15 C 1.46505 * 120.00162 * 270.00005 * 14 11 10 16 16 C 1.50704 * 109.46942 * 265.00333 * 15 14 11 17 17 H 1.08005 * 120.00035 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99902 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99882 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99822 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47072 * 60.00146 * 20 18 16 22 22 H 1.48508 * 109.46993 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47567 * 300.00071 * 20 18 16 24 24 C 1.46500 * 120.00362 * 89.99730 * 14 11 10 25 25 C 1.52996 * 109.47197 * 265.00137 * 24 14 11 26 26 O 1.42901 * 109.47091 * 64.99872 * 25 24 14 27 27 C 1.42905 * 114.00134 * 179.97438 * 26 25 24 28 28 H 1.08997 * 109.47526 * 300.00312 * 1 2 3 29 29 H 1.09001 * 109.46868 * 60.00515 * 1 2 3 30 30 H 1.09001 * 109.46712 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47526 * 239.99688 * 2 1 3 32 32 H 1.09001 * 109.46868 * 119.99485 * 2 1 3 33 33 H 1.08998 * 110.03507 * 336.99911 * 5 3 2 34 34 H 1.09005 * 110.03431 * 98.43197 * 5 3 2 35 35 H 1.08997 * 110.03517 * 119.28784 * 6 5 3 36 36 H 1.09005 * 110.03486 * 240.66848 * 6 5 3 37 37 H 1.09000 * 110.48775 * 264.93578 * 7 6 5 38 38 H 1.09003 * 110.48727 * 142.28211 * 7 6 5 39 39 H 0.96995 * 120.00022 * 78.32593 * 10 8 7 40 40 H 1.09000 * 109.46782 * 24.99706 * 15 14 11 41 41 H 1.08989 * 109.47345 * 144.99919 * 15 14 11 42 42 H 0.97005 * 119.99931 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.47119 * 144.99994 * 24 14 11 44 44 H 1.09003 * 109.46694 * 24.99772 * 24 14 11 45 45 H 1.08994 * 109.47303 * 304.99885 * 25 24 14 46 46 H 1.09002 * 109.47060 * 184.99415 * 25 24 14 47 47 H 1.09001 * 109.47103 * 300.00246 * 27 26 25 48 48 H 1.09004 * 109.47054 * 59.99750 * 27 26 25 49 49 H 1.09000 * 109.47187 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5801 2.0108 0.8085 5 6 1.7590 2.1145 -1.3599 6 6 2.9737 3.0073 -1.6683 7 6 3.9507 2.8463 -0.4854 8 6 3.5837 1.4712 0.1258 9 1 4.0334 0.6591 -0.4454 10 7 3.9912 1.4025 1.5314 11 16 5.3689 0.5870 1.9551 12 8 5.3032 -0.6757 1.3067 13 8 5.5042 0.7322 3.3622 14 7 6.6451 1.3952 1.2767 15 6 7.1076 1.0381 -0.0667 16 6 8.2485 0.0591 0.0385 17 1 8.5947 -0.2644 1.0091 18 6 8.8503 -0.4236 -1.1042 19 7 8.4284 -0.0300 -2.2860 20 14 10.2649 -1.6366 -0.9737 21 1 9.8052 -2.8589 -0.2666 22 1 10.7328 -1.9996 -2.3356 23 1 11.3807 -1.0161 -0.2153 24 6 7.3117 2.4674 2.0199 25 6 6.7143 3.8164 1.6150 26 8 5.3447 3.8714 2.0189 27 6 4.6894 5.0971 1.6868 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6466 1.3563 -2.1349 34 1 0.8558 2.7215 -1.2970 35 1 3.4507 2.6824 -2.5930 36 1 2.6599 4.0475 -1.7559 37 1 3.7995 3.6410 0.2451 38 1 4.9815 2.8434 -0.8397 39 1 3.4540 1.8346 2.2137 40 1 6.2887 0.5832 -0.6239 41 1 7.4454 1.9354 -0.5851 42 1 8.8515 -0.3699 -3.0900 43 1 8.3776 2.4590 1.7922 44 1 7.1673 2.3123 3.0892 45 1 6.7789 3.9323 0.5332 46 1 7.2687 4.6197 2.1003 47 1 5.2020 5.9267 2.1739 48 1 4.7121 5.2401 0.6064 49 1 3.6543 5.0594 2.0263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336940480.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:32 Heat of formation + Delta-G solvation = -143.550400 kcal Electronic energy + Delta-G solvation = -30265.879249 eV Core-core repulsion = 26354.070565 eV Total energy + Delta-G solvation = -3911.808684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.82715 -37.85205 -36.37595 -35.40441 -34.97076 -33.50370 -32.73210 -32.51531 -29.50943 -27.51896 -26.85909 -26.71977 -25.85575 -23.00013 -22.50028 -21.57825 -20.47542 -19.76584 -18.55613 -17.30900 -16.69104 -16.42327 -16.21733 -16.06638 -15.51591 -15.10435 -15.02529 -14.57611 -14.38366 -14.15871 -13.57909 -13.35365 -13.19979 -12.93565 -12.70850 -12.58197 -12.42170 -11.97962 -11.78948 -11.69550 -11.51374 -11.48858 -11.29531 -11.24437 -11.12909 -11.05473 -10.96938 -10.93952 -10.64874 -10.56088 -10.47516 -10.33974 -10.27775 -10.15217 -9.95960 -9.74781 -9.44406 -8.86481 -8.41613 -8.00936 -6.04464 -4.07933 1.47664 3.34782 3.38467 3.43560 3.69114 3.95436 4.36534 4.47864 4.67583 4.76867 4.86791 5.23813 5.24239 5.29181 5.30177 5.33975 5.35951 5.43114 5.51139 5.58016 5.58977 5.60458 5.64342 5.69239 5.71321 5.74564 5.86512 5.90182 5.94079 6.03342 6.08121 6.11256 6.18072 6.25522 6.36979 6.39343 6.49030 6.55262 6.58120 6.78556 7.22235 7.32162 7.43599 7.52262 7.73892 7.94156 8.23896 8.94326 9.57228 11.03789 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010873 B = 0.005210 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.548363 B = 5372.717993 C = 6117.611428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.092 4.092 4 H 0.076 0.924 5 C -0.117 4.117 6 C -0.125 4.125 7 C -0.144 4.144 8 C 0.156 3.844 9 H 0.098 0.902 10 N -1.111 6.111 11 S 2.788 3.212 12 O -0.972 6.972 13 O -1.002 7.002 14 N -0.988 5.988 15 C 0.260 3.740 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.128 3.872 25 C 0.040 3.960 26 O -0.383 6.383 27 C 0.033 3.967 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.408 0.592 40 H 0.037 0.963 41 H 0.031 0.969 42 H 0.263 0.737 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.034 0.966 48 H 0.042 0.958 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.748 10.515 3.307 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.112 4.112 4 H 0.095 0.905 5 C -0.155 4.155 6 C -0.163 4.163 7 C -0.183 4.183 8 C 0.048 3.952 9 H 0.116 0.884 10 N -0.867 5.867 11 S 2.796 3.204 12 O -0.955 6.955 13 O -0.986 6.986 14 N -0.828 5.828 15 C 0.138 3.862 16 C -0.568 4.568 17 H 0.077 0.923 18 C -0.139 4.139 19 N -0.535 5.535 20 Si 0.722 3.278 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.202 1.202 24 C 0.001 3.999 25 C -0.038 4.038 26 O -0.302 6.302 27 C -0.064 4.064 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.240 0.760 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.060 0.940 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.625 9.420 3.586 16.155 hybrid contribution 0.721 0.250 -0.253 0.804 sum -11.904 9.670 3.332 15.694 Atomic orbital electron populations 1.21773 0.96210 1.01271 1.01403 1.21601 0.95323 0.96103 1.02859 1.22248 0.95049 0.96205 0.97718 0.90535 1.22161 0.97865 0.98698 0.96754 1.22095 0.95981 0.99188 0.99042 1.23024 0.99778 0.98161 0.97324 1.21722 0.94417 0.97910 0.81135 0.88361 1.55906 1.43580 1.73450 1.13767 1.01694 0.72636 0.73671 0.72447 1.93619 1.86179 1.39002 1.76727 1.93509 1.86390 1.87395 1.31319 1.57633 1.46843 1.48938 1.29405 1.18989 0.95324 0.95698 0.76173 1.21478 1.16501 1.25866 0.92911 0.92281 1.24902 0.97370 0.96438 0.95162 1.69905 1.41890 1.44326 0.97359 0.86614 0.82257 0.81850 0.77052 1.20035 1.21252 1.20241 1.21188 0.98017 0.84206 0.96508 1.23174 0.82317 0.98703 0.99611 1.87895 1.24466 1.36519 1.81318 1.22688 0.97527 0.86810 0.99351 0.93089 0.92862 0.93050 0.91526 0.91581 0.91576 0.92163 0.91638 0.92326 0.90098 0.90892 0.75975 0.94559 0.95061 0.92729 0.88380 0.89750 0.92481 0.93180 0.94726 0.93964 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.79 37.16 0.36 -1.12 16 2 C -0.12 -1.49 5.32 -26.73 -0.14 -1.63 16 3 C -0.09 -1.09 2.51 -88.95 -0.22 -1.31 16 4 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 5 C -0.12 -1.24 5.69 -25.62 -0.15 -1.39 16 6 C -0.12 -1.43 6.80 -25.62 -0.17 -1.60 16 7 C -0.14 -1.90 6.08 -25.07 -0.15 -2.06 16 8 C 0.16 2.30 3.02 -65.92 -0.20 2.10 16 9 H 0.10 1.74 6.98 -51.93 -0.36 1.37 16 10 N -1.11 -17.25 4.63 -3.18 -0.01 -17.26 16 11 S 2.79 56.95 5.90 -107.50 -0.63 56.31 16 12 O -0.97 -23.80 16.50 -57.17 -0.94 -24.74 16 13 O -1.00 -21.82 16.69 -57.17 -0.95 -22.77 16 14 N -0.99 -20.07 2.77 -115.66 -0.32 -20.39 16 15 C 0.26 6.27 5.08 -5.19 -0.03 6.24 16 16 C -0.53 -14.54 9.38 -34.44 -0.32 -14.86 16 17 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.90 -25.60 13.29 55.43 0.74 -24.87 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.13 2.18 6.06 -4.04 -0.02 2.15 16 25 C 0.04 0.56 6.28 37.16 0.23 0.79 16 26 O -0.38 -5.15 8.49 -35.23 -0.30 -5.44 16 27 C 0.03 0.33 9.21 101.05 0.93 1.26 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.48 7.62 -51.93 -0.40 0.09 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.86 7.95 -51.93 -0.41 0.45 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.71 7.71 -51.93 -0.40 0.31 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.96 4.23 -51.93 -0.22 0.74 16 38 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 39 H 0.41 5.46 8.82 -34.48 -0.30 5.16 16 40 H 0.04 0.94 7.10 -51.93 -0.37 0.57 16 41 H 0.03 0.76 8.05 -51.94 -0.42 0.34 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.10 1.65 8.11 -51.93 -0.42 1.22 16 44 H 0.08 1.43 6.91 -51.93 -0.36 1.07 16 45 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.04 0.41 7.22 -51.93 -0.37 0.03 16 49 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 394.19 15.07 5.94 5.94 Total: -1.00 -32.55 394.19 -10.14 -42.69 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -8.65 Total: 3.60 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 0.02 Total: -9.75 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: 0.40 Total: -62.52 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -2.20 Total: -52.96 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 56.95 SS G_CDS: -0.63 Total: 56.31 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.55 -10.14 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336940480.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.859 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds