Wall clock time and date at job start Tue Mar 31 2020 17:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46680 * 2 1 4 4 H 1.09000 * 110.54446 * 52.38826 * 3 2 1 5 5 C 1.54261 * 110.48571 * 289.76952 * 3 2 1 6 6 C 1.53872 * 106.59985 * 217.71438 * 5 3 2 7 7 C 1.54263 * 106.60107 * 0.02562 * 6 5 3 8 8 C 1.54891 * 104.19192 * 23.61133 * 7 6 5 9 9 H 1.08997 * 110.91580 * 80.44555 * 8 7 6 10 10 N 1.46506 * 110.75427 * 203.74431 * 8 7 6 11 11 S 1.65605 * 119.99679 * 258.32696 * 10 8 7 12 12 O 1.42102 * 106.40273 * 311.45972 * 11 10 8 13 13 O 1.42102 * 106.39854 * 178.54024 * 11 10 8 14 14 N 1.65595 * 107.21885 * 65.00194 * 11 10 8 15 15 C 1.46505 * 120.00162 * 270.00005 * 14 11 10 16 16 C 1.50704 * 109.46942 * 265.00333 * 15 14 11 17 17 H 1.08005 * 120.00035 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99902 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99882 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99822 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47072 * 60.00146 * 20 18 16 22 22 H 1.48508 * 109.46993 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47567 * 300.00071 * 20 18 16 24 24 C 1.46500 * 120.00362 * 89.99730 * 14 11 10 25 25 C 1.52996 * 109.47197 * 265.00137 * 24 14 11 26 26 O 1.42901 * 109.47091 * 64.99872 * 25 24 14 27 27 C 1.42905 * 114.00134 * 179.97438 * 26 25 24 28 28 H 1.08997 * 109.47526 * 300.00312 * 1 2 3 29 29 H 1.09001 * 109.46868 * 60.00515 * 1 2 3 30 30 H 1.09001 * 109.46712 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47526 * 239.99688 * 2 1 3 32 32 H 1.09001 * 109.46868 * 119.99485 * 2 1 3 33 33 H 1.08998 * 110.03507 * 336.99911 * 5 3 2 34 34 H 1.09005 * 110.03431 * 98.43197 * 5 3 2 35 35 H 1.08997 * 110.03517 * 119.28784 * 6 5 3 36 36 H 1.09005 * 110.03486 * 240.66848 * 6 5 3 37 37 H 1.09000 * 110.48775 * 264.93578 * 7 6 5 38 38 H 1.09003 * 110.48727 * 142.28211 * 7 6 5 39 39 H 0.96995 * 120.00022 * 78.32593 * 10 8 7 40 40 H 1.09000 * 109.46782 * 24.99706 * 15 14 11 41 41 H 1.08989 * 109.47345 * 144.99919 * 15 14 11 42 42 H 0.97005 * 119.99931 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.47119 * 144.99994 * 24 14 11 44 44 H 1.09003 * 109.46694 * 24.99772 * 24 14 11 45 45 H 1.08994 * 109.47303 * 304.99885 * 25 24 14 46 46 H 1.09002 * 109.47060 * 184.99415 * 25 24 14 47 47 H 1.09001 * 109.47103 * 300.00246 * 27 26 25 48 48 H 1.09004 * 109.47054 * 59.99750 * 27 26 25 49 49 H 1.09000 * 109.47187 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5801 2.0108 0.8085 5 6 1.7590 2.1145 -1.3599 6 6 2.9737 3.0073 -1.6683 7 6 3.9507 2.8463 -0.4854 8 6 3.5837 1.4712 0.1258 9 1 4.0334 0.6591 -0.4454 10 7 3.9912 1.4025 1.5314 11 16 5.3689 0.5870 1.9551 12 8 5.3032 -0.6757 1.3067 13 8 5.5042 0.7322 3.3622 14 7 6.6451 1.3952 1.2767 15 6 7.1076 1.0381 -0.0667 16 6 8.2485 0.0591 0.0385 17 1 8.5947 -0.2644 1.0091 18 6 8.8503 -0.4236 -1.1042 19 7 8.4284 -0.0300 -2.2860 20 14 10.2649 -1.6366 -0.9737 21 1 9.8052 -2.8589 -0.2666 22 1 10.7328 -1.9996 -2.3356 23 1 11.3807 -1.0161 -0.2153 24 6 7.3117 2.4674 2.0199 25 6 6.7143 3.8164 1.6150 26 8 5.3447 3.8714 2.0189 27 6 4.6894 5.0971 1.6868 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6466 1.3563 -2.1349 34 1 0.8558 2.7215 -1.2970 35 1 3.4507 2.6824 -2.5930 36 1 2.6599 4.0475 -1.7559 37 1 3.7995 3.6410 0.2451 38 1 4.9815 2.8434 -0.8397 39 1 3.4540 1.8346 2.2137 40 1 6.2887 0.5832 -0.6239 41 1 7.4454 1.9354 -0.5851 42 1 8.8515 -0.3699 -3.0900 43 1 8.3776 2.4590 1.7922 44 1 7.1673 2.3123 3.0892 45 1 6.7789 3.9323 0.5332 46 1 7.2687 4.6197 2.1003 47 1 5.2020 5.9267 2.1739 48 1 4.7121 5.2401 0.6064 49 1 3.6543 5.0594 2.0263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336940480.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:32 Heat of formation + Delta-G solvation = -166.299898 kcal Electronic energy + Delta-G solvation = -30266.865741 eV Core-core repulsion = 26354.070565 eV Total energy + Delta-G solvation = -3912.795177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.89896 -38.97688 -38.12557 -36.99193 -36.75431 -34.67136 -34.55342 -33.76797 -30.97729 -28.54862 -28.34130 -27.95197 -26.92835 -24.79557 -23.45154 -23.07510 -21.61188 -20.83223 -20.04572 -19.00490 -18.36766 -18.08399 -17.65438 -17.26082 -16.85413 -16.39927 -16.16996 -16.11556 -15.69868 -15.18393 -15.07398 -14.58746 -14.49872 -14.25564 -13.97235 -13.83332 -13.77573 -13.48186 -13.22596 -13.07949 -13.06529 -12.93529 -12.78432 -12.70914 -12.60853 -12.48399 -12.34348 -12.23693 -12.09882 -11.95497 -11.79743 -11.70260 -11.62120 -11.41745 -11.26603 -11.11141 -10.57094 -10.43055 -10.13782 -9.73035 -8.18000 -6.29123 -0.16503 1.38848 1.42579 1.49280 2.12972 2.41706 2.69773 3.07803 3.12991 3.54490 3.63394 3.77968 3.91467 4.10074 4.26273 4.30129 4.34151 4.39367 4.42782 4.52841 4.64533 4.66919 4.69063 4.69637 4.75113 4.79420 4.86842 4.89233 4.96906 5.01081 5.03408 5.07604 5.16647 5.20416 5.24044 5.28018 5.30797 5.42051 5.49588 5.52023 5.62828 5.64721 5.74732 5.95038 6.14986 6.36759 6.40927 6.78977 7.39320 8.88774 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010873 B = 0.005210 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.548363 B = 5372.717993 C = 6117.611428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C -0.083 4.083 4 H 0.099 0.901 5 C -0.111 4.111 6 C -0.122 4.122 7 C -0.138 4.138 8 C 0.148 3.852 9 H 0.059 0.941 10 N -1.089 6.089 11 S 2.798 3.202 12 O -1.020 7.020 13 O -1.016 7.016 14 N -0.989 5.989 15 C 0.283 3.717 16 C -0.550 4.550 17 H 0.049 0.951 18 C 0.016 3.984 19 N -0.921 5.921 20 Si 0.951 3.049 21 H -0.281 1.281 22 H -0.277 1.277 23 H -0.263 1.263 24 C 0.118 3.882 25 C 0.050 3.950 26 O -0.401 6.401 27 C 0.026 3.974 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.044 0.956 39 H 0.422 0.578 40 H 0.012 0.988 41 H 0.027 0.973 42 H 0.266 0.734 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.080 0.920 47 H 0.049 0.951 48 H 0.045 0.955 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.113 12.556 3.692 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C -0.104 4.104 4 H 0.117 0.883 5 C -0.149 4.149 6 C -0.160 4.160 7 C -0.177 4.177 8 C 0.040 3.960 9 H 0.077 0.923 10 N -0.851 5.851 11 S 2.806 3.194 12 O -1.003 7.003 13 O -1.000 7.000 14 N -0.830 5.830 15 C 0.159 3.841 16 C -0.589 4.589 17 H 0.068 0.932 18 C -0.184 4.184 19 N -0.561 5.561 20 Si 0.776 3.224 21 H -0.207 1.207 22 H -0.202 1.202 23 H -0.188 1.188 24 C -0.007 4.007 25 C -0.028 4.028 26 O -0.320 6.320 27 C -0.070 4.070 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.063 0.937 39 H 0.258 0.742 40 H 0.030 0.970 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.989 11.489 3.999 18.538 hybrid contribution 1.104 -0.357 -0.341 1.209 sum -12.885 11.131 3.658 17.416 Atomic orbital electron populations 1.21723 0.93809 1.01835 1.02631 1.21620 0.97425 0.96149 1.01139 1.22245 0.92304 0.96353 0.99465 0.88297 1.22150 0.98566 0.98673 0.95514 1.22091 0.95663 1.00902 0.97387 1.22969 0.98761 0.97507 0.98451 1.21834 0.96668 0.97676 0.79811 0.92284 1.55379 1.41951 1.72960 1.14765 1.01091 0.73345 0.73225 0.71721 1.93558 1.87021 1.42202 1.77515 1.93476 1.86937 1.87561 1.32067 1.57452 1.47493 1.49939 1.28084 1.18481 0.93405 0.94510 0.77687 1.21833 1.17619 1.26790 0.92644 0.93224 1.25663 0.99746 0.98032 0.94930 1.69995 1.42940 1.45262 0.97857 0.85724 0.79772 0.79380 0.77516 1.20694 1.20162 1.18755 1.21423 0.98163 0.85044 0.96114 1.22965 0.83202 0.97263 0.99352 1.87855 1.24095 1.38581 1.81490 1.22904 0.98320 0.85848 0.99889 0.91868 0.91507 0.92955 0.93158 0.93623 0.92001 0.89251 0.93049 0.89751 0.88147 0.93719 0.74225 0.97043 0.95453 0.92479 0.88594 0.89659 0.93229 0.90235 0.93283 0.93599 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.79 71.98 0.70 -1.84 16 2 C -0.13 -3.05 5.32 30.60 0.16 -2.89 16 3 C -0.08 -1.86 2.51 -9.71 -0.02 -1.88 16 4 H 0.10 1.80 8.06 -2.39 -0.02 1.78 16 5 C -0.11 -2.10 5.69 31.32 0.18 -1.92 16 6 C -0.12 -2.58 6.80 31.32 0.21 -2.37 16 7 C -0.14 -3.56 6.08 31.67 0.19 -3.37 16 8 C 0.15 4.40 3.02 46.29 0.14 4.54 16 9 H 0.06 2.25 6.98 -2.39 -0.02 2.23 16 10 N -1.09 -33.95 4.63 -163.98 -0.76 -34.71 16 11 S 2.80 118.00 5.90 -56.49 -0.33 117.67 16 12 O -1.02 -52.67 16.50 -128.00 -2.11 -54.79 16 13 O -1.02 -44.74 16.69 -128.00 -2.14 -46.87 16 14 N -0.99 -41.52 2.77 -519.85 -1.44 -42.96 16 15 C 0.28 14.24 5.08 85.63 0.43 14.67 16 16 C -0.55 -31.23 9.38 25.60 0.24 -30.99 16 17 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 18 C 0.02 0.91 5.46 84.65 0.46 1.37 16 19 N -0.92 -53.79 13.29 21.45 0.28 -53.50 16 20 Si 0.95 44.97 29.54 68.60 2.03 46.99 16 21 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 24 C 0.12 4.05 6.06 86.38 0.52 4.58 16 25 C 0.05 1.34 6.28 71.98 0.45 1.79 16 26 O -0.40 -10.01 8.49 -148.98 -1.27 -11.28 16 27 C 0.03 0.45 9.21 113.37 1.04 1.49 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.02 7.62 -2.39 -0.02 1.00 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 1.36 7.95 -2.39 -0.02 1.34 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.24 7.71 -2.39 -0.02 1.22 16 34 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.10 2.16 4.23 -2.39 -0.01 2.15 16 38 H 0.04 1.41 8.12 -2.39 -0.02 1.39 16 39 H 0.42 10.78 8.82 -96.75 -0.85 9.92 16 40 H 0.01 0.64 7.10 -2.39 -0.02 0.62 16 41 H 0.03 1.39 8.05 -2.39 -0.02 1.37 16 42 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 43 H 0.10 3.27 8.11 -2.39 -0.02 3.25 16 44 H 0.09 2.89 6.91 -2.39 -0.02 2.88 16 45 H 0.05 1.40 8.08 -2.39 -0.02 1.38 16 46 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.05 0.76 7.22 -2.38 -0.02 0.74 16 49 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -72.43 394.19 -0.94 -73.37 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.07 Total: 22.89 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.72 Total: -16.82 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -1.91 Total: -131.17 kcal Atomic # 8 Polarization: -107.42 SS G_CDS: -5.51 Total: -112.94 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 118.00 SS G_CDS: -0.33 Total: 117.67 kcal Total: -72.43 -0.94 -73.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336940480.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.930 kcal (2) G-P(sol) polarization free energy of solvation -72.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds