Wall clock time and date at job start Tue Mar 31 2020 17:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47105 * 2 1 4 4 H 1.09005 * 110.05571 * 53.58116 * 3 2 1 5 5 C 1.54259 * 110.03380 * 292.16839 * 3 2 1 6 6 C 1.54888 * 104.19704 * 217.10323 * 5 3 2 7 7 C 1.54897 * 102.74895 * 37.93903 * 6 5 3 8 8 C 1.53876 * 110.03186 * 174.99806 * 3 2 1 9 9 H 1.09000 * 110.07085 * 238.59132 * 8 3 2 10 10 N 1.46499 * 110.03294 * 0.02562 * 8 3 2 11 11 S 1.65597 * 119.99926 * 213.89735 * 10 8 3 12 12 O 1.42096 * 106.40195 * 178.26439 * 11 10 8 13 13 O 1.42108 * 106.40105 * 311.18495 * 11 10 8 14 14 N 1.65605 * 107.21939 * 64.71969 * 11 10 8 15 15 C 1.46494 * 120.00164 * 270.00117 * 14 11 10 16 16 C 1.50697 * 109.47020 * 95.00354 * 15 14 11 17 17 H 1.08002 * 120.00380 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99895 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00339 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00030 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46853 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47503 * 119.99395 * 20 18 16 23 23 H 1.48501 * 109.46748 * 240.00163 * 20 18 16 24 24 C 1.46505 * 119.99527 * 90.00151 * 14 11 10 25 25 C 1.53000 * 109.46995 * 94.99885 * 24 14 11 26 26 O 1.42907 * 109.47071 * 65.00047 * 25 24 14 27 27 C 1.42902 * 113.99768 * 179.97438 * 26 25 24 28 28 H 1.09009 * 109.47027 * 60.00143 * 1 2 3 29 29 H 1.09003 * 109.47270 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47714 * 299.99910 * 1 2 3 31 31 H 1.09001 * 109.47022 * 240.00284 * 2 1 3 32 32 H 1.08993 * 109.47025 * 120.00283 * 2 1 3 33 33 H 1.08999 * 110.49223 * 98.42630 * 5 3 2 34 34 H 1.08998 * 110.49006 * 335.77820 * 5 3 2 35 35 H 1.09004 * 110.75613 * 279.62702 * 6 5 3 36 36 H 1.09003 * 110.76109 * 156.25696 * 6 5 3 37 37 H 1.08993 * 110.48883 * 203.38114 * 7 6 5 38 38 H 1.09008 * 110.59337 * 80.79167 * 7 6 5 39 39 H 0.97001 * 119.99790 * 33.61524 * 10 8 3 40 40 H 1.09004 * 109.47032 * 215.00156 * 15 14 11 41 41 H 1.09000 * 109.47230 * 334.99666 * 15 14 11 42 42 H 0.96996 * 120.00481 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.46767 * 214.99864 * 24 14 11 44 44 H 1.08999 * 109.47434 * 335.00082 * 24 14 11 45 45 H 1.09002 * 109.47466 * 184.99571 * 25 24 14 46 46 H 1.08994 * 109.47438 * 305.00027 * 25 24 14 47 47 H 1.08997 * 109.47450 * 299.99780 * 27 26 25 48 48 H 1.09003 * 109.46657 * 60.00454 * 27 26 25 49 49 H 1.09007 * 109.46318 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9976 0.8240 5 6 1.7006 2.1230 -1.3421 6 6 2.9289 3.0202 -1.6345 7 6 4.1125 2.1497 -1.1439 8 6 3.5735 1.4594 0.1260 9 1 3.8699 2.0222 1.0112 10 7 4.0855 0.0892 0.2076 11 16 5.4201 -0.2424 1.1302 12 8 5.6350 -1.6439 1.0357 13 8 6.4030 0.7204 0.7746 14 7 5.0148 0.0634 2.7065 15 6 5.2254 1.3987 3.2711 16 6 3.9506 2.1955 3.1653 17 1 3.0716 1.7518 2.7215 18 6 3.9068 3.4914 3.6342 19 7 4.9772 4.0319 4.1742 20 14 2.3265 4.4789 3.5038 21 1 1.2755 3.6486 2.8625 22 1 1.8802 4.8806 4.8620 23 1 2.5675 5.6925 2.6827 24 6 4.4457 -1.0014 3.5362 25 6 5.5618 -1.6761 4.3363 26 8 6.1219 -0.7377 5.2572 27 6 7.1785 -1.2699 6.0588 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.7999 2.7292 -1.2456 34 1 1.5773 1.3774 -2.1275 35 1 2.8720 3.9496 -1.0678 36 1 3.0144 3.2221 -2.7022 37 1 4.9718 2.7752 -0.9026 38 1 4.3808 1.4081 -1.8965 39 1 3.6402 -0.6244 -0.2754 40 1 5.5119 1.3090 4.3189 41 1 6.0175 1.9055 2.7199 42 1 4.9462 4.9434 4.5044 43 1 3.7135 -0.5754 4.2220 44 1 3.9595 -1.7390 2.8978 45 1 5.1534 -2.5245 4.8855 46 1 6.3380 -2.0240 3.6549 47 1 6.8032 -2.1096 6.6436 48 1 7.9884 -1.6096 5.4132 49 1 7.5499 -0.4959 6.7305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336940482.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:35 Heat of formation + Delta-G solvation = -136.417326 kcal Electronic energy + Delta-G solvation = -30189.538725 eV Core-core repulsion = 26278.039354 eV Total energy + Delta-G solvation = -3911.499371 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.84614 -37.69131 -36.53248 -35.30430 -35.10530 -33.06163 -32.88244 -32.57079 -29.46677 -27.30939 -26.92135 -26.50981 -25.61520 -22.82552 -22.73548 -21.74248 -20.39960 -19.36386 -18.53439 -17.28339 -16.88337 -16.43081 -15.84190 -15.65708 -15.59518 -15.18710 -14.84763 -14.49766 -14.42982 -14.25628 -13.70849 -13.35189 -13.02335 -12.71658 -12.57206 -12.48996 -12.18767 -12.00280 -11.87612 -11.78397 -11.59905 -11.43560 -11.18575 -11.14259 -11.06290 -11.00679 -10.88908 -10.72394 -10.69977 -10.51414 -10.37492 -10.28682 -10.19634 -10.02680 -10.00422 -9.58186 -9.25491 -8.84198 -8.44507 -7.97105 -6.07639 -4.12845 1.39505 3.24529 3.32946 3.34038 3.63332 4.21127 4.23617 4.37296 4.85650 4.94041 4.98622 5.16059 5.24715 5.36492 5.39049 5.44858 5.47198 5.52007 5.58766 5.69303 5.72838 5.81876 5.82862 5.85938 5.93165 5.95252 5.96774 6.00657 6.04036 6.09039 6.16394 6.25585 6.28609 6.37469 6.42313 6.45656 6.59343 6.67336 6.71500 7.03214 7.43340 7.54188 7.58598 7.66909 7.80926 7.93675 8.22414 8.92194 9.50569 10.99708 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.006371 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.343353 B = 4393.659914 C = 5750.556546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.096 4.096 4 H 0.083 0.917 5 C -0.117 4.117 6 C -0.125 4.125 7 C -0.137 4.137 8 C 0.132 3.868 9 H 0.139 0.861 10 N -1.122 6.122 11 S 2.780 3.220 12 O -1.009 7.009 13 O -0.978 6.978 14 N -0.985 5.985 15 C 0.242 3.758 16 C -0.542 4.542 17 H 0.068 0.932 18 C 0.069 3.931 19 N -0.882 5.882 20 Si 0.884 3.116 21 H -0.269 1.269 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.138 3.862 25 C 0.043 3.957 26 O -0.369 6.369 27 C 0.031 3.969 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.404 0.596 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.263 0.737 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.033 0.967 48 H 0.035 0.965 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 -8.370 -5.557 11.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.116 4.116 4 H 0.101 0.899 5 C -0.155 4.155 6 C -0.163 4.163 7 C -0.176 4.176 8 C 0.026 3.974 9 H 0.157 0.843 10 N -0.881 5.881 11 S 2.788 3.212 12 O -0.993 6.993 13 O -0.961 6.961 14 N -0.826 5.826 15 C 0.120 3.880 16 C -0.581 4.581 17 H 0.086 0.914 18 C -0.135 4.135 19 N -0.519 5.519 20 Si 0.711 3.289 21 H -0.194 1.194 22 H -0.211 1.211 23 H -0.209 1.209 24 C 0.010 3.990 25 C -0.036 4.036 26 O -0.287 6.287 27 C -0.066 4.066 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.238 0.762 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.332 -8.160 -5.666 10.837 hybrid contribution -1.325 0.170 -0.019 1.336 sum -5.657 -7.990 -5.684 11.321 Atomic orbital electron populations 1.21794 0.96312 1.00997 1.01739 1.21544 0.95198 0.96706 1.01755 1.22024 0.95346 0.96168 0.98085 0.89904 1.22432 0.97794 0.98393 0.96878 1.22464 0.94954 0.98600 1.00293 1.22844 0.98285 0.98921 0.97542 1.22090 0.92812 0.81251 1.01296 0.84337 1.56219 1.50977 1.15881 1.65032 1.01881 0.73868 0.72284 0.73155 1.93523 1.85553 1.32924 1.87331 1.93580 1.57202 1.62797 1.82529 1.57615 1.78272 1.19868 1.26873 1.19310 0.96699 0.75008 0.96943 1.21653 0.98015 0.97792 1.40630 0.91405 1.24928 0.96001 0.97621 0.94976 1.69951 1.27972 1.14735 1.39278 0.86679 0.83861 0.80433 0.77910 1.19394 1.21065 1.20860 1.21038 0.94618 0.89154 0.94149 1.23109 0.96901 0.91751 0.91806 1.88104 1.51276 1.37071 1.52245 1.22701 0.90213 0.99101 0.94606 0.92989 0.93261 0.92708 0.92371 0.91273 0.92127 0.91923 0.91234 0.92018 0.90704 0.91810 0.76189 0.92521 0.93555 0.92717 0.89201 0.90391 0.93260 0.93339 0.94823 0.94642 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.77 37.16 0.36 -1.32 16 2 C -0.11 -1.44 3.98 -26.73 -0.11 -1.54 16 3 C -0.10 -1.42 2.93 -89.50 -0.26 -1.68 16 4 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 5 C -0.12 -1.49 5.53 -25.08 -0.14 -1.63 16 6 C -0.13 -1.71 6.91 -24.73 -0.17 -1.88 16 7 C -0.14 -2.18 6.53 -25.07 -0.16 -2.35 16 8 C 0.13 2.26 3.14 -66.81 -0.21 2.05 16 9 H 0.14 2.86 4.28 -51.93 -0.22 2.64 16 10 N -1.12 -18.37 4.66 -3.94 -0.02 -18.39 16 11 S 2.78 54.91 6.02 -107.50 -0.65 54.26 16 12 O -1.01 -20.31 17.11 -57.17 -0.98 -21.29 16 13 O -0.98 -22.84 16.46 -57.17 -0.94 -23.78 16 14 N -0.99 -19.97 2.81 -115.67 -0.33 -20.29 16 15 C 0.24 5.91 5.15 -5.20 -0.03 5.88 16 16 C -0.54 -13.41 6.90 -34.44 -0.24 -13.65 16 17 H 0.07 1.59 6.93 -52.49 -0.36 1.22 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.88 -24.69 13.29 55.43 0.74 -23.95 16 20 Si 0.88 19.95 29.54 -169.99 -5.02 14.92 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 24 C 0.14 2.37 5.79 -4.04 -0.02 2.34 16 25 C 0.04 0.71 6.28 37.16 0.23 0.94 16 26 O -0.37 -6.80 9.02 -35.23 -0.32 -7.12 16 27 C 0.03 0.44 11.01 101.05 1.11 1.55 16 28 H 0.05 0.54 7.51 -51.92 -0.39 0.15 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.66 7.04 -51.93 -0.37 0.29 16 32 H 0.07 0.91 7.52 -51.93 -0.39 0.52 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.72 7.76 -51.93 -0.40 0.32 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 0.95 8.05 -51.92 -0.42 0.53 16 39 H 0.40 5.55 6.45 -34.47 -0.22 5.32 16 40 H 0.06 1.50 6.60 -51.93 -0.34 1.15 16 41 H 0.05 1.27 6.91 -51.93 -0.36 0.91 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 43 H 0.09 1.56 8.11 -51.93 -0.42 1.14 16 44 H 0.08 1.14 7.61 -51.93 -0.40 0.74 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -30.76 390.41 -9.86 -40.62 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -8.50 Total: 8.73 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 0.27 Total: -9.59 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 0.39 Total: -62.64 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -2.24 Total: -52.19 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 54.91 SS G_CDS: -0.65 Total: 54.26 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.76 -9.86 -40.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336940482.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.801 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds