Wall clock time and date at job start Tue Mar 31 2020 17:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47105 * 2 1 4 4 H 1.09005 * 110.05571 * 53.58116 * 3 2 1 5 5 C 1.54259 * 110.03380 * 292.16839 * 3 2 1 6 6 C 1.54888 * 104.19704 * 217.10323 * 5 3 2 7 7 C 1.54897 * 102.74895 * 37.93903 * 6 5 3 8 8 C 1.53876 * 110.03186 * 174.99806 * 3 2 1 9 9 H 1.09000 * 110.07085 * 238.59132 * 8 3 2 10 10 N 1.46499 * 110.03294 * 0.02562 * 8 3 2 11 11 S 1.65597 * 119.99926 * 213.89735 * 10 8 3 12 12 O 1.42096 * 106.40195 * 178.26439 * 11 10 8 13 13 O 1.42108 * 106.40105 * 311.18495 * 11 10 8 14 14 N 1.65605 * 107.21939 * 64.71969 * 11 10 8 15 15 C 1.46494 * 120.00164 * 270.00117 * 14 11 10 16 16 C 1.50697 * 109.47020 * 95.00354 * 15 14 11 17 17 H 1.08002 * 120.00380 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99895 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00339 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00030 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46853 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47503 * 119.99395 * 20 18 16 23 23 H 1.48501 * 109.46748 * 240.00163 * 20 18 16 24 24 C 1.46505 * 119.99527 * 90.00151 * 14 11 10 25 25 C 1.53000 * 109.46995 * 94.99885 * 24 14 11 26 26 O 1.42907 * 109.47071 * 65.00047 * 25 24 14 27 27 C 1.42902 * 113.99768 * 179.97438 * 26 25 24 28 28 H 1.09009 * 109.47027 * 60.00143 * 1 2 3 29 29 H 1.09003 * 109.47270 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47714 * 299.99910 * 1 2 3 31 31 H 1.09001 * 109.47022 * 240.00284 * 2 1 3 32 32 H 1.08993 * 109.47025 * 120.00283 * 2 1 3 33 33 H 1.08999 * 110.49223 * 98.42630 * 5 3 2 34 34 H 1.08998 * 110.49006 * 335.77820 * 5 3 2 35 35 H 1.09004 * 110.75613 * 279.62702 * 6 5 3 36 36 H 1.09003 * 110.76109 * 156.25696 * 6 5 3 37 37 H 1.08993 * 110.48883 * 203.38114 * 7 6 5 38 38 H 1.09008 * 110.59337 * 80.79167 * 7 6 5 39 39 H 0.97001 * 119.99790 * 33.61524 * 10 8 3 40 40 H 1.09004 * 109.47032 * 215.00156 * 15 14 11 41 41 H 1.09000 * 109.47230 * 334.99666 * 15 14 11 42 42 H 0.96996 * 120.00481 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.46767 * 214.99864 * 24 14 11 44 44 H 1.08999 * 109.47434 * 335.00082 * 24 14 11 45 45 H 1.09002 * 109.47466 * 184.99571 * 25 24 14 46 46 H 1.08994 * 109.47438 * 305.00027 * 25 24 14 47 47 H 1.08997 * 109.47450 * 299.99780 * 27 26 25 48 48 H 1.09003 * 109.46657 * 60.00454 * 27 26 25 49 49 H 1.09007 * 109.46318 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9976 0.8240 5 6 1.7006 2.1230 -1.3421 6 6 2.9289 3.0202 -1.6345 7 6 4.1125 2.1497 -1.1439 8 6 3.5735 1.4594 0.1260 9 1 3.8699 2.0222 1.0112 10 7 4.0855 0.0892 0.2076 11 16 5.4201 -0.2424 1.1302 12 8 5.6350 -1.6439 1.0357 13 8 6.4030 0.7204 0.7746 14 7 5.0148 0.0634 2.7065 15 6 5.2254 1.3987 3.2711 16 6 3.9506 2.1955 3.1653 17 1 3.0716 1.7518 2.7215 18 6 3.9068 3.4914 3.6342 19 7 4.9772 4.0319 4.1742 20 14 2.3265 4.4789 3.5038 21 1 1.2755 3.6486 2.8625 22 1 1.8802 4.8806 4.8620 23 1 2.5675 5.6925 2.6827 24 6 4.4457 -1.0014 3.5362 25 6 5.5618 -1.6761 4.3363 26 8 6.1219 -0.7377 5.2572 27 6 7.1785 -1.2699 6.0588 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.7999 2.7292 -1.2456 34 1 1.5773 1.3774 -2.1275 35 1 2.8720 3.9496 -1.0678 36 1 3.0144 3.2221 -2.7022 37 1 4.9718 2.7752 -0.9026 38 1 4.3808 1.4081 -1.8965 39 1 3.6402 -0.6244 -0.2754 40 1 5.5119 1.3090 4.3189 41 1 6.0175 1.9055 2.7199 42 1 4.9462 4.9434 4.5044 43 1 3.7135 -0.5754 4.2220 44 1 3.9595 -1.7390 2.8978 45 1 5.1534 -2.5245 4.8855 46 1 6.3380 -2.0240 3.6549 47 1 6.8032 -2.1096 6.6436 48 1 7.9884 -1.6096 5.4132 49 1 7.5499 -0.4959 6.7305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336940482.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:34 Heat of formation + Delta-G solvation = -157.731084 kcal Electronic energy + Delta-G solvation = -30190.462959 eV Core-core repulsion = 26278.039354 eV Total energy + Delta-G solvation = -3912.423605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.05584 -39.05317 -38.21384 -36.93745 -36.81744 -34.53951 -34.31848 -33.92221 -31.03135 -28.53030 -28.38050 -27.83535 -26.97694 -24.59122 -23.78211 -23.25426 -21.58833 -20.72868 -19.93586 -18.88184 -18.51486 -18.22529 -17.30401 -17.05058 -16.97958 -16.55114 -16.24135 -16.11264 -15.77264 -15.33825 -15.12496 -14.72657 -14.45586 -14.07102 -13.95756 -13.84471 -13.59302 -13.49860 -13.34465 -13.18513 -13.13522 -12.93208 -12.82236 -12.68933 -12.52845 -12.39979 -12.23971 -12.10690 -11.96014 -11.82944 -11.81434 -11.74119 -11.62490 -11.33778 -11.20966 -11.11666 -10.56402 -10.46179 -10.23967 -9.68664 -8.08843 -6.19518 -0.21714 1.43881 1.46145 1.56247 2.07017 2.46671 2.67520 2.99461 3.22310 3.51938 3.69158 3.79895 3.94697 4.02482 4.21104 4.33955 4.40260 4.43163 4.48775 4.51867 4.55230 4.58888 4.62045 4.73028 4.75274 4.84160 4.86818 4.88815 4.93202 4.94617 5.06584 5.11076 5.11690 5.19573 5.29717 5.35440 5.43984 5.49559 5.55570 5.58569 5.67121 5.70636 5.83887 5.97560 6.21158 6.33489 6.40392 6.92411 7.47431 8.99435 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.006371 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.343353 B = 4393.659914 C = 5750.556546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.094 4.094 4 H 0.063 0.937 5 C -0.109 4.109 6 C -0.122 4.122 7 C -0.140 4.140 8 C 0.127 3.873 9 H 0.101 0.899 10 N -1.104 6.104 11 S 2.792 3.208 12 O -1.010 7.010 13 O -1.019 7.019 14 N -0.989 5.989 15 C 0.264 3.736 16 C -0.530 4.530 17 H 0.082 0.918 18 C 0.015 3.985 19 N -0.927 5.927 20 Si 0.944 3.056 21 H -0.248 1.248 22 H -0.287 1.287 23 H -0.284 1.284 24 C 0.128 3.872 25 C 0.040 3.960 26 O -0.407 6.407 27 C 0.025 3.975 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.420 0.580 40 H 0.032 0.968 41 H 0.006 0.994 42 H 0.262 0.738 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.040 0.960 47 H 0.061 0.939 48 H 0.039 0.961 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 -10.042 -7.031 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.114 4.114 4 H 0.081 0.919 5 C -0.146 4.146 6 C -0.160 4.160 7 C -0.179 4.179 8 C 0.020 3.980 9 H 0.118 0.882 10 N -0.867 5.867 11 S 2.801 3.199 12 O -0.994 6.994 13 O -1.002 7.002 14 N -0.829 5.829 15 C 0.140 3.860 16 C -0.569 4.569 17 H 0.100 0.900 18 C -0.185 4.185 19 N -0.567 5.567 20 Si 0.770 3.230 21 H -0.171 1.171 22 H -0.214 1.214 23 H -0.210 1.210 24 C 0.002 3.998 25 C -0.038 4.038 26 O -0.327 6.327 27 C -0.071 4.071 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.258 0.742 40 H 0.050 0.950 41 H 0.025 0.975 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.105 0.895 46 H 0.058 0.942 47 H 0.079 0.921 48 H 0.058 0.942 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.129 -9.885 -7.146 14.128 hybrid contribution -0.389 0.610 0.436 0.844 sum -7.518 -9.275 -6.711 13.696 Atomic orbital electron populations 1.21758 0.94879 1.02003 1.01822 1.21563 0.96448 0.95055 1.02217 1.21991 0.92843 0.97832 0.98777 0.91854 1.22421 0.97552 0.98614 0.96054 1.22466 0.94241 0.97799 1.01492 1.22843 0.98378 0.99261 0.97465 1.22007 0.94985 0.80776 1.00234 0.88164 1.55813 1.50053 1.16382 1.64477 1.01328 0.73939 0.71611 0.73051 1.93511 1.85865 1.32636 1.87372 1.93532 1.59433 1.64108 1.83158 1.57469 1.78788 1.19079 1.27547 1.18750 0.95557 0.76818 0.94871 1.21891 0.98223 0.97651 1.39138 0.90028 1.25734 0.98909 0.98924 0.94931 1.70098 1.30318 1.15069 1.41173 0.85709 0.80670 0.79014 0.77647 1.17102 1.21357 1.21047 1.21361 0.95061 0.88875 0.94490 1.23197 0.96406 0.92343 0.91865 1.88053 1.52558 1.38982 1.53096 1.22881 0.89594 1.00082 0.94591 0.91822 0.91835 0.93737 0.90592 0.92147 0.90792 0.89694 0.92444 0.89620 0.93613 0.90413 0.74212 0.95012 0.97548 0.92934 0.89543 0.87296 0.89546 0.94207 0.92061 0.94191 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.77 71.98 0.70 -2.04 16 2 C -0.11 -2.52 3.98 30.59 0.12 -2.40 16 3 C -0.09 -2.56 2.93 -10.07 -0.03 -2.59 16 4 H 0.06 1.97 8.14 -2.38 -0.02 1.96 16 5 C -0.11 -2.39 5.53 31.67 0.18 -2.22 16 6 C -0.12 -3.08 6.91 31.89 0.22 -2.86 16 7 C -0.14 -4.40 6.53 31.67 0.21 -4.19 16 8 C 0.13 4.27 3.14 45.72 0.14 4.41 16 9 H 0.10 4.24 4.28 -2.39 -0.01 4.23 16 10 N -1.10 -34.98 4.66 -166.38 -0.78 -35.75 16 11 S 2.79 110.91 6.02 -56.49 -0.34 110.57 16 12 O -1.01 -39.56 17.11 -128.00 -2.19 -41.75 16 13 O -1.02 -49.51 16.46 -128.00 -2.11 -51.62 16 14 N -0.99 -40.74 2.81 -519.86 -1.46 -42.20 16 15 C 0.26 13.48 5.15 85.63 0.44 13.92 16 16 C -0.53 -26.91 6.90 25.60 0.18 -26.73 16 17 H 0.08 3.83 6.93 -2.91 -0.02 3.81 16 18 C 0.01 0.78 5.46 84.66 0.46 1.24 16 19 N -0.93 -54.15 13.29 21.45 0.28 -53.87 16 20 Si 0.94 41.39 29.54 68.60 2.03 43.42 16 21 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 22 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 C 0.13 4.30 5.79 86.38 0.50 4.80 16 25 C 0.04 1.28 6.28 71.98 0.45 1.73 16 26 O -0.41 -15.20 9.02 -148.98 -1.34 -16.54 16 27 C 0.02 0.69 11.01 113.37 1.25 1.94 16 28 H 0.06 1.04 7.51 -2.38 -0.02 1.02 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.40 7.04 -2.39 -0.02 1.38 16 32 H 0.06 1.43 7.52 -2.39 -0.02 1.41 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.53 7.76 -2.39 -0.02 1.51 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 2.19 8.05 -2.38 -0.02 2.17 16 39 H 0.42 10.51 6.45 -96.74 -0.62 9.88 16 40 H 0.03 1.78 6.60 -2.39 -0.02 1.76 16 41 H 0.01 0.38 6.91 -2.39 -0.02 0.36 16 42 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 43 H 0.09 2.96 8.11 -2.39 -0.02 2.94 16 44 H 0.11 2.93 7.61 -2.39 -0.02 2.91 16 45 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -69.46 390.41 -0.78 -70.24 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: 0.30 Total: 32.49 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 4.82 Total: -14.99 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -1.95 Total: -131.82 kcal Atomic # 8 Polarization: -104.27 SS G_CDS: -5.64 Total: -109.91 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 110.91 SS G_CDS: -0.34 Total: 110.57 kcal Total: -69.46 -0.78 -70.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336940482.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.492 kcal (2) G-P(sol) polarization free energy of solvation -69.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds