Wall clock time and date at job start Tue Mar 31 2020 17:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46998 * 2 1 4 4 H 1.09001 * 110.81103 * 303.08373 * 3 2 1 5 5 C 1.54891 * 110.75836 * 66.42147 * 3 2 1 6 6 C 1.54262 * 104.19599 * 156.25609 * 5 3 2 7 7 C 1.53868 * 106.59949 * 336.39092 * 6 5 3 8 8 C 1.54273 * 106.60128 * 359.97438 * 7 6 5 9 9 H 1.09004 * 110.48525 * 264.80331 * 8 7 6 10 10 N 1.46497 * 110.48582 * 142.29003 * 8 7 6 11 11 S 1.65601 * 120.00036 * 94.03252 * 10 8 7 12 12 O 1.42100 * 106.40033 * 180.19210 * 11 10 8 13 13 O 1.42100 * 106.40153 * 313.11468 * 11 10 8 14 14 N 1.65602 * 107.21728 * 66.65425 * 11 10 8 15 15 C 1.46501 * 119.99636 * 262.21151 * 14 11 10 16 16 C 1.50698 * 109.47370 * 95.00186 * 15 14 11 17 17 H 1.07998 * 119.99842 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00008 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00235 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99879 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47160 * 59.99871 * 20 18 16 22 22 H 1.48507 * 109.46982 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47170 * 299.99769 * 20 18 16 24 24 C 1.46491 * 120.00315 * 82.21124 * 14 11 10 25 25 C 1.53008 * 109.47257 * 94.05541 * 24 14 11 26 26 O 1.42902 * 109.46588 * 63.69080 * 25 24 14 27 27 C 1.42895 * 113.99400 * 184.91924 * 26 25 24 28 28 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47659 * 300.00410 * 1 2 3 30 30 H 1.09001 * 109.47007 * 60.00623 * 1 2 3 31 31 H 1.08997 * 109.47659 * 239.99590 * 2 1 3 32 32 H 1.09001 * 109.47007 * 119.99377 * 2 1 3 33 33 H 1.08999 * 110.48388 * 37.57342 * 5 3 2 34 34 H 1.09001 * 110.48399 * 274.94066 * 5 3 2 35 35 H 1.09003 * 110.02790 * 95.67578 * 6 5 3 36 36 H 1.09000 * 110.03115 * 217.05209 * 6 5 3 37 37 H 1.08998 * 110.03426 * 119.28381 * 7 6 5 38 38 H 1.09001 * 110.03527 * 240.66690 * 7 6 5 39 39 H 0.97003 * 120.00164 * 274.02825 * 10 8 7 40 40 H 1.09006 * 109.47223 * 215.00155 * 15 14 11 41 41 H 1.08999 * 109.47167 * 334.99688 * 15 14 11 42 42 H 0.96995 * 119.99895 * 180.02562 * 19 18 16 43 43 H 1.08993 * 109.47543 * 214.06172 * 24 14 11 44 44 H 1.09000 * 109.47219 * 334.05962 * 24 14 11 45 45 H 1.08995 * 109.46919 * 183.69067 * 25 24 14 46 46 H 1.08997 * 109.46845 * 303.68888 * 25 24 14 47 47 H 1.09005 * 109.47322 * 304.92370 * 27 26 25 48 48 H 1.08994 * 109.47899 * 64.92891 * 27 26 25 49 49 H 1.09004 * 109.46658 * 184.93179 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6447 1.9931 -0.8537 5 6 1.6767 2.1532 1.3274 6 6 2.7180 3.2850 1.4479 7 6 3.9335 2.8553 0.6079 8 6 3.5887 1.4770 0.0068 9 1 3.9880 0.6778 0.6314 10 7 4.1095 1.3681 -1.3581 11 16 5.5935 0.6837 -1.6261 12 8 5.8093 0.7303 -3.0298 13 8 6.4813 1.2688 -0.6833 14 7 5.4742 -0.9184 -1.2242 15 6 5.9245 -1.3790 0.0915 16 6 4.7513 -1.4252 1.0363 17 1 3.7686 -1.1396 0.6912 18 6 4.9325 -1.8321 2.3411 19 7 6.1292 -2.1804 2.7612 20 14 3.4784 -1.8886 3.5123 21 1 2.4533 -2.8241 2.9838 22 1 3.9347 -2.3568 4.8457 23 1 2.8912 -0.5305 3.6383 24 6 4.9183 -1.8750 -2.1844 25 6 6.0556 -2.5150 -2.9833 26 8 6.8923 -3.2668 -2.1019 27 6 8.0520 -3.8169 -2.7300 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.7649 1.4628 2.1663 34 1 0.6691 2.5657 1.2760 35 1 2.3049 4.2154 1.0581 36 1 3.0102 3.4143 2.4900 37 1 4.1103 3.5771 -0.1895 38 1 4.8165 2.7762 1.2421 39 1 3.5851 1.6969 -2.1050 40 1 6.3563 -2.3756 -0.0005 41 1 6.6764 -0.6918 0.4793 42 1 6.2565 -2.4670 3.6790 43 1 4.3694 -2.6497 -1.6492 44 1 4.2435 -1.3560 -2.8651 45 1 5.6387 -3.1775 -3.7418 46 1 6.6442 -1.7350 -3.4660 47 1 7.7500 -4.4179 -3.5878 48 1 8.7026 -3.0086 -3.0636 49 1 8.5878 -4.4442 -2.0176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336940485.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:41 Heat of formation + Delta-G solvation = -143.928673 kcal Electronic energy + Delta-G solvation = -30200.946428 eV Core-core repulsion = 26289.121341 eV Total energy + Delta-G solvation = -3911.825087 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.64940 -37.68620 -36.51990 -35.28464 -35.11064 -33.44208 -32.66316 -32.52027 -29.45753 -27.33533 -26.93318 -26.56553 -25.61050 -22.85360 -22.35958 -21.77437 -20.09079 -19.94026 -18.57207 -17.12031 -16.85413 -16.49861 -16.02767 -15.76259 -15.60078 -15.00732 -14.77464 -14.46457 -14.38256 -14.22808 -13.55321 -13.16207 -13.04288 -12.78234 -12.72568 -12.51282 -12.20630 -11.98677 -11.87878 -11.71087 -11.58985 -11.48632 -11.31443 -11.15055 -11.11785 -11.03182 -10.90348 -10.84318 -10.66042 -10.56568 -10.33676 -10.24339 -10.16050 -10.06844 -9.95788 -9.45076 -9.23880 -8.88479 -8.40611 -7.95781 -6.04089 -4.09442 1.37113 3.27101 3.32407 3.33937 3.60429 4.21544 4.22490 4.39505 4.78987 4.91771 5.02445 5.17640 5.28980 5.38776 5.40067 5.46253 5.50004 5.58229 5.60033 5.71057 5.74267 5.74666 5.81738 5.83195 5.86276 5.92787 5.97132 5.98897 5.99698 6.11055 6.20918 6.28350 6.34694 6.36947 6.41728 6.55730 6.58997 6.60518 6.76911 6.96899 7.40731 7.56209 7.59582 7.64912 7.83460 7.96671 8.25824 8.94799 9.54243 11.03736 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009929 B = 0.006355 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.479851 B = 4404.651752 C = 5652.002624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.090 4.090 4 H 0.073 0.927 5 C -0.120 4.120 6 C -0.121 4.121 7 C -0.140 4.140 8 C 0.135 3.865 9 H 0.136 0.864 10 N -1.122 6.122 11 S 2.780 3.220 12 O -1.008 7.008 13 O -0.974 6.974 14 N -0.985 5.985 15 C 0.245 3.755 16 C -0.545 4.545 17 H 0.071 0.929 18 C 0.069 3.931 19 N -0.884 5.884 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.272 1.272 24 C 0.138 3.862 25 C 0.041 3.959 26 O -0.369 6.369 27 C 0.031 3.969 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.403 0.597 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.263 0.737 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.033 0.967 48 H 0.035 0.965 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.527 3.804 -8.108 11.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.110 4.110 4 H 0.091 0.909 5 C -0.158 4.158 6 C -0.159 4.159 7 C -0.179 4.179 8 C 0.028 3.972 9 H 0.153 0.847 10 N -0.878 5.878 11 S 2.788 3.212 12 O -0.992 6.992 13 O -0.957 6.957 14 N -0.826 5.826 15 C 0.123 3.877 16 C -0.584 4.584 17 H 0.089 0.911 18 C -0.134 4.134 19 N -0.522 5.522 20 Si 0.707 3.293 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.197 1.197 24 C 0.011 3.989 25 C -0.037 4.037 26 O -0.287 6.287 27 C -0.066 4.066 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.534 4.089 -7.894 11.033 hybrid contribution -1.254 -0.121 0.233 1.281 sum -7.788 3.969 -7.661 11.623 Atomic orbital electron populations 1.21778 0.96534 1.01194 1.01162 1.21590 0.94924 0.95926 1.03340 1.22344 0.94710 0.96188 0.97725 0.90866 1.22396 0.98175 0.97526 0.97722 1.22068 0.95759 0.97922 1.00153 1.22613 0.98536 0.97197 0.99563 1.22236 0.93635 0.99282 0.82002 0.84714 1.56070 1.40493 1.77449 1.13814 1.01913 0.73484 0.73433 0.72381 1.93531 1.85187 1.87627 1.32861 1.93585 1.62414 1.76085 1.63654 1.57626 1.76576 1.22906 1.25468 1.19289 0.95167 0.97917 0.75349 1.21677 0.95503 1.45876 0.95347 0.91130 1.24900 0.95394 0.95138 0.98001 1.69931 1.21159 1.43871 1.17200 0.86857 0.83136 0.78747 0.80539 1.20112 1.21336 1.19689 1.21028 0.93571 0.93499 0.90807 1.23133 0.93432 0.94509 0.92666 1.88088 1.35432 1.69715 1.35478 1.22695 0.88501 0.97470 0.97917 0.93069 0.92963 0.93319 0.91577 0.90787 0.91073 0.91945 0.92371 0.91901 0.91910 0.90634 0.76523 0.92609 0.93548 0.92684 0.89144 0.90728 0.93334 0.92999 0.94837 0.94591 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.76 37.16 0.36 -1.41 16 2 C -0.12 -1.73 4.75 -26.73 -0.13 -1.85 16 3 C -0.09 -1.24 2.55 -88.61 -0.23 -1.47 16 4 H 0.07 0.89 8.04 -51.93 -0.42 0.48 16 5 C -0.12 -1.61 5.47 -25.07 -0.14 -1.74 16 6 C -0.12 -1.62 6.80 -25.62 -0.17 -1.80 16 7 C -0.14 -2.22 6.54 -25.61 -0.17 -2.39 16 8 C 0.14 2.26 2.80 -66.26 -0.19 2.07 16 9 H 0.14 2.72 4.49 -51.93 -0.23 2.48 16 10 N -1.12 -17.93 5.60 -3.47 -0.02 -17.95 16 11 S 2.78 54.74 6.02 -107.50 -0.65 54.10 16 12 O -1.01 -20.32 17.08 -57.17 -0.98 -21.29 16 13 O -0.97 -22.84 16.30 -57.17 -0.93 -23.77 16 14 N -0.98 -19.88 2.80 -115.67 -0.32 -20.20 16 15 C 0.24 5.99 5.22 -5.19 -0.03 5.97 16 16 C -0.54 -13.56 7.53 -34.44 -0.26 -13.81 16 17 H 0.07 1.61 4.60 -52.49 -0.24 1.37 16 18 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 19 N -0.88 -25.00 13.29 55.43 0.74 -24.26 16 20 Si 0.88 20.02 29.54 -169.99 -5.02 14.99 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 C 0.14 2.35 5.78 -4.04 -0.02 2.32 16 25 C 0.04 0.68 6.29 37.16 0.23 0.91 16 26 O -0.37 -6.80 9.04 -35.23 -0.32 -7.12 16 27 C 0.03 0.44 11.01 101.05 1.11 1.56 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.60 7.41 -51.93 -0.38 0.21 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.25 6.87 -51.93 -0.36 0.89 16 33 H 0.07 1.06 8.01 -51.93 -0.42 0.64 16 34 H 0.06 0.71 8.02 -51.93 -0.42 0.29 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.40 5.24 8.74 -34.47 -0.30 4.94 16 40 H 0.06 1.48 6.66 -51.93 -0.35 1.13 16 41 H 0.05 1.28 6.87 -51.93 -0.36 0.92 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 44 H 0.07 1.05 7.85 -51.93 -0.41 0.64 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.88 7.79 -51.93 -0.40 0.47 16 47 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 392.16 15.07 5.91 5.91 Total: -1.00 -31.06 392.16 -9.79 -40.85 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.48 Total: 8.67 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 0.28 Total: -9.92 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.39 Total: -62.42 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -2.23 Total: -52.18 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 54.74 SS G_CDS: -0.65 Total: 54.10 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.06 -9.79 -40.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336940485.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.079 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds