Wall clock time and date at job start Tue Mar 31 2020 17:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46998 * 2 1 4 4 H 1.09001 * 110.81103 * 303.08373 * 3 2 1 5 5 C 1.54891 * 110.75836 * 66.42147 * 3 2 1 6 6 C 1.54262 * 104.19599 * 156.25609 * 5 3 2 7 7 C 1.53868 * 106.59949 * 336.39092 * 6 5 3 8 8 C 1.54273 * 106.60128 * 359.97438 * 7 6 5 9 9 H 1.09004 * 110.48525 * 264.80331 * 8 7 6 10 10 N 1.46497 * 110.48582 * 142.29003 * 8 7 6 11 11 S 1.65601 * 120.00036 * 94.03252 * 10 8 7 12 12 O 1.42100 * 106.40033 * 180.19210 * 11 10 8 13 13 O 1.42100 * 106.40153 * 313.11468 * 11 10 8 14 14 N 1.65602 * 107.21728 * 66.65425 * 11 10 8 15 15 C 1.46501 * 119.99636 * 262.21151 * 14 11 10 16 16 C 1.50698 * 109.47370 * 95.00186 * 15 14 11 17 17 H 1.07998 * 119.99842 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00008 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00235 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99879 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47160 * 59.99871 * 20 18 16 22 22 H 1.48507 * 109.46982 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47170 * 299.99769 * 20 18 16 24 24 C 1.46491 * 120.00315 * 82.21124 * 14 11 10 25 25 C 1.53008 * 109.47257 * 94.05541 * 24 14 11 26 26 O 1.42902 * 109.46588 * 63.69080 * 25 24 14 27 27 C 1.42895 * 113.99400 * 184.91924 * 26 25 24 28 28 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47659 * 300.00410 * 1 2 3 30 30 H 1.09001 * 109.47007 * 60.00623 * 1 2 3 31 31 H 1.08997 * 109.47659 * 239.99590 * 2 1 3 32 32 H 1.09001 * 109.47007 * 119.99377 * 2 1 3 33 33 H 1.08999 * 110.48388 * 37.57342 * 5 3 2 34 34 H 1.09001 * 110.48399 * 274.94066 * 5 3 2 35 35 H 1.09003 * 110.02790 * 95.67578 * 6 5 3 36 36 H 1.09000 * 110.03115 * 217.05209 * 6 5 3 37 37 H 1.08998 * 110.03426 * 119.28381 * 7 6 5 38 38 H 1.09001 * 110.03527 * 240.66690 * 7 6 5 39 39 H 0.97003 * 120.00164 * 274.02825 * 10 8 7 40 40 H 1.09006 * 109.47223 * 215.00155 * 15 14 11 41 41 H 1.08999 * 109.47167 * 334.99688 * 15 14 11 42 42 H 0.96995 * 119.99895 * 180.02562 * 19 18 16 43 43 H 1.08993 * 109.47543 * 214.06172 * 24 14 11 44 44 H 1.09000 * 109.47219 * 334.05962 * 24 14 11 45 45 H 1.08995 * 109.46919 * 183.69067 * 25 24 14 46 46 H 1.08997 * 109.46845 * 303.68888 * 25 24 14 47 47 H 1.09005 * 109.47322 * 304.92370 * 27 26 25 48 48 H 1.08994 * 109.47899 * 64.92891 * 27 26 25 49 49 H 1.09004 * 109.46658 * 184.93179 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6447 1.9931 -0.8537 5 6 1.6767 2.1532 1.3274 6 6 2.7180 3.2850 1.4479 7 6 3.9335 2.8553 0.6079 8 6 3.5887 1.4770 0.0068 9 1 3.9880 0.6778 0.6314 10 7 4.1095 1.3681 -1.3581 11 16 5.5935 0.6837 -1.6261 12 8 5.8093 0.7303 -3.0298 13 8 6.4813 1.2688 -0.6833 14 7 5.4742 -0.9184 -1.2242 15 6 5.9245 -1.3790 0.0915 16 6 4.7513 -1.4252 1.0363 17 1 3.7686 -1.1396 0.6912 18 6 4.9325 -1.8321 2.3411 19 7 6.1292 -2.1804 2.7612 20 14 3.4784 -1.8886 3.5123 21 1 2.4533 -2.8241 2.9838 22 1 3.9347 -2.3568 4.8457 23 1 2.8912 -0.5305 3.6383 24 6 4.9183 -1.8750 -2.1844 25 6 6.0556 -2.5150 -2.9833 26 8 6.8923 -3.2668 -2.1019 27 6 8.0520 -3.8169 -2.7300 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.7649 1.4628 2.1663 34 1 0.6691 2.5657 1.2760 35 1 2.3049 4.2154 1.0581 36 1 3.0102 3.4143 2.4900 37 1 4.1103 3.5771 -0.1895 38 1 4.8165 2.7762 1.2421 39 1 3.5851 1.6969 -2.1050 40 1 6.3563 -2.3756 -0.0005 41 1 6.6764 -0.6918 0.4793 42 1 6.2565 -2.4670 3.6790 43 1 4.3694 -2.6497 -1.6492 44 1 4.2435 -1.3560 -2.8651 45 1 5.6387 -3.1775 -3.7418 46 1 6.6442 -1.7350 -3.4660 47 1 7.7500 -4.4179 -3.5878 48 1 8.7026 -3.0086 -3.0636 49 1 8.5878 -4.4442 -2.0176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336940485.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:40 Heat of formation + Delta-G solvation = -166.110096 kcal Electronic energy + Delta-G solvation = -30201.908287 eV Core-core repulsion = 26289.121341 eV Total energy + Delta-G solvation = -3912.786946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.84835 -39.04652 -38.19679 -36.91737 -36.81472 -34.69142 -34.49299 -33.76262 -31.01979 -28.51724 -28.39956 -27.90809 -26.97867 -24.59819 -23.46378 -23.29591 -21.36703 -21.15907 -20.05724 -18.67641 -18.52108 -18.18406 -17.52440 -17.13913 -17.03420 -16.49225 -16.13065 -16.00208 -15.77379 -15.30405 -15.07899 -14.46209 -14.40253 -14.19434 -14.04085 -13.81408 -13.73948 -13.48838 -13.38521 -13.16990 -13.12159 -12.89834 -12.75966 -12.71712 -12.63499 -12.50805 -12.36237 -12.19262 -12.00249 -11.96396 -11.87768 -11.72006 -11.55833 -11.22745 -11.19070 -11.02377 -10.54835 -10.44161 -10.23449 -9.67176 -8.07224 -6.17997 -0.23174 1.44606 1.46095 1.51844 2.06454 2.47098 2.67231 3.00178 3.24511 3.52034 3.64190 3.77115 3.93674 4.03167 4.22109 4.33120 4.41601 4.45767 4.49167 4.51968 4.55596 4.58765 4.61678 4.69384 4.72179 4.77222 4.83744 4.85398 4.88280 4.94668 5.07475 5.12543 5.14407 5.24827 5.28077 5.33096 5.39796 5.52300 5.54441 5.61482 5.67073 5.70723 5.87916 5.99134 6.23754 6.33986 6.40980 6.94794 7.49674 9.01131 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009929 B = 0.006355 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.479851 B = 4404.651752 C = 5652.002624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.080 4.080 4 H 0.103 0.897 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.144 4.144 8 C 0.128 3.872 9 H 0.098 0.902 10 N -1.103 6.103 11 S 2.792 3.208 12 O -1.010 7.010 13 O -1.017 7.017 14 N -0.988 5.988 15 C 0.266 3.734 16 C -0.536 4.536 17 H 0.091 0.909 18 C 0.014 3.986 19 N -0.929 5.929 20 Si 0.938 3.062 21 H -0.263 1.263 22 H -0.295 1.295 23 H -0.257 1.257 24 C 0.128 3.872 25 C 0.038 3.962 26 O -0.407 6.407 27 C 0.025 3.975 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.421 0.579 40 H 0.031 0.969 41 H 0.005 0.995 42 H 0.260 0.740 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.036 0.964 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.982 4.697 -9.738 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.100 4.100 4 H 0.121 0.879 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.184 4.184 8 C 0.021 3.979 9 H 0.115 0.885 10 N -0.864 5.864 11 S 2.801 3.199 12 O -0.994 6.994 13 O -1.001 7.001 14 N -0.828 5.828 15 C 0.142 3.858 16 C -0.575 4.575 17 H 0.109 0.891 18 C -0.185 4.185 19 N -0.569 5.569 20 Si 0.763 3.237 21 H -0.188 1.188 22 H -0.221 1.221 23 H -0.181 1.181 24 C 0.002 3.998 25 C -0.040 4.040 26 O -0.327 6.327 27 C -0.071 4.071 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.257 0.743 40 H 0.049 0.951 41 H 0.023 0.977 42 H 0.069 0.931 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.104 0.896 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.055 0.945 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.011 4.984 -9.576 14.723 hybrid contribution -0.125 -0.382 0.640 0.756 sum -10.136 4.602 -8.936 14.275 Atomic orbital electron populations 1.21732 0.94230 1.01724 1.02431 1.21584 0.96948 0.95773 1.01751 1.22343 0.91870 0.96502 0.99255 0.87912 1.22410 0.99715 0.96978 0.96533 1.22063 0.94574 0.99201 0.99589 1.22629 0.98660 0.97217 0.99866 1.22205 0.95956 0.98451 0.81325 0.88466 1.55616 1.39415 1.76841 1.14523 1.01340 0.73838 0.73115 0.71636 1.93518 1.85632 1.87636 1.32633 1.93536 1.64584 1.76964 1.64984 1.57464 1.77031 1.23835 1.24483 1.18715 0.94261 0.95406 0.77408 1.22041 0.96288 1.43962 0.95210 0.89132 1.25722 0.97700 0.95178 0.99942 1.70094 1.23505 1.45931 1.17396 0.85908 0.80245 0.79584 0.77953 1.18780 1.22147 1.18136 1.21366 0.94421 0.93253 0.90718 1.23230 0.92942 0.94930 0.92878 1.88039 1.36877 1.70259 1.37498 1.22869 0.87512 0.97832 0.98892 0.93030 0.92370 0.91319 0.91754 0.93868 0.93076 0.88843 0.89536 0.92281 0.90680 0.93949 0.74263 0.95093 0.97712 0.93068 0.89545 0.87283 0.89633 0.93895 0.91972 0.94508 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.76 71.98 0.70 -2.17 16 2 C -0.12 -3.20 4.75 30.60 0.15 -3.06 16 3 C -0.08 -1.96 2.55 -9.49 -0.02 -1.98 16 4 H 0.10 1.98 8.04 -2.39 -0.02 1.96 16 5 C -0.12 -2.79 5.47 31.67 0.17 -2.61 16 6 C -0.12 -2.83 6.80 31.32 0.21 -2.62 16 7 C -0.14 -4.48 6.54 31.32 0.20 -4.27 16 8 C 0.13 4.13 2.80 46.08 0.13 4.26 16 9 H 0.10 3.97 4.49 -2.38 -0.01 3.96 16 10 N -1.10 -33.67 5.60 -164.88 -0.92 -34.59 16 11 S 2.79 110.44 6.02 -56.49 -0.34 110.10 16 12 O -1.01 -39.68 17.08 -128.00 -2.19 -41.87 16 13 O -1.02 -49.72 16.30 -128.00 -2.09 -51.80 16 14 N -0.99 -40.53 2.80 -519.86 -1.46 -41.98 16 15 C 0.27 13.68 5.22 85.63 0.45 14.13 16 16 C -0.54 -27.46 7.53 25.60 0.19 -27.26 16 17 H 0.09 4.18 4.60 -2.91 -0.01 4.17 16 18 C 0.01 0.74 5.46 84.65 0.46 1.20 16 19 N -0.93 -55.07 13.29 21.45 0.28 -54.79 16 20 Si 0.94 41.76 29.54 68.60 2.03 43.79 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 24 C 0.13 4.24 5.78 86.38 0.50 4.74 16 25 C 0.04 1.21 6.29 71.98 0.45 1.67 16 26 O -0.41 -15.19 9.04 -148.98 -1.35 -16.54 16 27 C 0.03 0.71 11.01 113.37 1.25 1.96 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.09 7.41 -2.39 -0.02 1.08 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.39 6.87 -2.39 -0.02 1.37 16 33 H 0.05 1.41 8.01 -2.39 -0.02 1.39 16 34 H 0.09 1.66 8.02 -2.39 -0.02 1.64 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 2.10 8.04 -2.39 -0.02 2.08 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.42 9.70 8.74 -96.74 -0.85 8.85 16 40 H 0.03 1.74 6.66 -2.38 -0.02 1.72 16 41 H 0.00 0.29 6.87 -2.39 -0.02 0.27 16 42 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 43 H 0.09 2.92 8.10 -2.39 -0.02 2.90 16 44 H 0.11 2.80 7.85 -2.39 -0.02 2.78 16 45 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.04 1.42 7.79 -2.39 -0.02 1.40 16 47 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 48 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -71.14 392.16 -1.10 -72.23 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.09 Total: 31.48 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 4.85 Total: -16.02 kcal Atomic # 7 Polarization: -129.27 SS G_CDS: -2.10 Total: -131.36 kcal Atomic # 8 Polarization: -104.60 SS G_CDS: -5.62 Total: -110.22 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 110.44 SS G_CDS: -0.34 Total: 110.10 kcal Total: -71.14 -1.10 -72.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336940485.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.879 kcal (2) G-P(sol) polarization free energy of solvation -71.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds