Wall clock time and date at job start Tue Mar 31 2020 17:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47010 * 2 1 4 4 H 1.09003 * 109.47394 * 300.78298 * 3 2 1 5 5 N 1.46502 * 109.47372 * 60.78626 * 3 2 1 6 6 S 1.65600 * 119.99893 * 257.61996 * 5 3 2 7 7 O 1.42105 * 106.40102 * 46.47615 * 6 5 3 8 8 O 1.42099 * 106.40019 * 179.39304 * 6 5 3 9 9 N 1.65593 * 107.21825 * 292.93716 * 6 5 3 10 10 C 1.46504 * 120.00065 * 82.06752 * 9 6 5 11 11 C 1.53004 * 109.47220 * 94.99858 * 10 9 6 12 12 C 1.46505 * 120.00285 * 262.06390 * 9 6 5 13 13 C 1.50698 * 109.47007 * 99.91806 * 12 9 6 14 14 H 1.08003 * 119.99760 * 5.52235 * 13 12 9 15 15 C 1.37873 * 120.00105 * 185.51050 * 13 12 9 16 16 N 1.31518 * 119.99811 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47157 * 90.00248 * 17 15 13 19 19 H 1.48504 * 109.47006 * 210.00502 * 17 15 13 20 20 H 1.48499 * 109.47074 * 329.99874 * 17 15 13 21 21 C 1.53001 * 109.47112 * 180.78409 * 3 2 1 22 22 C 1.53172 * 109.54777 * 179.97438 * 21 3 2 23 23 C 1.53092 * 109.16677 * 183.15371 * 22 21 3 24 24 O 1.42898 * 109.41377 * 57.61284 * 23 22 21 25 25 C 1.42904 * 114.09726 * 298.83837 * 24 23 22 26 26 C 1.53100 * 109.41293 * 61.16163 * 25 24 23 27 27 H 1.08994 * 109.46727 * 61.19541 * 1 2 3 28 28 H 1.09000 * 109.47256 * 181.19669 * 1 2 3 29 29 H 1.09003 * 109.46563 * 301.19399 * 1 2 3 30 30 H 1.09000 * 109.46908 * 239.99961 * 2 1 3 31 31 H 1.08999 * 109.47283 * 120.00156 * 2 1 3 32 32 H 0.96996 * 119.99658 * 77.61572 * 5 3 2 33 33 H 1.09004 * 109.46965 * 214.99960 * 10 9 6 34 34 H 1.08994 * 109.46967 * 334.99587 * 10 9 6 35 35 H 1.09006 * 109.46725 * 299.99914 * 11 10 9 36 36 H 1.09003 * 109.47112 * 59.99816 * 11 10 9 37 37 H 1.08994 * 109.47200 * 180.02562 * 11 10 9 38 38 H 1.08991 * 109.47357 * 219.92346 * 12 9 6 39 39 H 1.08999 * 109.46437 * 339.92392 * 12 9 6 40 40 H 0.97000 * 120.00209 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.61637 * 300.22640 * 21 3 2 42 42 H 1.09006 * 109.51982 * 63.24961 * 22 21 3 43 43 H 1.09000 * 109.57686 * 303.09268 * 22 21 3 44 44 H 1.09003 * 109.47767 * 177.59790 * 23 22 21 45 45 H 1.08997 * 109.47737 * 297.62599 * 23 22 21 46 46 H 1.08998 * 109.48160 * 301.18225 * 25 24 23 47 47 H 1.08999 * 109.48051 * 181.14130 * 25 24 23 48 48 H 1.08996 * 109.52330 * 182.48816 * 26 25 24 49 49 H 1.08994 * 109.52310 * 62.29709 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6653 1.9604 -0.8829 5 7 1.5672 2.1276 1.2055 6 16 0.2911 3.1790 1.1137 7 8 -0.7118 2.5267 0.3469 8 8 0.0713 3.6594 2.4328 9 7 0.7912 4.4800 0.2195 10 6 0.7764 4.4122 -1.2439 11 6 -0.5278 5.0157 -1.7692 12 6 1.2484 5.6987 0.8917 13 6 2.7550 5.7247 0.9145 14 1 3.3162 4.9616 0.3957 15 6 3.4170 6.7229 1.5975 16 7 2.7336 7.6520 2.2295 17 14 5.2845 6.7555 1.6252 18 1 5.7827 7.5533 0.4761 19 1 5.7500 7.3709 2.8941 20 1 5.8053 5.3683 1.5277 21 6 3.5699 1.4425 -0.0197 22 6 4.0824 2.8860 -0.0204 23 6 5.6100 2.8769 -0.1197 24 8 6.0050 2.1781 -1.3019 25 6 5.5944 0.8097 -1.3354 26 6 4.0660 0.7357 -1.2850 27 1 -0.3632 0.4951 -0.9005 28 1 -0.3634 -1.0274 0.0215 29 1 -0.3632 0.5323 0.8791 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.0017 1.9654 2.0574 33 1 1.6223 4.9725 -1.6421 34 1 0.8486 3.3717 -1.5602 35 1 -1.3737 4.4553 -1.3709 36 1 -0.6000 6.0563 -1.4529 37 1 -0.5391 4.9649 -2.8579 38 1 0.8780 6.5712 0.3537 39 1 0.8693 5.7140 1.9135 40 1 3.1993 8.3540 2.7103 41 1 3.9472 0.9217 0.8602 42 1 3.7803 3.3802 0.9031 43 1 3.6651 3.4213 -0.8733 44 1 5.9775 3.9022 -0.1636 45 1 6.0281 2.3779 0.7545 46 1 6.0123 0.2836 -0.4771 47 1 5.9506 0.3457 -2.2552 48 1 3.7523 -0.3080 -1.2658 49 1 3.6484 1.2265 -2.1639 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337074812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:07 Heat of formation + Delta-G solvation = -140.026122 kcal Electronic energy + Delta-G solvation = -30658.507351 eV Core-core repulsion = 26746.851490 eV Total energy + Delta-G solvation = -3911.655860 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.59921 -37.22083 -36.41158 -36.03392 -35.19993 -32.76784 -32.67357 -31.70547 -30.67754 -29.91500 -26.86261 -26.51089 -23.69574 -23.29546 -22.93974 -21.70178 -20.90126 -20.17522 -18.81497 -17.05185 -16.78409 -16.58673 -16.28541 -15.83512 -15.65818 -15.22017 -14.78227 -14.41497 -14.40038 -13.99607 -13.78315 -13.53315 -13.30453 -13.23183 -12.90916 -12.47534 -12.28340 -12.05784 -12.01757 -11.77696 -11.62905 -11.53436 -11.40895 -11.31264 -11.20670 -11.08259 -10.99223 -10.92458 -10.71891 -10.68692 -10.50778 -10.38001 -10.29054 -10.05730 -10.01417 -9.63857 -9.32469 -9.01043 -8.48906 -8.02503 -6.09940 -4.15573 1.32149 3.22754 3.27955 3.31760 3.51379 4.01661 4.17959 4.35270 4.56729 4.76416 4.87492 4.99426 5.05245 5.10963 5.24357 5.27355 5.31493 5.36193 5.45165 5.51941 5.58418 5.68030 5.75649 5.78237 5.79982 5.80518 5.89036 5.98554 6.03724 6.07189 6.09833 6.13565 6.26956 6.31291 6.37220 6.55558 6.64290 6.67591 6.68601 6.71084 7.23301 7.33718 7.41966 7.49336 7.70303 7.88580 8.18897 8.90086 9.49935 10.98496 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008872 B = 0.007601 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.064931 B = 3682.735037 C = 5776.285400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.165 3.835 4 H 0.084 0.916 5 N -1.120 6.120 6 S 2.781 3.219 7 O -0.992 6.992 8 O -0.981 6.981 9 N -0.990 5.990 10 C 0.130 3.870 11 C -0.171 4.171 12 C 0.244 3.756 13 C -0.546 4.546 14 H 0.080 0.920 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.886 3.114 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.268 1.268 21 C -0.095 4.095 22 C -0.157 4.157 23 C 0.060 3.940 24 O -0.386 6.386 25 C 0.062 3.938 26 C -0.151 4.151 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.412 0.588 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.032 0.968 39 H 0.054 0.946 40 H 0.263 0.737 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.044 0.956 46 H 0.045 0.955 47 H 0.088 0.912 48 H 0.074 0.926 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 -14.196 -7.018 15.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.057 3.943 4 H 0.102 0.898 5 N -0.877 5.877 6 S 2.789 3.211 7 O -0.975 6.975 8 O -0.966 6.966 9 N -0.831 5.831 10 C 0.003 3.997 11 C -0.230 4.230 12 C 0.122 3.878 13 C -0.585 4.585 14 H 0.098 0.902 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.714 3.286 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.193 1.193 21 C -0.115 4.115 22 C -0.194 4.194 23 C -0.016 4.016 24 O -0.305 6.305 25 C -0.015 4.015 26 C -0.189 4.189 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.245 0.755 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.106 0.894 48 H 0.092 0.908 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.763 -14.005 -6.822 15.597 hybrid contribution 1.547 0.123 0.553 1.647 sum 2.310 -13.882 -6.270 15.406 Atomic orbital electron populations 1.21872 0.94500 1.00393 1.03861 1.22031 0.97227 0.96388 1.02007 1.20776 0.93434 0.92952 0.87109 0.89818 1.56103 1.54618 1.61098 1.15895 1.01873 0.73655 0.72391 0.73155 1.93581 1.56205 1.75021 1.72732 1.93595 1.84915 1.80125 1.37926 1.57718 1.81487 1.29969 1.13971 1.21040 0.98368 0.99696 0.80560 1.22211 0.98585 1.02058 1.00117 1.19194 0.94808 0.80397 0.93357 1.21904 0.91796 1.11980 1.32843 0.90226 1.24961 0.98176 0.95578 0.95180 1.69942 1.35521 1.14138 1.33192 0.86724 0.85929 0.78470 0.77517 1.20651 1.21351 1.19335 1.21533 0.94614 0.97256 0.98099 1.22530 0.95453 0.95706 1.05748 1.22682 0.94957 0.97217 0.86729 1.87925 1.77826 1.22982 1.41783 1.22506 0.93740 0.83755 1.01468 1.22292 0.96800 1.01123 0.98692 0.91773 0.93808 0.92084 0.91200 0.91873 0.75525 0.90189 0.92432 0.92329 0.92101 0.92552 0.95005 0.92758 0.92716 0.90816 0.87791 0.90384 0.88710 0.93739 0.93659 0.89364 0.90765 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.39 37.16 0.31 -1.61 16 2 C -0.14 -1.51 5.32 -26.73 -0.14 -1.65 16 3 C 0.17 2.08 1.92 -67.93 -0.13 1.95 16 4 H 0.08 1.09 5.48 -51.93 -0.28 0.81 16 5 N -1.12 -16.65 4.24 -4.89 -0.02 -16.67 16 6 S 2.78 51.98 5.73 -107.50 -0.62 51.36 16 7 O -0.99 -18.48 13.14 -57.17 -0.75 -19.24 16 8 O -0.98 -22.48 16.52 -57.17 -0.94 -23.42 16 9 N -0.99 -19.10 2.84 -115.66 -0.33 -19.43 16 10 C 0.13 2.12 5.92 -4.04 -0.02 2.09 16 11 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 12 C 0.24 5.82 5.45 -5.19 -0.03 5.79 16 13 C -0.55 -13.37 9.05 -34.44 -0.31 -13.68 16 14 H 0.08 1.77 3.94 -52.48 -0.21 1.56 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -25.06 13.29 55.43 0.74 -24.33 16 17 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -5.59 6.52 56.52 0.37 -5.22 16 21 C -0.09 -1.13 2.01 -90.44 -0.18 -1.31 16 22 C -0.16 -2.34 3.84 -26.59 -0.10 -2.44 16 23 C 0.06 0.90 6.84 37.21 0.25 1.15 16 24 O -0.39 -5.55 10.77 -35.23 -0.38 -5.93 16 25 C 0.06 0.67 6.84 37.21 0.25 0.93 16 26 C -0.15 -1.53 4.98 -26.58 -0.13 -1.66 16 27 H 0.06 0.88 7.63 -51.93 -0.40 0.48 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.90 5.76 -51.93 -0.30 0.61 16 30 H 0.07 0.65 6.48 -51.93 -0.34 0.31 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.41 5.66 8.91 -34.47 -0.31 5.36 16 33 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 34 H 0.06 0.82 5.52 -51.93 -0.29 0.53 16 35 H 0.06 0.93 7.92 -51.93 -0.41 0.52 16 36 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.05 1.47 6.77 -51.93 -0.35 1.12 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 1.79 6.01 -51.93 -0.31 1.48 16 43 H 0.08 1.24 7.68 -51.93 -0.40 0.84 16 44 H 0.09 1.54 7.56 -51.93 -0.39 1.14 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.61 6.61 -51.93 -0.34 0.27 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 377.07 15.07 5.68 5.68 Total: -1.00 -30.31 377.07 -9.73 -40.04 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -8.14 Total: 8.12 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 0.05 Total: -11.09 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.39 Total: -60.43 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -2.08 Total: -48.59 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 51.98 SS G_CDS: -0.62 Total: 51.36 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.31 -9.73 -40.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337074812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.983 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds