Wall clock time and date at job start Tue Mar 31 2020 17:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47010 * 2 1 4 4 H 1.09003 * 109.47394 * 300.78298 * 3 2 1 5 5 N 1.46502 * 109.47372 * 60.78626 * 3 2 1 6 6 S 1.65600 * 119.99893 * 257.61996 * 5 3 2 7 7 O 1.42105 * 106.40102 * 46.47615 * 6 5 3 8 8 O 1.42099 * 106.40019 * 179.39304 * 6 5 3 9 9 N 1.65593 * 107.21825 * 292.93716 * 6 5 3 10 10 C 1.46504 * 120.00065 * 82.06752 * 9 6 5 11 11 C 1.53004 * 109.47220 * 94.99858 * 10 9 6 12 12 C 1.46505 * 120.00285 * 262.06390 * 9 6 5 13 13 C 1.50698 * 109.47007 * 99.91806 * 12 9 6 14 14 H 1.08003 * 119.99760 * 5.52235 * 13 12 9 15 15 C 1.37873 * 120.00105 * 185.51050 * 13 12 9 16 16 N 1.31518 * 119.99811 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47157 * 90.00248 * 17 15 13 19 19 H 1.48504 * 109.47006 * 210.00502 * 17 15 13 20 20 H 1.48499 * 109.47074 * 329.99874 * 17 15 13 21 21 C 1.53001 * 109.47112 * 180.78409 * 3 2 1 22 22 C 1.53172 * 109.54777 * 179.97438 * 21 3 2 23 23 C 1.53092 * 109.16677 * 183.15371 * 22 21 3 24 24 O 1.42898 * 109.41377 * 57.61284 * 23 22 21 25 25 C 1.42904 * 114.09726 * 298.83837 * 24 23 22 26 26 C 1.53100 * 109.41293 * 61.16163 * 25 24 23 27 27 H 1.08994 * 109.46727 * 61.19541 * 1 2 3 28 28 H 1.09000 * 109.47256 * 181.19669 * 1 2 3 29 29 H 1.09003 * 109.46563 * 301.19399 * 1 2 3 30 30 H 1.09000 * 109.46908 * 239.99961 * 2 1 3 31 31 H 1.08999 * 109.47283 * 120.00156 * 2 1 3 32 32 H 0.96996 * 119.99658 * 77.61572 * 5 3 2 33 33 H 1.09004 * 109.46965 * 214.99960 * 10 9 6 34 34 H 1.08994 * 109.46967 * 334.99587 * 10 9 6 35 35 H 1.09006 * 109.46725 * 299.99914 * 11 10 9 36 36 H 1.09003 * 109.47112 * 59.99816 * 11 10 9 37 37 H 1.08994 * 109.47200 * 180.02562 * 11 10 9 38 38 H 1.08991 * 109.47357 * 219.92346 * 12 9 6 39 39 H 1.08999 * 109.46437 * 339.92392 * 12 9 6 40 40 H 0.97000 * 120.00209 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.61637 * 300.22640 * 21 3 2 42 42 H 1.09006 * 109.51982 * 63.24961 * 22 21 3 43 43 H 1.09000 * 109.57686 * 303.09268 * 22 21 3 44 44 H 1.09003 * 109.47767 * 177.59790 * 23 22 21 45 45 H 1.08997 * 109.47737 * 297.62599 * 23 22 21 46 46 H 1.08998 * 109.48160 * 301.18225 * 25 24 23 47 47 H 1.08999 * 109.48051 * 181.14130 * 25 24 23 48 48 H 1.08996 * 109.52330 * 182.48816 * 26 25 24 49 49 H 1.08994 * 109.52310 * 62.29709 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6653 1.9604 -0.8829 5 7 1.5672 2.1276 1.2055 6 16 0.2911 3.1790 1.1137 7 8 -0.7118 2.5267 0.3469 8 8 0.0713 3.6594 2.4328 9 7 0.7912 4.4800 0.2195 10 6 0.7764 4.4122 -1.2439 11 6 -0.5278 5.0157 -1.7692 12 6 1.2484 5.6987 0.8917 13 6 2.7550 5.7247 0.9145 14 1 3.3162 4.9616 0.3957 15 6 3.4170 6.7229 1.5975 16 7 2.7336 7.6520 2.2295 17 14 5.2845 6.7555 1.6252 18 1 5.7827 7.5533 0.4761 19 1 5.7500 7.3709 2.8941 20 1 5.8053 5.3683 1.5277 21 6 3.5699 1.4425 -0.0197 22 6 4.0824 2.8860 -0.0204 23 6 5.6100 2.8769 -0.1197 24 8 6.0050 2.1781 -1.3019 25 6 5.5944 0.8097 -1.3354 26 6 4.0660 0.7357 -1.2850 27 1 -0.3632 0.4951 -0.9005 28 1 -0.3634 -1.0274 0.0215 29 1 -0.3632 0.5323 0.8791 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.0017 1.9654 2.0574 33 1 1.6223 4.9725 -1.6421 34 1 0.8486 3.3717 -1.5602 35 1 -1.3737 4.4553 -1.3709 36 1 -0.6000 6.0563 -1.4529 37 1 -0.5391 4.9649 -2.8579 38 1 0.8780 6.5712 0.3537 39 1 0.8693 5.7140 1.9135 40 1 3.1993 8.3540 2.7103 41 1 3.9472 0.9217 0.8602 42 1 3.7803 3.3802 0.9031 43 1 3.6651 3.4213 -0.8733 44 1 5.9775 3.9022 -0.1636 45 1 6.0281 2.3779 0.7545 46 1 6.0123 0.2836 -0.4771 47 1 5.9506 0.3457 -2.2552 48 1 3.7523 -0.3080 -1.2658 49 1 3.6484 1.2265 -2.1639 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337074812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:06 Heat of formation + Delta-G solvation = -161.381602 kcal Electronic energy + Delta-G solvation = -30659.433394 eV Core-core repulsion = 26746.851490 eV Total energy + Delta-G solvation = -3912.581903 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.59727 -38.49229 -37.82204 -37.60086 -36.80583 -34.63505 -33.75851 -32.76135 -31.69632 -31.46224 -28.47510 -27.74634 -25.02714 -24.64068 -23.92130 -23.24300 -21.92358 -21.23802 -20.20519 -18.52273 -18.48778 -18.18512 -17.63843 -16.86850 -16.83824 -16.65225 -16.16355 -15.75709 -15.39556 -15.31097 -15.02802 -14.75406 -14.62570 -14.43524 -14.30889 -13.74712 -13.61204 -13.49791 -13.34997 -13.30269 -13.24788 -12.96713 -12.76060 -12.70863 -12.63465 -12.44173 -12.27949 -12.15294 -12.10621 -11.93510 -11.73906 -11.73626 -11.61098 -11.39812 -11.10119 -11.05423 -10.56986 -10.50801 -10.10233 -9.69091 -8.10934 -6.22207 -0.18762 1.43196 1.44445 1.52755 2.07656 2.45557 2.70591 3.05856 3.22211 3.50923 3.56983 3.85397 3.88634 3.98048 4.18057 4.24683 4.28949 4.37009 4.44813 4.47246 4.51513 4.52176 4.64562 4.71978 4.77663 4.85620 4.88936 4.93608 4.97930 5.00533 5.07190 5.14133 5.18053 5.20123 5.31498 5.33576 5.37117 5.44168 5.47143 5.57652 5.62087 5.65437 5.85295 5.95788 6.20726 6.26418 6.36692 6.93330 7.47612 8.97968 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008872 B = 0.007601 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.064931 B = 3682.735037 C = 5776.285400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.159 3.841 4 H 0.080 0.920 5 N -1.110 6.110 6 S 2.794 3.206 7 O -0.991 6.991 8 O -1.028 7.028 9 N -0.993 5.993 10 C 0.123 3.877 11 C -0.168 4.168 12 C 0.259 3.741 13 C -0.540 4.540 14 H 0.103 0.897 15 C 0.008 3.992 16 N -0.935 5.935 17 Si 0.943 3.057 18 H -0.279 1.279 19 H -0.296 1.296 20 H -0.241 1.241 21 C -0.087 4.087 22 C -0.156 4.156 23 C 0.062 3.938 24 O -0.404 6.404 25 C 0.054 3.946 26 C -0.145 4.145 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.418 0.582 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.012 0.988 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.109 0.891 48 H 0.104 0.896 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 -17.504 -8.846 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.169 4.169 3 C 0.052 3.948 4 H 0.098 0.902 5 N -0.871 5.871 6 S 2.802 3.198 7 O -0.974 6.974 8 O -1.013 7.013 9 N -0.834 5.834 10 C -0.002 4.002 11 C -0.227 4.227 12 C 0.136 3.864 13 C -0.579 4.579 14 H 0.121 0.879 15 C -0.191 4.191 16 N -0.576 5.576 17 Si 0.768 3.232 18 H -0.205 1.205 19 H -0.223 1.223 20 H -0.164 1.164 21 C -0.107 4.107 22 C -0.194 4.194 23 C -0.014 4.014 24 O -0.324 6.324 25 C -0.022 4.022 26 C -0.183 4.183 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.253 0.747 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.030 0.970 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.127 0.873 48 H 0.122 0.878 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.364 -17.348 -8.683 19.544 hybrid contribution 0.990 1.057 1.048 1.788 sum 3.354 -16.291 -7.635 18.302 Atomic orbital electron populations 1.21882 0.96063 1.01037 1.02060 1.22015 0.95689 0.95099 1.04101 1.21050 0.94121 0.93929 0.85674 0.90165 1.55788 1.53892 1.60123 1.17281 1.01306 0.74182 0.72333 0.71945 1.93584 1.56707 1.74688 1.72406 1.93530 1.85987 1.81201 1.40558 1.57598 1.81528 1.28883 1.15383 1.21289 0.98871 1.01464 0.78625 1.22195 0.97636 1.00740 1.02168 1.18699 0.94670 0.81610 0.91454 1.22356 0.92213 1.11719 1.31583 0.87926 1.25802 1.02623 0.95461 0.95186 1.70100 1.37337 1.15255 1.34895 0.85802 0.80769 0.79776 0.76848 1.20528 1.22271 1.16446 1.21485 0.93667 0.95570 1.00001 1.22416 0.95834 0.97552 1.03605 1.22557 0.94603 0.96697 0.87572 1.87901 1.78159 1.24935 1.41387 1.22791 0.94206 0.82041 1.03151 1.22289 0.96308 1.02511 0.97194 0.92859 0.91997 0.94606 0.88279 0.90491 0.74705 0.90373 0.89753 0.93091 0.93722 0.89318 0.97036 0.96579 0.93081 0.89461 0.90493 0.91752 0.90676 0.92640 0.92436 0.87314 0.87763 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.39 71.98 0.60 -2.92 16 2 C -0.13 -2.32 5.32 30.59 0.16 -2.16 16 3 C 0.16 3.55 1.92 44.99 0.09 3.64 16 4 H 0.08 1.86 5.48 -2.39 -0.01 1.85 16 5 N -1.11 -31.72 4.24 -169.39 -0.72 -32.44 16 6 S 2.79 105.42 5.73 -56.49 -0.32 105.10 16 7 O -0.99 -36.51 13.14 -128.00 -1.68 -38.19 16 8 O -1.03 -48.96 16.52 -128.00 -2.12 -51.08 16 9 N -0.99 -39.03 2.84 -519.84 -1.48 -40.50 16 10 C 0.12 3.92 5.92 86.38 0.51 4.43 16 11 C -0.17 -5.04 10.24 71.98 0.74 -4.30 16 12 C 0.26 12.92 5.45 85.63 0.47 13.39 16 13 C -0.54 -26.97 9.05 25.60 0.23 -26.74 16 14 H 0.10 4.55 3.94 -2.91 -0.01 4.54 16 15 C 0.01 0.41 5.46 84.65 0.46 0.88 16 16 N -0.94 -54.85 13.29 21.45 0.28 -54.56 16 17 Si 0.94 41.23 29.54 68.60 2.03 43.26 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.24 -9.37 6.52 99.48 0.65 -8.72 16 21 C -0.09 -1.78 2.01 -10.67 -0.02 -1.80 16 22 C -0.16 -4.36 3.84 30.68 0.12 -4.24 16 23 C 0.06 1.71 6.84 72.01 0.49 2.21 16 24 O -0.40 -10.47 10.77 -148.98 -1.60 -12.07 16 25 C 0.05 0.94 6.84 72.02 0.49 1.43 16 26 C -0.14 -2.27 4.98 30.69 0.15 -2.12 16 27 H 0.05 1.33 7.63 -2.39 -0.02 1.31 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.03 1.00 5.76 -2.39 -0.01 0.98 16 30 H 0.10 1.26 6.48 -2.39 -0.02 1.24 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.42 11.07 8.91 -96.75 -0.86 10.21 16 33 H 0.08 2.53 8.10 -2.39 -0.02 2.51 16 34 H 0.08 2.24 5.52 -2.39 -0.01 2.22 16 35 H 0.05 1.59 7.92 -2.38 -0.02 1.57 16 36 H 0.04 1.46 8.11 -2.39 -0.02 1.44 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.01 0.62 8.10 -2.39 -0.02 0.60 16 39 H 0.02 0.93 6.77 -2.39 -0.02 0.91 16 40 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 42 H 0.08 2.56 6.01 -2.38 -0.01 2.55 16 43 H 0.06 1.94 7.68 -2.39 -0.02 1.92 16 44 H 0.07 2.32 7.56 -2.39 -0.02 2.30 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.10 1.06 6.61 -2.39 -0.02 1.05 16 49 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -68.63 377.07 -1.08 -69.71 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.03 Total: 29.10 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 4.50 Total: -18.31 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -1.91 Total: -127.50 kcal Atomic # 8 Polarization: -95.94 SS G_CDS: -5.40 Total: -101.34 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: 105.42 SS G_CDS: -0.32 Total: 105.10 kcal Total: -68.63 -1.08 -69.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337074812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.676 kcal (2) G-P(sol) polarization free energy of solvation -68.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds