Wall clock time and date at job start Tue Mar 31 2020 18:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99600 * 2 1 4 4 C 1.53001 * 109.46918 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47393 * 64.99865 * 4 3 2 6 6 C 1.46503 * 120.00101 * 275.00089 * 5 4 3 7 7 C 1.50698 * 109.47325 * 274.99753 * 6 5 4 8 8 H 1.07996 * 119.99916 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00039 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99928 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00280 * 0.02562 * 9 7 6 12 12 H 1.48511 * 109.47088 * 89.99482 * 11 9 7 13 13 H 1.48493 * 109.47593 * 209.99344 * 11 9 7 14 14 H 1.48496 * 109.47041 * 329.99916 * 11 9 7 15 15 S 1.65598 * 120.00228 * 94.99881 * 5 4 3 16 16 O 1.42103 * 106.40120 * 336.46626 * 15 5 4 17 17 O 1.42100 * 106.40649 * 203.54435 * 15 5 4 18 18 N 1.65602 * 107.21775 * 89.99901 * 15 5 4 19 19 C 1.46495 * 120.00431 * 258.60929 * 18 15 5 20 20 C 1.52992 * 109.47525 * 125.30929 * 19 18 15 21 21 C 1.53003 * 109.46983 * 245.31050 * 19 18 15 22 22 C 1.46500 * 119.99637 * 78.60630 * 18 15 5 23 23 C 1.53782 * 113.69309 * 6.32750 * 22 18 15 24 24 C 1.53780 * 87.07901 * 89.12659 * 23 22 18 25 25 C 1.53774 * 87.08607 * 25.43340 * 24 23 22 26 26 H 1.08996 * 109.47264 * 60.00427 * 1 2 3 27 27 H 1.09001 * 109.47059 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47110 * 299.99982 * 1 2 3 29 29 H 1.08999 * 109.47105 * 60.00390 * 3 2 1 30 30 H 1.09002 * 109.47105 * 299.99800 * 3 2 1 31 31 H 1.09006 * 109.47265 * 304.99982 * 4 3 2 32 32 H 1.09003 * 109.47118 * 185.00024 * 4 3 2 33 33 H 1.09000 * 109.47224 * 35.00328 * 6 5 4 34 34 H 1.09005 * 109.47206 * 154.99874 * 6 5 4 35 35 H 0.96998 * 119.99901 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47037 * 5.30617 * 19 18 15 37 37 H 1.09007 * 109.47216 * 58.45274 * 20 19 18 38 38 H 1.08996 * 109.47664 * 178.45565 * 20 19 18 39 39 H 1.09005 * 109.47374 * 298.45627 * 20 19 18 40 40 H 1.08994 * 109.47082 * 51.98391 * 21 19 18 41 41 H 1.09001 * 109.47198 * 171.98059 * 21 19 18 42 42 H 1.09000 * 109.47152 * 291.97855 * 21 19 18 43 43 H 1.08996 * 112.84945 * 235.05870 * 22 18 15 44 44 H 1.08992 * 113.61578 * 203.67428 * 23 22 18 45 45 H 1.09004 * 113.61464 * 334.58000 * 23 22 18 46 46 H 1.09008 * 113.61481 * 270.87969 * 24 23 22 47 47 H 1.09004 * 113.61636 * 139.98154 * 24 23 22 48 48 H 1.08994 * 113.62200 * 220.02259 * 25 24 23 49 49 H 1.09003 * 113.69322 * 89.11889 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0005 -0.8949 -1.3781 7 6 5.2995 -1.4245 -0.8275 8 1 6.0330 -0.7422 -0.4240 9 6 5.5510 -2.7800 -0.8378 10 7 6.6844 -3.2422 -0.3568 11 14 4.2819 -3.9602 -1.5350 12 1 4.5311 -4.1546 -2.9861 13 1 4.3838 -5.2664 -0.8360 14 1 2.9218 -3.3978 -1.3374 15 16 4.4454 1.5130 -2.5263 16 8 3.8177 2.7743 -2.3401 17 8 4.2757 0.7258 -3.6970 18 7 6.0733 1.7733 -2.3695 19 6 6.5635 3.0458 -1.8342 20 6 7.4858 2.7767 -0.6435 21 6 7.3393 3.7916 -2.9218 22 6 7.0232 0.7309 -2.7661 23 6 6.3635 -0.4790 -3.4488 24 6 6.5486 0.2702 -4.7789 25 6 7.7186 1.0099 -4.1091 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8515 0.5683 0.8410 32 1 3.9785 2.1767 0.0889 33 1 3.1679 -1.3218 -0.8190 34 1 3.9119 -1.1709 -2.4289 35 1 6.8615 -4.1959 -0.3644 36 1 5.7186 3.6529 -1.5094 37 1 8.3162 2.1467 -0.9622 38 1 7.8722 3.7219 -0.2623 39 1 6.9259 2.2697 0.1425 40 1 6.7291 3.8580 -3.8225 41 1 7.5813 4.7952 -2.5721 42 1 8.2601 3.2529 -3.1456 43 1 7.7117 0.4590 -1.9661 44 1 6.9510 -1.3943 -3.3778 45 1 5.3195 -0.6221 -3.1699 46 1 5.7109 0.9191 -5.0349 47 1 6.8540 -0.3735 -5.6038 48 1 7.7687 2.0687 -4.3631 49 1 8.6773 0.5027 -4.2179 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337093243.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:09 Heat of formation + Delta-G solvation = -68.086948 kcal Electronic energy + Delta-G solvation = -31051.868900 eV Core-core repulsion = 27143.332557 eV Total energy + Delta-G solvation = -3908.536343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.13305 -37.83879 -37.06746 -35.53086 -35.29987 -34.87254 -32.47925 -30.24322 -29.80840 -27.20296 -27.13857 -25.79432 -24.87056 -24.42952 -22.61140 -21.62753 -20.87752 -19.52343 -17.69091 -17.37191 -17.01181 -16.66632 -16.07024 -15.78863 -15.62093 -15.04722 -14.71357 -14.34619 -14.28727 -14.04610 -13.80121 -13.58826 -13.26745 -12.56515 -12.46381 -12.42947 -12.24177 -12.05802 -12.05439 -11.94515 -11.84342 -11.68598 -11.39648 -11.23269 -11.20978 -10.98264 -10.91139 -10.86175 -10.66355 -10.38436 -10.36860 -10.15743 -9.82985 -9.76225 -9.50001 -9.38769 -9.03434 -8.55693 -8.45312 -8.02948 -6.07257 -4.04468 1.21113 3.32006 3.37677 3.42558 3.46245 4.00911 4.07778 4.44127 4.83732 4.90979 5.19471 5.21933 5.25177 5.32434 5.35318 5.37677 5.43275 5.47819 5.56874 5.58897 5.62175 5.69289 5.72351 5.76236 5.83067 5.85463 5.95479 5.98920 6.16478 6.22057 6.23953 6.41603 6.44526 6.50143 6.53584 6.58866 6.63426 6.90676 6.96590 6.98369 7.25576 7.32092 7.38481 7.47933 7.53382 7.66953 8.50118 8.97296 9.54944 11.04959 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010125 B = 0.007448 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.869304 B = 3758.708125 C = 5264.988869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.043 3.957 4 C 0.136 3.864 5 N -0.980 5.980 6 C 0.210 3.790 7 C -0.527 4.527 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.895 5.895 11 Si 0.858 3.142 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.260 1.260 15 S 2.779 3.221 16 O -1.003 7.003 17 O -0.970 6.970 18 N -0.980 5.980 19 C 0.143 3.857 20 C -0.159 4.159 21 C -0.161 4.161 22 C 0.144 3.856 23 C -0.151 4.151 24 C -0.144 4.144 25 C -0.166 4.166 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.262 0.738 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.115 0.885 46 H 0.092 0.908 47 H 0.052 0.948 48 H 0.070 0.930 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 11.515 -1.240 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.036 4.036 4 C 0.009 3.991 5 N -0.819 5.819 6 C 0.087 3.913 7 C -0.566 4.566 8 H 0.099 0.901 9 C -0.123 4.123 10 N -0.533 5.533 11 Si 0.684 3.316 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.185 1.185 15 S 2.791 3.209 16 O -0.987 6.987 17 O -0.954 6.954 18 N -0.818 5.818 19 C 0.036 3.964 20 C -0.217 4.217 21 C -0.220 4.220 22 C 0.037 3.963 23 C -0.188 4.188 24 C -0.182 4.182 25 C -0.205 4.205 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.133 0.867 46 H 0.111 0.889 47 H 0.071 0.929 48 H 0.088 0.912 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.872 11.496 -1.891 12.000 hybrid contribution -0.402 -0.759 0.063 0.861 sum -3.274 10.738 -1.828 11.374 Atomic orbital electron populations 1.22713 0.82275 1.02402 0.99334 1.88060 1.18547 1.27372 1.95210 1.23130 0.95413 0.84994 1.00025 1.21077 0.91119 0.97936 0.88936 1.57459 1.78792 1.18276 1.27406 1.19777 0.99113 0.74516 0.97859 1.21395 1.01502 0.92946 1.40803 0.90061 1.24738 0.94873 0.97908 0.94750 1.69885 1.23472 1.13880 1.46112 0.87116 0.83485 0.81112 0.79838 1.19886 1.21337 1.18484 1.01986 0.72613 0.72192 0.74126 1.93494 1.74701 1.43252 1.87264 1.93570 1.85631 1.69798 1.46379 1.57692 1.24327 1.21678 1.78068 1.20775 0.97954 0.83917 0.93723 1.22104 1.00315 1.01548 0.97778 1.22304 1.01031 0.99713 0.98929 1.21524 0.92219 0.87487 0.95027 1.23781 1.05369 0.95956 0.93729 1.23126 0.97849 0.99706 0.97499 1.23592 0.98244 1.00808 0.97887 0.94534 0.89942 0.94559 0.92917 0.93257 0.88850 0.90165 0.92898 0.94284 0.92761 0.88809 0.91771 0.92267 0.91899 0.92580 0.92192 0.91474 0.89675 0.89284 0.86689 0.88930 0.92881 0.91169 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.50 9.02 -35.23 -0.32 -6.82 16 3 C 0.04 0.67 6.28 37.16 0.23 0.91 16 4 C 0.14 2.30 5.79 -4.04 -0.02 2.28 16 5 N -0.98 -19.42 2.81 -115.66 -0.33 -19.75 16 6 C 0.21 4.83 3.64 -5.19 -0.02 4.81 16 7 C -0.53 -13.29 7.81 -34.44 -0.27 -13.56 16 8 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 9 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -25.38 13.96 55.43 0.77 -24.60 16 11 Si 0.86 20.73 27.47 -169.99 -4.67 16.06 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 15 S 2.78 53.71 5.69 -107.50 -0.61 53.10 16 16 O -1.00 -19.59 15.45 -57.17 -0.88 -20.47 16 17 O -0.97 -20.80 10.70 -57.17 -0.61 -21.41 16 18 N -0.98 -16.64 2.90 -99.44 -0.29 -16.93 16 19 C 0.14 2.01 3.26 -67.94 -0.22 1.79 16 20 C -0.16 -2.04 9.05 37.15 0.34 -1.70 16 21 C -0.16 -1.94 7.88 37.16 0.29 -1.65 16 22 C 0.14 2.56 3.88 -67.11 -0.26 2.30 16 23 C -0.15 -3.07 5.49 -25.92 -0.14 -3.21 16 24 C -0.14 -2.58 7.38 -25.92 -0.19 -2.77 16 25 C -0.17 -2.58 7.18 -25.92 -0.19 -2.77 16 26 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.62 8.11 -51.93 -0.42 1.20 16 32 H 0.08 1.17 7.61 -51.93 -0.40 0.77 16 33 H 0.05 1.26 5.66 -51.93 -0.29 0.97 16 34 H 0.04 0.94 5.14 -51.93 -0.27 0.68 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.09 1.32 6.73 -51.93 -0.35 0.97 16 37 H 0.06 0.86 6.92 -51.93 -0.36 0.50 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.78 6.33 -51.93 -0.33 0.46 16 43 H 0.09 1.58 7.06 -51.93 -0.37 1.21 16 44 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 45 H 0.12 2.59 1.75 -52.02 -0.09 2.50 16 46 H 0.09 1.75 5.98 -51.92 -0.31 1.44 16 47 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.07 0.98 5.08 -51.93 -0.26 0.72 16 49 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -30.01 373.10 -8.84 -38.85 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -8.10 Total: 6.40 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 0.57 Total: -10.04 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.16 Total: -61.29 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -1.81 Total: -48.70 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Atomic # 16 Polarization: 53.71 SS G_CDS: -0.61 Total: 53.10 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.01 -8.84 -38.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337093243.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.237 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds