Wall clock time and date at job start Tue Mar 31 2020 18:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99600 * 2 1 4 4 C 1.53001 * 109.46918 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47393 * 64.99865 * 4 3 2 6 6 C 1.46503 * 120.00101 * 275.00089 * 5 4 3 7 7 C 1.50698 * 109.47325 * 274.99753 * 6 5 4 8 8 H 1.07996 * 119.99916 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00039 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99928 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00280 * 0.02562 * 9 7 6 12 12 H 1.48511 * 109.47088 * 89.99482 * 11 9 7 13 13 H 1.48493 * 109.47593 * 209.99344 * 11 9 7 14 14 H 1.48496 * 109.47041 * 329.99916 * 11 9 7 15 15 S 1.65598 * 120.00228 * 94.99881 * 5 4 3 16 16 O 1.42103 * 106.40120 * 336.46626 * 15 5 4 17 17 O 1.42100 * 106.40649 * 203.54435 * 15 5 4 18 18 N 1.65602 * 107.21775 * 89.99901 * 15 5 4 19 19 C 1.46495 * 120.00431 * 258.60929 * 18 15 5 20 20 C 1.52992 * 109.47525 * 125.30929 * 19 18 15 21 21 C 1.53003 * 109.46983 * 245.31050 * 19 18 15 22 22 C 1.46500 * 119.99637 * 78.60630 * 18 15 5 23 23 C 1.53782 * 113.69309 * 6.32750 * 22 18 15 24 24 C 1.53780 * 87.07901 * 89.12659 * 23 22 18 25 25 C 1.53774 * 87.08607 * 25.43340 * 24 23 22 26 26 H 1.08996 * 109.47264 * 60.00427 * 1 2 3 27 27 H 1.09001 * 109.47059 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47110 * 299.99982 * 1 2 3 29 29 H 1.08999 * 109.47105 * 60.00390 * 3 2 1 30 30 H 1.09002 * 109.47105 * 299.99800 * 3 2 1 31 31 H 1.09006 * 109.47265 * 304.99982 * 4 3 2 32 32 H 1.09003 * 109.47118 * 185.00024 * 4 3 2 33 33 H 1.09000 * 109.47224 * 35.00328 * 6 5 4 34 34 H 1.09005 * 109.47206 * 154.99874 * 6 5 4 35 35 H 0.96998 * 119.99901 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47037 * 5.30617 * 19 18 15 37 37 H 1.09007 * 109.47216 * 58.45274 * 20 19 18 38 38 H 1.08996 * 109.47664 * 178.45565 * 20 19 18 39 39 H 1.09005 * 109.47374 * 298.45627 * 20 19 18 40 40 H 1.08994 * 109.47082 * 51.98391 * 21 19 18 41 41 H 1.09001 * 109.47198 * 171.98059 * 21 19 18 42 42 H 1.09000 * 109.47152 * 291.97855 * 21 19 18 43 43 H 1.08996 * 112.84945 * 235.05870 * 22 18 15 44 44 H 1.08992 * 113.61578 * 203.67428 * 23 22 18 45 45 H 1.09004 * 113.61464 * 334.58000 * 23 22 18 46 46 H 1.09008 * 113.61481 * 270.87969 * 24 23 22 47 47 H 1.09004 * 113.61636 * 139.98154 * 24 23 22 48 48 H 1.08994 * 113.62200 * 220.02259 * 25 24 23 49 49 H 1.09003 * 113.69322 * 89.11889 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0005 -0.8949 -1.3781 7 6 5.2995 -1.4245 -0.8275 8 1 6.0330 -0.7422 -0.4240 9 6 5.5510 -2.7800 -0.8378 10 7 6.6844 -3.2422 -0.3568 11 14 4.2819 -3.9602 -1.5350 12 1 4.5311 -4.1546 -2.9861 13 1 4.3838 -5.2664 -0.8360 14 1 2.9218 -3.3978 -1.3374 15 16 4.4454 1.5130 -2.5263 16 8 3.8177 2.7743 -2.3401 17 8 4.2757 0.7258 -3.6970 18 7 6.0733 1.7733 -2.3695 19 6 6.5635 3.0458 -1.8342 20 6 7.4858 2.7767 -0.6435 21 6 7.3393 3.7916 -2.9218 22 6 7.0232 0.7309 -2.7661 23 6 6.3635 -0.4790 -3.4488 24 6 6.5486 0.2702 -4.7789 25 6 7.7186 1.0099 -4.1091 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8515 0.5683 0.8410 32 1 3.9785 2.1767 0.0889 33 1 3.1679 -1.3218 -0.8190 34 1 3.9119 -1.1709 -2.4289 35 1 6.8615 -4.1959 -0.3644 36 1 5.7186 3.6529 -1.5094 37 1 8.3162 2.1467 -0.9622 38 1 7.8722 3.7219 -0.2623 39 1 6.9259 2.2697 0.1425 40 1 6.7291 3.8580 -3.8225 41 1 7.5813 4.7952 -2.5721 42 1 8.2601 3.2529 -3.1456 43 1 7.7117 0.4590 -1.9661 44 1 6.9510 -1.3943 -3.3778 45 1 5.3195 -0.6221 -3.1699 46 1 5.7109 0.9191 -5.0349 47 1 6.8540 -0.3735 -5.6038 48 1 7.7687 2.0687 -4.3631 49 1 8.6773 0.5027 -4.2179 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337093243.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:08 Heat of formation + Delta-G solvation = -87.912377 kcal Electronic energy + Delta-G solvation = -31052.728595 eV Core-core repulsion = 27143.332557 eV Total energy + Delta-G solvation = -3909.396039 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.54875 -39.11470 -38.54673 -37.06453 -36.86528 -36.19832 -34.46254 -31.53177 -31.32901 -28.81591 -28.15043 -27.00872 -26.29916 -25.83805 -24.22792 -23.22387 -22.07931 -20.98274 -19.21456 -18.92240 -18.83840 -18.14992 -17.48739 -17.12730 -16.96686 -16.46561 -16.21328 -15.84758 -15.69069 -15.50692 -15.12775 -14.96092 -14.46338 -14.40153 -13.91990 -13.89135 -13.65130 -13.51768 -13.46766 -13.27746 -13.12450 -13.02503 -12.80644 -12.73048 -12.50050 -12.41065 -12.33614 -12.21515 -12.11233 -12.02312 -11.91671 -11.66995 -11.53161 -11.24486 -11.12758 -10.66009 -10.60708 -10.51860 -9.85176 -9.64471 -8.17358 -6.15129 -0.30018 1.37027 1.41483 1.49718 1.92857 2.41517 2.51688 2.93672 3.19005 3.36333 3.56742 3.89578 3.92983 3.99828 4.15877 4.21378 4.24108 4.30001 4.36560 4.38422 4.45603 4.53611 4.57538 4.65971 4.73896 4.79491 4.84556 4.86587 4.90576 4.97042 5.01744 5.05502 5.08521 5.15937 5.19135 5.27973 5.43532 5.44876 5.46363 5.51427 5.57227 5.63228 5.69677 5.78204 6.06753 6.34300 6.43645 6.86892 7.46054 8.97309 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010125 B = 0.007448 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.869304 B = 3758.708125 C = 5264.988869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.409 6.409 3 C 0.043 3.957 4 C 0.127 3.873 5 N -0.986 5.986 6 C 0.225 3.775 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.036 3.964 10 N -0.933 5.933 11 Si 0.900 3.100 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.252 1.252 15 S 2.784 3.216 16 O -1.004 7.004 17 O -0.993 6.993 18 N -0.976 5.976 19 C 0.133 3.867 20 C -0.154 4.154 21 C -0.159 4.159 22 C 0.148 3.852 23 C -0.170 4.170 24 C -0.142 4.142 25 C -0.145 4.145 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.028 0.972 35 H 0.262 0.738 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.092 0.908 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 13.541 -1.351 13.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.328 6.328 3 C -0.035 4.035 4 C 0.001 3.999 5 N -0.825 5.825 6 C 0.101 3.899 7 C -0.543 4.543 8 H 0.078 0.922 9 C -0.163 4.163 10 N -0.574 5.574 11 Si 0.726 3.274 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.176 1.176 15 S 2.796 3.204 16 O -0.988 6.988 17 O -0.977 6.977 18 N -0.816 5.816 19 C 0.028 3.972 20 C -0.213 4.213 21 C -0.218 4.218 22 C 0.042 3.958 23 C -0.207 4.207 24 C -0.180 4.180 25 C -0.184 4.184 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.110 0.890 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.044 13.552 -1.992 14.032 hybrid contribution -0.370 -1.307 0.140 1.366 sum -3.414 12.245 -1.852 12.846 Atomic orbital electron populations 1.22913 0.80282 1.03328 1.00795 1.87997 1.20897 1.28446 1.95499 1.23156 0.94191 0.84782 1.01354 1.21343 0.92619 0.98632 0.87303 1.57438 1.79467 1.16873 1.28720 1.19395 0.97309 0.76546 0.96684 1.21444 1.01672 0.92309 1.38923 0.92212 1.25288 0.96141 0.99433 0.95469 1.69984 1.25114 1.14050 1.48203 0.86415 0.82169 0.79647 0.79141 1.19943 1.21138 1.17616 1.01724 0.73161 0.71842 0.73656 1.93485 1.75159 1.42938 1.87238 1.93545 1.86228 1.70383 1.47573 1.57571 1.23220 1.22573 1.78216 1.21109 0.98580 0.82607 0.94942 1.22074 0.99551 1.02827 0.96819 1.22295 1.00638 1.00969 0.97876 1.21410 0.91831 0.86846 0.95753 1.23772 1.03910 0.96519 0.96547 1.23062 0.98645 0.99602 0.96662 1.23519 0.97816 1.02047 0.95061 0.93930 0.89417 0.92170 0.89517 0.93800 0.89804 0.87842 0.93587 0.95376 0.92902 0.88603 0.92482 0.89225 0.93482 0.93180 0.89422 0.90938 0.90815 0.91359 0.88759 0.89851 0.91864 0.89002 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 11.01 113.37 1.25 1.81 16 2 O -0.41 -13.84 9.02 -148.98 -1.34 -15.19 16 3 C 0.04 1.29 6.28 71.98 0.45 1.74 16 4 C 0.13 4.20 5.79 86.38 0.50 4.70 16 5 N -0.99 -39.12 2.81 -519.83 -1.46 -40.58 16 6 C 0.23 10.48 3.64 85.63 0.31 10.79 16 7 C -0.50 -26.01 7.81 25.60 0.20 -25.81 16 8 H 0.06 3.30 8.06 -2.91 -0.02 3.28 16 9 C 0.04 1.94 5.47 84.65 0.46 2.40 16 10 N -0.93 -54.20 13.96 21.45 0.30 -53.90 16 11 Si 0.90 43.22 27.47 68.60 1.88 45.11 16 12 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 14 H -0.25 -11.67 6.54 99.48 0.65 -11.02 16 15 S 2.78 106.48 5.69 -56.49 -0.32 106.15 16 16 O -1.00 -37.91 15.45 -128.00 -1.98 -39.89 16 17 O -0.99 -42.88 10.70 -128.00 -1.37 -44.25 16 18 N -0.98 -32.32 2.90 -468.53 -1.36 -33.68 16 19 C 0.13 3.46 3.26 44.99 0.15 3.61 16 20 C -0.15 -3.66 9.05 71.98 0.65 -3.01 16 21 C -0.16 -3.33 7.88 71.98 0.57 -2.76 16 22 C 0.15 5.22 3.88 45.52 0.18 5.39 16 23 C -0.17 -7.02 5.49 31.12 0.17 -6.85 16 24 C -0.14 -4.99 7.38 31.12 0.23 -4.76 16 25 C -0.15 -4.26 7.18 31.12 0.22 -4.03 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 2.91 8.11 -2.38 -0.02 2.89 16 32 H 0.10 2.86 7.61 -2.39 -0.02 2.84 16 33 H 0.05 2.22 5.66 -2.39 -0.01 2.20 16 34 H 0.03 1.40 5.14 -2.38 -0.01 1.38 16 35 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.10 2.48 6.73 -2.39 -0.02 2.46 16 37 H 0.06 1.44 6.92 -2.38 -0.02 1.42 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.05 1.12 7.92 -2.39 -0.02 1.10 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.07 1.44 6.33 -2.39 -0.02 1.43 16 43 H 0.07 2.76 7.06 -2.39 -0.02 2.74 16 44 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 45 H 0.09 4.35 1.75 -4.93 -0.01 4.34 16 46 H 0.08 3.11 5.98 -2.38 -0.01 3.10 16 47 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 48 H 0.09 2.31 5.08 -2.39 -0.01 2.30 16 49 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -65.42 373.10 0.57 -64.86 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.88 Total: 28.16 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 5.34 Total: -16.79 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -2.52 Total: -128.16 kcal Atomic # 8 Polarization: -94.64 SS G_CDS: -4.69 Total: -99.33 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.11 kcal Atomic # 16 Polarization: 106.48 SS G_CDS: -0.32 Total: 106.15 kcal Total: -65.42 0.57 -64.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337093243.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.054 kcal (2) G-P(sol) polarization free energy of solvation -65.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds