Wall clock time and date at job start Tue Mar 31 2020 17:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 H 1.09004 * 109.46830 * 304.99600 * 3 2 1 5 5 C 1.52992 * 109.47210 * 65.00022 * 3 2 1 6 6 C 1.50706 * 109.46798 * 185.00261 * 3 2 1 7 7 C 1.38163 * 120.02719 * 299.97175 * 6 3 2 8 8 C 1.38243 * 120.05442 * 180.02562 * 7 6 3 9 9 C 1.38289 * 120.11362 * 0.02562 * 8 7 6 10 10 C 1.38125 * 120.05159 * 359.97438 * 9 8 7 11 11 C 1.38708 * 120.02782 * 119.99961 * 6 3 2 12 12 O 1.35898 * 120.05505 * 359.97438 * 11 6 3 13 13 C 1.42904 * 116.99940 * 179.97438 * 12 11 6 14 14 C 1.50706 * 109.47159 * 179.97438 * 13 12 11 15 15 O 1.21276 * 119.99777 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99995 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00168 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47101 * 180.02562 * 17 16 14 19 19 O 1.21291 * 120.00109 * 0.02562 * 18 17 16 20 20 N 1.34783 * 119.99581 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99638 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00494 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99919 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00095 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00180 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46741 * 60.00105 * 25 23 21 27 27 H 1.48493 * 109.47095 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46987 * 300.00320 * 25 23 21 29 29 H 1.08995 * 109.47570 * 60.00195 * 1 2 3 30 30 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47095 * 299.99737 * 1 2 3 32 32 H 1.09001 * 109.47430 * 239.99845 * 2 1 3 33 33 H 1.09007 * 109.47183 * 119.99817 * 2 1 3 34 34 H 1.09005 * 109.47188 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.47623 * 300.00190 * 5 3 2 36 36 H 1.09004 * 109.47569 * 60.00031 * 5 3 2 37 37 H 1.08001 * 119.97035 * 0.03182 * 7 6 3 38 38 H 1.08004 * 119.94085 * 180.02562 * 8 7 6 39 39 H 1.07993 * 119.96940 * 180.27537 * 9 8 7 40 40 H 1.08000 * 120.02369 * 180.02562 * 10 9 8 41 41 H 1.08999 * 109.47040 * 299.99833 * 13 12 11 42 42 H 1.08995 * 109.47340 * 59.99861 * 13 12 11 43 43 H 0.97006 * 119.99880 * 0.02562 * 16 14 13 44 44 H 1.08999 * 109.47173 * 300.00383 * 17 16 14 45 45 H 1.08995 * 109.46770 * 60.00144 * 17 16 14 46 46 H 0.96991 * 120.00077 * 359.97438 * 20 18 17 47 47 H 0.96997 * 120.00342 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4443 -0.1239 7 6 4.3154 0.8176 0.8342 8 6 5.6932 0.8193 0.7214 9 6 6.3009 1.4483 -0.3498 10 6 5.5320 2.0762 -1.3103 11 6 4.1489 2.0755 -1.1996 12 8 3.3903 2.6926 -2.1432 13 6 4.0832 3.3226 -3.2226 14 6 3.0855 3.9485 -4.1629 15 8 1.8981 3.8638 -3.9312 16 7 3.5129 4.6032 -5.2607 17 6 2.5431 5.2121 -6.1744 18 6 3.2738 5.8763 -7.3127 19 8 4.4855 5.8438 -7.3567 20 7 2.5809 6.5065 -8.2819 21 6 3.2457 7.1103 -9.3178 22 1 4.3246 7.0814 -9.3570 23 6 2.5314 7.7595 -10.3172 24 7 1.2186 7.7943 -10.2699 25 14 3.4371 8.5829 -11.7284 26 1 4.2384 7.5694 -12.4606 27 1 2.4541 9.2006 -12.6542 28 1 4.3390 9.6335 -11.1917 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.9982 3.1544 1.3071 35 1 0.5489 2.1252 1.3970 36 1 2.0698 1.5876 2.1492 37 1 3.8432 0.3259 1.6719 38 1 6.2961 0.3285 1.4711 39 1 7.3772 1.4444 -0.4380 40 1 6.0070 2.5670 -2.1469 41 1 4.7451 4.0938 -2.8286 42 1 4.6714 2.5789 -3.7601 43 1 4.4627 4.6712 -5.4458 44 1 1.8814 4.4408 -6.5686 45 1 1.9547 5.9556 -5.6368 46 1 1.6120 6.5321 -8.2469 47 1 0.7199 8.2478 -10.9674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344153314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:29 Heat of formation + Delta-G solvation = -103.180585 kcal Electronic energy + Delta-G solvation = -27647.152243 eV Core-core repulsion = 23601.650174 eV Total energy + Delta-G solvation = -4045.502069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73777 -39.57422 -38.29473 -37.52685 -36.21022 -34.53778 -33.76151 -31.48819 -31.40675 -30.51877 -29.45573 -28.64275 -26.88603 -25.00493 -24.49178 -22.96584 -22.11911 -20.51142 -19.91479 -19.64343 -18.40245 -18.20156 -17.34844 -16.52477 -16.37471 -15.90083 -15.53587 -15.33581 -15.06168 -14.83590 -14.67716 -14.50533 -14.28745 -14.05206 -13.91208 -13.62466 -13.42261 -13.06069 -12.81617 -12.53505 -12.30205 -12.26077 -12.06661 -11.98486 -11.90166 -11.67108 -11.54886 -11.26703 -11.13509 -10.92396 -10.72831 -10.58423 -10.53997 -10.35510 -9.81829 -9.67286 -9.06625 -8.94423 -8.70189 -8.33830 -8.15156 -6.55568 -3.98018 1.08611 1.21838 2.47940 2.61821 3.10647 3.19146 3.22579 3.52037 3.63368 3.68119 4.07608 4.38436 4.52477 4.62503 4.77937 4.80250 4.83542 4.86974 4.88406 4.90902 5.00317 5.11567 5.12711 5.26130 5.30676 5.38824 5.42448 5.44577 5.73185 5.78430 5.81409 5.82329 5.84274 5.88172 5.96210 5.99784 6.06415 6.12083 6.21414 6.28833 6.41361 6.50095 6.55422 7.15235 7.41751 7.63272 7.86605 8.26827 8.39967 8.99757 9.33829 9.81285 10.61048 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.001907 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.775185 B =14676.891835 C =15762.125258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.052 4.052 4 H 0.092 0.908 5 C -0.142 4.142 6 C -0.102 4.102 7 C -0.079 4.079 8 C -0.158 4.158 9 C -0.085 4.085 10 C -0.209 4.209 11 C 0.132 3.868 12 O -0.285 6.285 13 C 0.042 3.958 14 C 0.514 3.486 15 O -0.525 6.525 16 N -0.703 5.703 17 C 0.111 3.889 18 C 0.427 3.573 19 O -0.598 6.598 20 N -0.547 5.547 21 C -0.307 4.307 22 H 0.105 0.895 23 C 0.026 3.974 24 N -0.893 5.893 25 Si 0.935 3.065 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.412 0.588 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.396 0.604 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.111 -13.942 21.888 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.070 4.070 4 H 0.110 0.890 5 C -0.199 4.199 6 C -0.103 4.103 7 C -0.097 4.097 8 C -0.176 4.176 9 C -0.103 4.103 10 C -0.227 4.227 11 C 0.086 3.914 12 O -0.197 6.197 13 C -0.036 4.036 14 C 0.298 3.702 15 O -0.401 6.401 16 N -0.359 5.359 17 C -0.016 4.016 18 C 0.212 3.788 19 O -0.485 6.485 20 N -0.181 5.181 21 C -0.436 4.436 22 H 0.123 0.877 23 C -0.177 4.177 24 N -0.533 5.533 25 Si 0.761 3.239 26 H -0.197 1.197 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.250 0.750 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.230 0.770 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.670 -13.890 21.838 26.140 hybrid contribution 0.609 0.571 -0.985 1.291 sum 4.279 -13.318 20.854 25.111 Atomic orbital electron populations 1.21833 0.95675 1.01459 1.02219 1.21555 0.95917 0.95668 1.01826 1.20082 0.90232 0.96923 0.99812 0.88980 1.21871 1.01346 1.00463 0.96236 1.19238 0.96175 1.00931 0.93950 1.20824 0.93379 0.97766 0.97752 1.21030 0.94692 1.02599 0.99316 1.20920 0.99661 0.96106 0.93577 1.21289 0.92538 1.06364 1.02547 1.18884 0.89605 0.93524 0.89341 1.86138 1.33860 1.67116 1.32627 1.22458 0.94649 0.98319 0.88205 1.19875 0.89363 0.79277 0.81689 1.90739 1.16840 1.58806 1.73709 1.45506 1.11968 1.55021 1.23407 1.20976 0.91435 0.98306 0.90902 1.19689 0.88185 0.85543 0.85364 1.90494 1.13742 1.65550 1.78750 1.41788 1.09549 1.46352 1.20448 1.19681 0.93696 1.30336 0.99898 0.87681 1.25342 0.95601 0.97514 0.99228 1.69602 1.05561 1.42918 1.35247 0.85859 0.78710 0.79364 0.79960 1.19741 1.20823 1.19748 0.92358 0.92925 0.92515 0.92000 0.92190 0.92666 0.92114 0.92847 0.85564 0.86065 0.85855 0.85298 0.88842 0.88852 0.74990 0.89612 0.89606 0.76980 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 37.16 0.36 -0.92 16 2 C -0.11 -0.99 5.14 -26.73 -0.14 -1.13 16 3 C -0.05 -0.53 2.52 -91.77 -0.23 -0.76 16 4 H 0.09 1.17 6.99 -51.93 -0.36 0.81 16 5 C -0.14 -1.24 8.76 37.15 0.33 -0.91 16 6 C -0.10 -1.09 4.79 -104.47 -0.50 -1.59 16 7 C -0.08 -0.70 8.76 -39.61 -0.35 -1.04 16 8 C -0.16 -1.29 10.04 -39.56 -0.40 -1.69 16 9 C -0.08 -0.72 10.04 -39.60 -0.40 -1.12 16 10 C -0.21 -2.04 9.04 -39.43 -0.36 -2.39 16 11 C 0.13 1.54 6.66 -39.22 -0.26 1.28 16 12 O -0.29 -3.81 8.44 -39.33 -0.33 -4.14 16 13 C 0.04 0.49 5.22 36.01 0.19 0.67 16 14 C 0.51 7.84 7.91 -10.98 -0.09 7.76 16 15 O -0.53 -9.96 16.50 -14.35 -0.24 -10.20 16 16 N -0.70 -11.00 5.53 -61.48 -0.34 -11.34 16 17 C 0.11 1.98 6.15 -5.20 -0.03 1.94 16 18 C 0.43 9.50 7.85 -10.98 -0.09 9.41 16 19 O -0.60 -14.83 15.24 5.55 0.08 -14.75 16 20 N -0.55 -13.30 5.29 -10.96 -0.06 -13.36 16 21 C -0.31 -8.20 9.68 -14.93 -0.14 -8.34 16 22 H 0.11 2.91 7.16 -52.48 -0.38 2.54 16 23 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 24 N -0.89 -23.56 13.05 55.50 0.72 -22.84 16 25 Si 0.93 20.26 29.55 -169.99 -5.02 15.24 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.45 7.57 -51.92 -0.39 0.06 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 36 H 0.05 0.39 7.39 -51.93 -0.38 0.01 16 37 H 0.13 0.87 7.16 -52.49 -0.38 0.49 16 38 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 41 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 42 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 43 H 0.41 6.11 7.44 -40.82 -0.30 5.80 16 44 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 45 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 46 H 0.40 9.27 7.90 -40.82 -0.32 8.95 16 47 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -31.78 392.30 -8.31 -40.10 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -6.84 Total: 13.63 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.20 Total: 1.75 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.33 Total: -47.54 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.48 Total: -29.09 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.78 -8.31 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344153314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.085 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds