Wall clock time and date at job start Tue Mar 31 2020 17:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 H 1.09004 * 109.46830 * 304.99600 * 3 2 1 5 5 C 1.52992 * 109.47210 * 65.00022 * 3 2 1 6 6 C 1.50706 * 109.46798 * 185.00261 * 3 2 1 7 7 C 1.38163 * 120.02719 * 299.97175 * 6 3 2 8 8 C 1.38243 * 120.05442 * 180.02562 * 7 6 3 9 9 C 1.38289 * 120.11362 * 0.02562 * 8 7 6 10 10 C 1.38125 * 120.05159 * 359.97438 * 9 8 7 11 11 C 1.38708 * 120.02782 * 119.99961 * 6 3 2 12 12 O 1.35898 * 120.05505 * 359.97438 * 11 6 3 13 13 C 1.42904 * 116.99940 * 179.97438 * 12 11 6 14 14 C 1.50706 * 109.47159 * 179.97438 * 13 12 11 15 15 O 1.21276 * 119.99777 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99995 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00168 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47101 * 180.02562 * 17 16 14 19 19 O 1.21291 * 120.00109 * 0.02562 * 18 17 16 20 20 N 1.34783 * 119.99581 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99638 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00494 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99919 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00095 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00180 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46741 * 60.00105 * 25 23 21 27 27 H 1.48493 * 109.47095 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46987 * 300.00320 * 25 23 21 29 29 H 1.08995 * 109.47570 * 60.00195 * 1 2 3 30 30 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47095 * 299.99737 * 1 2 3 32 32 H 1.09001 * 109.47430 * 239.99845 * 2 1 3 33 33 H 1.09007 * 109.47183 * 119.99817 * 2 1 3 34 34 H 1.09005 * 109.47188 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.47623 * 300.00190 * 5 3 2 36 36 H 1.09004 * 109.47569 * 60.00031 * 5 3 2 37 37 H 1.08001 * 119.97035 * 0.03182 * 7 6 3 38 38 H 1.08004 * 119.94085 * 180.02562 * 8 7 6 39 39 H 1.07993 * 119.96940 * 180.27537 * 9 8 7 40 40 H 1.08000 * 120.02369 * 180.02562 * 10 9 8 41 41 H 1.08999 * 109.47040 * 299.99833 * 13 12 11 42 42 H 1.08995 * 109.47340 * 59.99861 * 13 12 11 43 43 H 0.97006 * 119.99880 * 0.02562 * 16 14 13 44 44 H 1.08999 * 109.47173 * 300.00383 * 17 16 14 45 45 H 1.08995 * 109.46770 * 60.00144 * 17 16 14 46 46 H 0.96991 * 120.00077 * 359.97438 * 20 18 17 47 47 H 0.96997 * 120.00342 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4443 -0.1239 7 6 4.3154 0.8176 0.8342 8 6 5.6932 0.8193 0.7214 9 6 6.3009 1.4483 -0.3498 10 6 5.5320 2.0762 -1.3103 11 6 4.1489 2.0755 -1.1996 12 8 3.3903 2.6926 -2.1432 13 6 4.0832 3.3226 -3.2226 14 6 3.0855 3.9485 -4.1629 15 8 1.8981 3.8638 -3.9312 16 7 3.5129 4.6032 -5.2607 17 6 2.5431 5.2121 -6.1744 18 6 3.2738 5.8763 -7.3127 19 8 4.4855 5.8438 -7.3567 20 7 2.5809 6.5065 -8.2819 21 6 3.2457 7.1103 -9.3178 22 1 4.3246 7.0814 -9.3570 23 6 2.5314 7.7595 -10.3172 24 7 1.2186 7.7943 -10.2699 25 14 3.4371 8.5829 -11.7284 26 1 4.2384 7.5694 -12.4606 27 1 2.4541 9.2006 -12.6542 28 1 4.3390 9.6335 -11.1917 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.9982 3.1544 1.3071 35 1 0.5489 2.1252 1.3970 36 1 2.0698 1.5876 2.1492 37 1 3.8432 0.3259 1.6719 38 1 6.2961 0.3285 1.4711 39 1 7.3772 1.4444 -0.4380 40 1 6.0070 2.5670 -2.1469 41 1 4.7451 4.0938 -2.8286 42 1 4.6714 2.5789 -3.7601 43 1 4.4627 4.6712 -5.4458 44 1 1.8814 4.4408 -6.5686 45 1 1.9547 5.9556 -5.6368 46 1 1.6120 6.5321 -8.2469 47 1 0.7199 8.2478 -10.9674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344153314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:28 Heat of formation + Delta-G solvation = -122.724466 kcal Electronic energy + Delta-G solvation = -27647.999730 eV Core-core repulsion = 23601.650174 eV Total energy + Delta-G solvation = -4046.349555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61513 -40.84959 -39.91549 -38.48266 -36.91034 -36.28154 -35.37834 -33.40091 -32.15579 -31.35029 -30.44437 -29.49009 -28.23994 -26.27239 -25.69732 -23.74638 -22.84435 -21.70246 -21.41919 -20.67643 -20.09703 -19.21964 -18.67306 -17.53994 -17.52323 -17.03214 -16.77860 -16.53900 -16.44648 -16.27832 -15.74877 -15.46626 -15.39146 -15.29730 -15.01610 -14.77564 -14.39217 -14.02446 -13.88358 -13.64920 -13.59435 -13.54501 -13.19399 -12.97533 -12.90254 -12.71116 -12.60424 -12.48076 -12.22156 -12.14430 -12.07853 -11.63173 -11.57286 -11.49216 -11.29977 -11.07216 -10.58936 -10.31414 -10.10822 -9.73766 -9.08207 -8.52044 -6.02585 0.41382 0.51348 1.36735 1.39650 1.40917 1.45026 1.54475 1.88924 2.26509 2.60503 2.84123 3.09456 3.14993 3.51528 3.68700 3.88409 3.95641 4.04677 4.13003 4.17509 4.18934 4.23472 4.34073 4.39237 4.40135 4.48048 4.55703 4.61431 4.71495 4.75839 4.76256 5.05605 5.10900 5.11946 5.14322 5.15608 5.26063 5.37034 5.37122 5.45222 5.52760 5.62525 5.67277 5.86970 5.90105 6.31061 6.44374 6.47635 7.01266 7.03163 7.42197 7.91783 8.64481 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.001907 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.775185 B =14676.891835 C =15762.125258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.051 4.051 4 H 0.056 0.944 5 C -0.138 4.138 6 C -0.119 4.119 7 C -0.082 4.082 8 C -0.156 4.156 9 C -0.090 4.090 10 C -0.215 4.215 11 C 0.103 3.897 12 O -0.313 6.313 13 C 0.048 3.952 14 C 0.516 3.484 15 O -0.567 6.567 16 N -0.700 5.700 17 C 0.122 3.878 18 C 0.433 3.567 19 O -0.622 6.622 20 N -0.559 5.559 21 C -0.338 4.338 22 H 0.088 0.912 23 C -0.011 4.011 24 N -0.916 5.916 25 Si 0.998 3.002 26 H -0.269 1.269 27 H -0.273 1.273 28 H -0.269 1.269 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.418 0.582 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.399 0.601 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 -14.843 23.256 28.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.069 4.069 4 H 0.075 0.925 5 C -0.195 4.195 6 C -0.119 4.119 7 C -0.100 4.100 8 C -0.174 4.174 9 C -0.107 4.107 10 C -0.233 4.233 11 C 0.058 3.942 12 O -0.226 6.226 13 C -0.030 4.030 14 C 0.302 3.698 15 O -0.445 6.445 16 N -0.355 5.355 17 C -0.005 4.005 18 C 0.220 3.780 19 O -0.511 6.511 20 N -0.194 5.194 21 C -0.467 4.467 22 H 0.106 0.894 23 C -0.212 4.212 24 N -0.556 5.556 25 Si 0.821 3.179 26 H -0.194 1.194 27 H -0.197 1.197 28 H -0.194 1.194 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.257 0.743 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.233 0.767 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.164 -14.802 23.223 28.019 hybrid contribution 0.183 0.790 -1.315 1.545 sum 5.347 -14.011 21.908 26.549 Atomic orbital electron populations 1.21829 0.95398 1.02059 1.01806 1.21521 0.96139 0.94797 1.02037 1.20007 0.90423 0.97386 0.99113 0.92549 1.21839 1.01723 0.99799 0.96101 1.19449 0.96382 1.01582 0.94507 1.21078 0.93812 0.97346 0.97727 1.21409 0.94678 1.01748 0.99561 1.21280 1.00897 0.95404 0.93165 1.21527 0.91842 1.06522 1.03450 1.19175 0.90506 0.94852 0.89678 1.86093 1.35209 1.67907 1.33425 1.22490 0.93342 0.99535 0.87671 1.20521 0.89504 0.78275 0.81472 1.90722 1.18882 1.60305 1.74596 1.45467 1.11819 1.54959 1.23301 1.20786 0.91435 0.98561 0.89748 1.20346 0.87980 0.84169 0.85475 1.90472 1.15064 1.66090 1.79428 1.41849 1.09680 1.47113 1.20800 1.19710 0.93260 1.32172 1.01547 0.89402 1.26152 0.96387 0.97553 1.01131 1.69673 1.06547 1.43296 1.36064 0.84918 0.77719 0.78336 0.76968 1.19422 1.19735 1.19432 0.94173 0.91788 0.91538 0.93368 0.90234 0.93920 0.91672 0.90947 0.83582 0.83454 0.83479 0.83880 0.86254 0.86278 0.74291 0.88690 0.88674 0.76706 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.67 71.98 0.70 -1.80 16 2 C -0.11 -1.85 5.14 30.59 0.16 -1.69 16 3 C -0.05 -1.05 2.52 -11.54 -0.03 -1.08 16 4 H 0.06 1.56 6.99 -2.38 -0.02 1.54 16 5 C -0.14 -2.33 8.76 71.98 0.63 -1.69 16 6 C -0.12 -2.45 4.79 -19.77 -0.09 -2.55 16 7 C -0.08 -1.26 8.76 22.25 0.19 -1.07 16 8 C -0.16 -2.09 10.04 22.28 0.22 -1.87 16 9 C -0.09 -1.29 10.04 22.25 0.22 -1.06 16 10 C -0.21 -3.83 9.04 22.36 0.20 -3.63 16 11 C 0.10 2.35 6.66 22.50 0.15 2.50 16 12 O -0.31 -8.50 8.44 -73.37 -0.62 -9.12 16 13 C 0.05 1.05 5.22 71.24 0.37 1.42 16 14 C 0.52 15.68 7.91 87.66 0.69 16.37 16 15 O -0.57 -21.97 16.50 16.02 0.26 -21.71 16 16 N -0.70 -21.56 5.53 -466.80 -2.58 -24.14 16 17 C 0.12 4.34 6.15 85.63 0.53 4.87 16 18 C 0.43 19.45 7.85 87.65 0.69 20.14 16 19 O -0.62 -31.05 15.24 -3.06 -0.05 -31.09 16 20 N -0.56 -27.66 5.29 -306.98 -1.62 -29.28 16 21 C -0.34 -18.34 9.68 84.04 0.81 -17.52 16 22 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 24 N -0.92 -48.37 13.05 21.66 0.28 -48.08 16 25 Si 1.00 41.28 29.55 68.60 2.03 43.31 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 27 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 28 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.07 0.94 6.57 -2.39 -0.02 0.92 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.05 7.57 -2.38 -0.02 1.03 16 34 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.06 1.01 6.57 -2.39 -0.02 1.00 16 36 H 0.07 0.93 7.39 -2.38 -0.02 0.91 16 37 H 0.15 1.57 7.16 -2.91 -0.02 1.55 16 38 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.14 1.98 6.30 -2.91 -0.02 1.96 16 41 H 0.12 1.99 7.66 -2.39 -0.02 1.98 16 42 H 0.12 1.99 7.66 -2.39 -0.02 1.97 16 43 H 0.42 12.06 7.44 -92.70 -0.69 11.37 16 44 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 45 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 46 H 0.40 19.03 7.90 -92.72 -0.73 18.29 16 47 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -69.76 392.30 3.21 -66.56 By element: Atomic # 1 Polarization: 42.77 SS G_CDS: -0.42 Total: 42.35 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 5.91 Total: 11.21 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -3.92 Total: -101.51 kcal Atomic # 8 Polarization: -61.52 SS G_CDS: -0.40 Total: -61.92 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -69.76 3.21 -66.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344153314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.169 kcal (2) G-P(sol) polarization free energy of solvation -69.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds