Wall clock time and date at job start Tue Mar 31 2020 17:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53010 * 109.46973 * 2 1 4 4 H 1.08997 * 109.46927 * 54.99834 * 3 2 1 5 5 C 1.53001 * 109.46913 * 294.99867 * 3 2 1 6 6 C 1.50693 * 109.46795 * 174.99644 * 3 2 1 7 7 C 1.38169 * 120.02813 * 60.00183 * 6 3 2 8 8 C 1.38243 * 120.05455 * 179.97438 * 7 6 3 9 9 C 1.38295 * 120.11401 * 0.04496 * 8 7 6 10 10 C 1.38122 * 120.05026 * 359.97438 * 9 8 7 11 11 C 1.38712 * 120.02675 * 239.97416 * 6 3 2 12 12 O 1.35897 * 120.05621 * 0.04919 * 11 6 3 13 13 C 1.42904 * 116.99781 * 179.97438 * 12 11 6 14 14 C 1.50703 * 109.46628 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00529 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99919 * 180.02562 * 14 13 12 17 17 C 1.46495 * 120.00212 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47160 * 179.97438 * 17 16 14 19 19 O 1.21289 * 119.99855 * 0.02562 * 18 17 16 20 20 N 1.34769 * 119.99898 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00208 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99545 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00333 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00374 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00121 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47240 * 90.00033 * 25 23 21 27 27 H 1.48500 * 109.47128 * 210.00279 * 25 23 21 28 28 H 1.48501 * 109.46839 * 330.00131 * 25 23 21 29 29 H 1.08995 * 109.47218 * 300.00131 * 1 2 3 30 30 H 1.09004 * 109.46580 * 60.00591 * 1 2 3 31 31 H 1.08994 * 109.46784 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47218 * 239.99869 * 2 1 3 33 33 H 1.08997 * 109.47236 * 119.99366 * 2 1 3 34 34 H 1.08997 * 109.46844 * 300.00024 * 5 3 2 35 35 H 1.08997 * 109.47191 * 59.99843 * 5 3 2 36 36 H 1.09002 * 109.46892 * 180.02562 * 5 3 2 37 37 H 1.07998 * 119.97356 * 359.97438 * 7 6 3 38 38 H 1.07997 * 119.94707 * 180.02562 * 8 7 6 39 39 H 1.07997 * 119.97026 * 179.70067 * 9 8 7 40 40 H 1.08002 * 120.02294 * 179.97438 * 10 9 8 41 41 H 1.08993 * 109.47145 * 299.99865 * 13 12 11 42 42 H 1.08996 * 109.47124 * 60.00356 * 13 12 11 43 43 H 0.97000 * 119.99786 * 0.02562 * 16 14 13 44 44 H 1.09001 * 109.47236 * 300.00264 * 17 16 14 45 45 H 1.08996 * 109.46939 * 59.99980 * 17 16 14 46 46 H 0.97008 * 120.00359 * 0.02562 * 20 18 17 47 47 H 0.96999 * 120.00876 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5419 1.4444 0.1239 7 6 4.3154 0.8172 -0.8339 8 6 5.6932 0.8190 -0.7210 9 6 6.3008 1.4472 0.3507 10 6 5.5319 2.0752 1.3110 11 6 4.1489 2.0761 1.1994 12 8 3.3902 2.6932 2.1429 13 6 4.0831 3.3227 3.2226 14 6 3.0854 3.9487 4.1627 15 8 1.8980 3.8646 3.9307 16 7 3.5127 4.6031 5.2608 17 6 2.5429 5.2121 6.1744 18 6 3.2735 5.8759 7.3131 19 8 4.4852 5.8438 7.3569 20 7 2.5806 6.5060 8.2822 21 6 3.2453 7.1103 9.3179 22 1 4.3242 7.0810 9.3573 23 6 2.5310 7.7595 10.3173 24 7 3.1680 8.3383 11.3102 25 14 0.6648 7.8096 10.2494 26 1 0.1117 6.6310 10.9638 27 1 0.1792 9.0542 10.8977 28 1 0.2202 7.7833 8.8328 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.0699 1.5875 -2.1491 35 1 0.5490 2.1252 -1.3970 36 1 1.9990 3.1541 -1.3076 37 1 3.8433 0.3253 -1.6714 38 1 6.2962 0.3286 -1.4709 39 1 7.3772 1.4430 0.4391 40 1 6.0068 2.5654 2.1480 41 1 4.6709 2.5787 3.7601 42 1 4.7453 4.0938 2.8290 43 1 4.4624 4.6714 5.4458 44 1 1.9547 5.9559 5.6369 45 1 1.8809 4.4410 6.5683 46 1 1.6115 6.5320 8.2470 47 1 2.6694 8.7919 12.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344153315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:32 Heat of formation + Delta-G solvation = -95.988589 kcal Electronic energy + Delta-G solvation = -27709.968779 eV Core-core repulsion = 23664.778578 eV Total energy + Delta-G solvation = -4045.190201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77724 -39.66904 -38.46150 -37.59254 -36.23996 -34.62568 -33.84969 -31.86915 -31.47672 -30.56680 -29.53686 -28.70726 -27.04661 -25.03576 -24.35903 -22.98028 -22.14645 -20.57371 -19.95839 -19.69576 -18.74827 -18.43562 -17.34816 -16.57943 -16.43293 -15.92743 -15.68135 -15.32634 -15.17915 -14.95553 -14.73502 -14.69784 -14.34837 -14.05516 -13.88578 -13.63318 -13.20303 -13.10499 -12.86559 -12.58708 -12.54503 -12.34324 -12.23578 -12.12007 -12.09435 -11.93467 -11.58092 -11.31864 -11.26554 -10.95522 -10.76150 -10.68333 -10.61562 -10.11246 -9.90043 -9.75273 -9.09175 -9.04979 -8.85072 -8.36856 -8.36008 -6.45524 -3.98554 1.06072 1.19109 2.41496 2.53796 2.95978 3.00883 3.09464 3.49059 3.49518 3.56291 3.99340 4.35446 4.43228 4.50681 4.58520 4.75155 4.78742 4.82791 4.84455 4.87604 4.97386 5.08898 5.09099 5.23023 5.27615 5.35665 5.39450 5.41463 5.58754 5.69728 5.70293 5.72330 5.75362 5.78335 5.81150 5.92926 6.03319 6.09352 6.18286 6.26403 6.37544 6.38768 6.51229 7.11411 7.38226 7.54852 7.94199 8.18039 8.39339 8.76236 9.24180 9.56662 10.66404 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019034 B = 0.002025 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.699033 B =13821.509772 C =15036.858865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.052 4.052 4 H 0.092 0.908 5 C -0.142 4.142 6 C -0.102 4.102 7 C -0.079 4.079 8 C -0.158 4.158 9 C -0.084 4.084 10 C -0.208 4.208 11 C 0.132 3.868 12 O -0.286 6.286 13 C 0.042 3.958 14 C 0.515 3.485 15 O -0.525 6.525 16 N -0.704 5.704 17 C 0.108 3.892 18 C 0.437 3.563 19 O -0.580 6.580 20 N -0.574 5.574 21 C -0.311 4.311 22 H 0.122 0.878 23 C 0.046 3.954 24 N -0.872 5.872 25 Si 0.879 3.121 26 H -0.268 1.268 27 H -0.274 1.274 28 H -0.267 1.267 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.413 0.587 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.375 0.625 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 -15.444 -24.647 29.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.070 4.070 4 H 0.110 0.890 5 C -0.199 4.199 6 C -0.103 4.103 7 C -0.097 4.097 8 C -0.176 4.176 9 C -0.102 4.102 10 C -0.227 4.227 11 C 0.086 3.914 12 O -0.198 6.198 13 C -0.036 4.036 14 C 0.299 3.701 15 O -0.401 6.401 16 N -0.360 5.360 17 C -0.019 4.019 18 C 0.223 3.777 19 O -0.464 6.464 20 N -0.212 5.212 21 C -0.440 4.440 22 H 0.140 0.860 23 C -0.159 4.159 24 N -0.511 5.511 25 Si 0.705 3.295 26 H -0.193 1.193 27 H -0.199 1.199 28 H -0.192 1.192 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.252 0.748 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.208 0.792 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.539 -15.355 -24.525 28.940 hybrid contribution -0.615 0.305 0.423 0.807 sum -1.154 -15.049 -24.101 28.437 Atomic orbital electron populations 1.21832 0.95689 1.01466 1.02193 1.21557 0.95902 0.95672 1.01848 1.20078 0.90243 0.96913 0.99787 0.89018 1.21872 1.01331 1.00473 0.96253 1.19234 0.96162 1.00933 0.93976 1.20826 0.93385 0.97758 0.97752 1.21037 0.94692 1.02561 0.99303 1.20928 0.99691 0.96069 0.93553 1.21292 0.92525 1.06343 1.02548 1.18878 0.89604 0.93572 0.89341 1.86132 1.33864 1.67170 1.32616 1.22450 0.94596 0.98387 0.88211 1.19889 0.89378 0.79171 0.81620 1.90737 1.16854 1.58798 1.73707 1.45490 1.11963 1.55121 1.23417 1.20997 0.91579 0.98392 0.90932 1.19578 0.88212 0.85042 0.84910 1.90539 1.13547 1.64260 1.78080 1.42123 1.07990 1.48777 1.22273 1.19438 0.95369 1.30338 0.98826 0.86040 1.25075 0.98833 0.96475 0.95505 1.69611 1.36223 1.34076 1.11196 0.86669 0.84911 0.79139 0.78771 1.19346 1.19921 1.19209 0.92393 0.92512 0.92914 0.92167 0.91997 0.92831 0.92121 0.92666 0.85556 0.86042 0.85820 0.85279 0.88771 0.88763 0.74842 0.89480 0.89477 0.79193 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.67 37.16 0.36 -0.87 16 2 C -0.11 -0.96 5.14 -26.72 -0.14 -1.09 16 3 C -0.05 -0.51 2.53 -91.77 -0.23 -0.74 16 4 H 0.09 1.13 6.99 -51.93 -0.36 0.77 16 5 C -0.14 -1.19 8.76 37.16 0.33 -0.87 16 6 C -0.10 -1.05 4.79 -104.48 -0.50 -1.55 16 7 C -0.08 -0.67 8.76 -39.60 -0.35 -1.02 16 8 C -0.16 -1.25 10.04 -39.56 -0.40 -1.65 16 9 C -0.08 -0.70 10.04 -39.60 -0.40 -1.10 16 10 C -0.21 -1.97 9.04 -39.43 -0.36 -2.33 16 11 C 0.13 1.48 6.66 -39.22 -0.26 1.22 16 12 O -0.29 -3.68 8.44 -39.33 -0.33 -4.01 16 13 C 0.04 0.46 5.22 36.01 0.19 0.65 16 14 C 0.52 7.46 7.91 -10.98 -0.09 7.37 16 15 O -0.53 -9.49 16.50 -14.35 -0.24 -9.73 16 16 N -0.70 -10.40 5.53 -61.47 -0.34 -10.74 16 17 C 0.11 1.79 6.15 -5.20 -0.03 1.76 16 18 C 0.44 9.27 7.85 -10.99 -0.09 9.18 16 19 O -0.58 -14.13 15.24 5.55 0.08 -14.05 16 20 N -0.57 -13.03 5.09 -10.96 -0.06 -13.09 16 21 C -0.31 -8.42 10.16 -14.93 -0.15 -8.57 16 22 H 0.12 3.74 7.39 -52.48 -0.39 3.36 16 23 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 24 N -0.87 -24.58 13.96 55.50 0.77 -23.80 16 25 Si 0.88 18.71 27.74 -169.99 -4.71 13.99 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 28 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.41 6.57 -51.93 -0.34 0.06 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.44 7.57 -51.93 -0.39 0.04 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.38 7.39 -51.93 -0.38 0.00 16 35 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.13 0.84 7.16 -52.49 -0.38 0.46 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 1.00 6.30 -52.49 -0.33 0.66 16 41 H 0.09 0.81 7.66 -51.93 -0.40 0.42 16 42 H 0.09 0.82 7.66 -51.93 -0.40 0.42 16 43 H 0.41 5.82 7.44 -40.82 -0.30 5.52 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.37 7.50 5.76 -40.82 -0.24 7.26 16 47 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 389.18 15.07 5.86 5.86 Total: -1.00 -32.90 389.18 -7.97 -40.87 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -6.80 Total: 13.19 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -2.21 Total: 1.50 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.38 Total: -47.63 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.48 Total: -27.78 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.71 Total: 13.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.90 -7.97 -40.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344153315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.120 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds