Wall clock time and date at job start Tue Mar 31 2020 17:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53010 * 109.46973 * 2 1 4 4 H 1.08997 * 109.46927 * 54.99834 * 3 2 1 5 5 C 1.53001 * 109.46913 * 294.99867 * 3 2 1 6 6 C 1.50693 * 109.46795 * 174.99644 * 3 2 1 7 7 C 1.38169 * 120.02813 * 60.00183 * 6 3 2 8 8 C 1.38243 * 120.05455 * 179.97438 * 7 6 3 9 9 C 1.38295 * 120.11401 * 0.04496 * 8 7 6 10 10 C 1.38122 * 120.05026 * 359.97438 * 9 8 7 11 11 C 1.38712 * 120.02675 * 239.97416 * 6 3 2 12 12 O 1.35897 * 120.05621 * 0.04919 * 11 6 3 13 13 C 1.42904 * 116.99781 * 179.97438 * 12 11 6 14 14 C 1.50703 * 109.46628 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00529 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99919 * 180.02562 * 14 13 12 17 17 C 1.46495 * 120.00212 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47160 * 179.97438 * 17 16 14 19 19 O 1.21289 * 119.99855 * 0.02562 * 18 17 16 20 20 N 1.34769 * 119.99898 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00208 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99545 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00333 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00374 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00121 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47240 * 90.00033 * 25 23 21 27 27 H 1.48500 * 109.47128 * 210.00279 * 25 23 21 28 28 H 1.48501 * 109.46839 * 330.00131 * 25 23 21 29 29 H 1.08995 * 109.47218 * 300.00131 * 1 2 3 30 30 H 1.09004 * 109.46580 * 60.00591 * 1 2 3 31 31 H 1.08994 * 109.46784 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47218 * 239.99869 * 2 1 3 33 33 H 1.08997 * 109.47236 * 119.99366 * 2 1 3 34 34 H 1.08997 * 109.46844 * 300.00024 * 5 3 2 35 35 H 1.08997 * 109.47191 * 59.99843 * 5 3 2 36 36 H 1.09002 * 109.46892 * 180.02562 * 5 3 2 37 37 H 1.07998 * 119.97356 * 359.97438 * 7 6 3 38 38 H 1.07997 * 119.94707 * 180.02562 * 8 7 6 39 39 H 1.07997 * 119.97026 * 179.70067 * 9 8 7 40 40 H 1.08002 * 120.02294 * 179.97438 * 10 9 8 41 41 H 1.08993 * 109.47145 * 299.99865 * 13 12 11 42 42 H 1.08996 * 109.47124 * 60.00356 * 13 12 11 43 43 H 0.97000 * 119.99786 * 0.02562 * 16 14 13 44 44 H 1.09001 * 109.47236 * 300.00264 * 17 16 14 45 45 H 1.08996 * 109.46939 * 59.99980 * 17 16 14 46 46 H 0.97008 * 120.00359 * 0.02562 * 20 18 17 47 47 H 0.96999 * 120.00876 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5419 1.4444 0.1239 7 6 4.3154 0.8172 -0.8339 8 6 5.6932 0.8190 -0.7210 9 6 6.3008 1.4472 0.3507 10 6 5.5319 2.0752 1.3110 11 6 4.1489 2.0761 1.1994 12 8 3.3902 2.6932 2.1429 13 6 4.0831 3.3227 3.2226 14 6 3.0854 3.9487 4.1627 15 8 1.8980 3.8646 3.9307 16 7 3.5127 4.6031 5.2608 17 6 2.5429 5.2121 6.1744 18 6 3.2735 5.8759 7.3131 19 8 4.4852 5.8438 7.3569 20 7 2.5806 6.5060 8.2822 21 6 3.2453 7.1103 9.3179 22 1 4.3242 7.0810 9.3573 23 6 2.5310 7.7595 10.3173 24 7 3.1680 8.3383 11.3102 25 14 0.6648 7.8096 10.2494 26 1 0.1117 6.6310 10.9638 27 1 0.1792 9.0542 10.8977 28 1 0.2202 7.7833 8.8328 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.0699 1.5875 -2.1491 35 1 0.5490 2.1252 -1.3970 36 1 1.9990 3.1541 -1.3076 37 1 3.8433 0.3253 -1.6714 38 1 6.2962 0.3286 -1.4709 39 1 7.3772 1.4430 0.4391 40 1 6.0068 2.5654 2.1480 41 1 4.6709 2.5787 3.7601 42 1 4.7453 4.0938 2.8290 43 1 4.4624 4.6714 5.4458 44 1 1.9547 5.9559 5.6369 45 1 1.8809 4.4410 6.5683 46 1 1.6115 6.5320 8.2470 47 1 2.6694 8.7919 12.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344153315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:31 Heat of formation + Delta-G solvation = -117.555736 kcal Electronic energy + Delta-G solvation = -27710.904000 eV Core-core repulsion = 23664.778578 eV Total energy + Delta-G solvation = -4046.125422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.61975 -40.90581 -40.01330 -38.48449 -36.90914 -36.32418 -35.40808 -33.85568 -32.15884 -31.36903 -30.48743 -29.51436 -28.32812 -26.10697 -25.69412 -23.73414 -22.84256 -21.69070 -21.50851 -20.72330 -20.51235 -19.21856 -18.63672 -17.59453 -17.52768 -17.05049 -16.84950 -16.53186 -16.49595 -16.40813 -15.62395 -15.41702 -15.32179 -15.26804 -14.95655 -14.78086 -14.41204 -14.30218 -14.07348 -13.90292 -13.65340 -13.61263 -13.19633 -12.99155 -12.95837 -12.71210 -12.60115 -12.46026 -12.22118 -12.07744 -12.01757 -11.62863 -11.59719 -11.49054 -11.29851 -11.07147 -10.68820 -10.36921 -10.27870 -9.73957 -9.08276 -8.46880 -6.09042 0.41146 0.51139 1.29824 1.32908 1.40208 1.40374 1.44482 1.77104 2.19086 2.53132 2.83877 2.87593 3.09252 3.51181 3.68712 3.88404 3.93777 3.99712 4.05026 4.13385 4.17792 4.23496 4.33942 4.37261 4.37708 4.47993 4.55817 4.61647 4.71618 4.75814 4.76559 5.05980 5.11292 5.11809 5.12546 5.15812 5.26204 5.37123 5.45171 5.46363 5.52955 5.62530 5.67286 5.86393 5.86889 6.30422 6.44854 6.46462 6.76483 7.01356 7.27347 7.75351 8.69324 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019034 B = 0.002025 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.699033 B =13821.509772 C =15036.858865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.050 4.050 4 H 0.058 0.942 5 C -0.138 4.138 6 C -0.118 4.118 7 C -0.082 4.082 8 C -0.156 4.156 9 C -0.090 4.090 10 C -0.215 4.215 11 C 0.103 3.897 12 O -0.312 6.312 13 C 0.046 3.954 14 C 0.518 3.482 15 O -0.563 6.563 16 N -0.703 5.703 17 C 0.119 3.881 18 C 0.446 3.554 19 O -0.613 6.613 20 N -0.578 5.578 21 C -0.331 4.331 22 H 0.065 0.935 23 C -0.008 4.008 24 N -0.925 5.925 25 Si 0.958 3.042 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.233 1.233 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.418 0.582 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.392 0.608 47 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 -16.893 -27.173 32.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.069 4.069 4 H 0.076 0.924 5 C -0.195 4.195 6 C -0.119 4.119 7 C -0.100 4.100 8 C -0.174 4.174 9 C -0.108 4.108 10 C -0.234 4.234 11 C 0.059 3.941 12 O -0.225 6.225 13 C -0.032 4.032 14 C 0.305 3.695 15 O -0.442 6.442 16 N -0.359 5.359 17 C -0.009 4.009 18 C 0.233 3.767 19 O -0.499 6.499 20 N -0.218 5.218 21 C -0.460 4.460 22 H 0.083 0.917 23 C -0.208 4.208 24 N -0.564 5.564 25 Si 0.778 3.222 26 H -0.181 1.181 27 H -0.199 1.199 28 H -0.156 1.156 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.257 0.743 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.228 0.772 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.513 -16.819 -27.077 31.911 hybrid contribution -0.137 0.697 1.137 1.341 sum -1.650 -16.122 -25.940 30.586 Atomic orbital electron populations 1.21827 0.95358 1.02048 1.01840 1.21524 0.96171 0.94819 1.02015 1.20003 0.90343 0.97368 0.99136 0.92393 1.21841 1.01736 0.99811 0.96104 1.19450 0.96426 1.01533 0.94493 1.21079 0.93786 0.97360 0.97757 1.21406 0.94717 1.01768 0.99545 1.21278 1.00882 0.95444 0.93202 1.21526 0.91906 1.06511 1.03416 1.19158 0.90449 0.94831 0.89692 1.86088 1.35135 1.67907 1.33378 1.22501 0.93474 0.99545 0.87722 1.20442 0.89467 0.78226 0.81383 1.90720 1.18689 1.60228 1.74538 1.45488 1.11875 1.55101 1.23389 1.20899 0.91458 0.99063 0.89451 1.20436 0.87948 0.83245 0.85062 1.90529 1.15543 1.64899 1.78917 1.41937 1.08743 1.49279 1.21797 1.19027 0.93398 1.32384 1.01185 0.91700 1.26062 1.05265 0.95202 0.94301 1.69772 1.39019 1.35277 1.12350 0.85457 0.76617 0.79342 0.80788 1.18115 1.19851 1.15624 0.94054 0.91561 0.91842 0.90336 0.93346 0.91049 0.91621 0.93891 0.83605 0.83525 0.83571 0.83915 0.86366 0.86347 0.74345 0.87692 0.87615 0.77224 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.67 71.98 0.70 -1.63 16 2 C -0.11 -1.75 5.14 30.60 0.16 -1.60 16 3 C -0.05 -0.98 2.53 -11.54 -0.03 -1.01 16 4 H 0.06 1.52 6.99 -2.39 -0.02 1.50 16 5 C -0.14 -2.20 8.76 71.98 0.63 -1.57 16 6 C -0.12 -2.35 4.79 -19.77 -0.09 -2.44 16 7 C -0.08 -1.22 8.76 22.25 0.19 -1.03 16 8 C -0.16 -2.04 10.04 22.28 0.22 -1.82 16 9 C -0.09 -1.27 10.04 22.26 0.22 -1.04 16 10 C -0.22 -3.71 9.04 22.37 0.20 -3.51 16 11 C 0.10 2.27 6.66 22.51 0.15 2.42 16 12 O -0.31 -8.02 8.44 -73.35 -0.62 -8.64 16 13 C 0.05 0.94 5.22 71.24 0.37 1.32 16 14 C 0.52 14.52 7.91 87.66 0.69 15.22 16 15 O -0.56 -20.14 16.50 16.01 0.26 -19.88 16 16 N -0.70 -19.89 5.53 -466.79 -2.58 -22.47 16 17 C 0.12 3.72 6.15 85.63 0.53 4.25 16 18 C 0.45 18.76 7.85 87.66 0.69 19.45 16 19 O -0.61 -30.43 15.24 -3.06 -0.05 -30.47 16 20 N -0.58 -26.00 5.09 -306.99 -1.56 -27.56 16 21 C -0.33 -18.49 10.16 84.04 0.85 -17.64 16 22 H 0.06 4.28 7.39 -2.91 -0.02 4.26 16 23 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 24 N -0.92 -53.80 13.96 21.66 0.30 -53.50 16 25 Si 0.96 37.71 27.74 68.60 1.90 39.61 16 26 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 27 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 28 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.86 6.57 -2.38 -0.02 0.85 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.98 7.57 -2.39 -0.02 0.96 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.86 7.39 -2.39 -0.02 0.85 16 35 H 0.06 0.95 6.56 -2.39 -0.02 0.94 16 36 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.15 1.50 7.16 -2.91 -0.02 1.48 16 38 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 39 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.14 1.91 6.30 -2.91 -0.02 1.89 16 41 H 0.12 1.85 7.66 -2.39 -0.02 1.83 16 42 H 0.12 1.85 7.66 -2.39 -0.02 1.83 16 43 H 0.42 11.35 7.44 -92.71 -0.69 10.66 16 44 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 45 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 46 H 0.39 14.81 5.76 -92.70 -0.53 14.28 16 47 H 0.28 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -75.92 389.18 3.34 -72.58 By element: Atomic # 1 Polarization: 41.22 SS G_CDS: -0.28 Total: 40.94 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 5.96 Total: 9.40 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -3.84 Total: -103.53 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -0.40 Total: -59.00 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 1.90 Total: 39.61 kcal Total: -75.92 3.34 -72.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344153315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.979 kcal (2) G-P(sol) polarization free energy of solvation -75.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds