Wall clock time and date at job start Tue Mar 31 2020 17:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08994 * 109.47465 * 305.00017 * 3 2 1 5 5 C 1.53003 * 109.47015 * 184.99741 * 3 2 1 6 6 C 1.50706 * 109.46765 * 65.00203 * 5 3 2 7 7 O 1.21281 * 119.99986 * 359.97438 * 6 5 3 8 8 N 1.34777 * 119.99592 * 180.02562 * 6 5 3 9 9 C 1.46502 * 119.99510 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.47048 * 180.02562 * 9 8 6 11 11 O 1.21288 * 119.99574 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99788 * 180.02562 * 10 9 8 13 13 C 1.37105 * 119.99341 * 179.97438 * 12 10 9 14 14 H 1.07993 * 120.00401 * 0.02562 * 13 12 10 15 15 C 1.38946 * 119.99497 * 179.97438 * 13 12 10 16 16 N 1.31408 * 120.00230 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99918 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47082 * 90.00105 * 17 15 13 19 19 H 1.48496 * 109.47220 * 210.00117 * 17 15 13 20 20 H 1.48492 * 109.46888 * 330.00137 * 17 15 13 21 21 C 1.50704 * 109.47295 * 65.00435 * 3 2 1 22 22 C 1.38264 * 119.94445 * 59.71981 * 21 3 2 23 23 C 1.38143 * 120.05448 * 179.73084 * 22 21 3 24 24 C 1.38737 * 119.94125 * 0.54746 * 23 22 21 25 25 O 1.35896 * 120.05251 * 179.75275 * 24 23 22 26 26 C 1.42900 * 117.00480 * 359.97150 * 25 24 23 27 27 C 1.38731 * 119.89094 * 359.72411 * 24 23 22 28 28 C 1.38147 * 119.94396 * 0.02562 * 27 24 23 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 32 32 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 33 33 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 34 34 H 1.08997 * 109.47571 * 184.99825 * 5 3 2 35 35 H 1.09000 * 109.47046 * 305.00930 * 5 3 2 36 36 H 0.96991 * 120.00379 * 359.97438 * 8 6 5 37 37 H 1.09004 * 109.47483 * 299.99376 * 9 8 6 38 38 H 1.09001 * 109.47518 * 59.99984 * 9 8 6 39 39 H 0.96998 * 120.00317 * 359.97438 * 12 10 9 40 40 H 0.97004 * 119.99845 * 180.02562 * 16 15 13 41 41 H 1.07997 * 119.97320 * 0.02562 * 22 21 3 42 42 H 1.08003 * 120.03173 * 180.27301 * 23 22 21 43 43 H 1.08998 * 109.47060 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.47230 * 300.00912 * 26 25 24 45 45 H 1.09007 * 109.46952 * 60.00313 * 26 25 24 46 46 H 1.08000 * 120.02863 * 179.97438 * 27 24 23 47 47 H 1.07992 * 119.97565 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4445 -0.1257 6 6 3.9589 0.8823 -1.4672 7 8 3.1044 0.5157 -2.2459 8 7 5.2611 0.7859 -1.8012 9 6 5.6442 0.2400 -3.1056 10 6 7.1462 0.2405 -3.2289 11 8 7.8293 0.6566 -2.3171 12 7 7.7302 -0.2203 -4.3528 13 6 9.0967 -0.2192 -4.4651 14 1 9.7050 0.1504 -3.6529 15 6 9.6988 -0.6947 -5.6235 16 7 8.9586 -1.1450 -6.6115 17 14 11.5606 -0.6940 -5.7763 18 1 12.0997 -1.9798 -5.2651 19 1 11.9401 -0.5303 -7.2026 20 1 12.1219 0.4285 -4.9827 21 6 1.6413 2.1163 1.2878 22 6 2.0728 1.6037 2.4972 23 6 1.7134 2.2227 3.6787 24 6 0.9093 3.3530 3.6516 25 8 0.5502 3.9608 4.8128 26 6 1.0361 3.3817 6.0255 27 6 0.4730 3.8620 2.4370 28 6 0.8395 3.2424 1.2580 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.9355 2.4656 -0.0366 35 1 3.9954 0.8312 0.6659 36 1 5.9445 1.0787 -1.1784 37 1 5.2731 -0.7811 -3.1954 38 1 5.2141 0.8538 -3.8970 39 1 7.1839 -0.5526 -5.0821 40 1 9.3791 -1.4773 -7.4201 41 1 2.6953 0.7214 2.5180 42 1 2.0543 1.8245 4.6230 43 1 0.6771 3.9628 6.8749 44 1 0.6762 2.3562 6.1081 45 1 2.1261 3.3847 6.0183 46 1 -0.1533 4.7415 2.4133 47 1 0.5005 3.6384 0.3122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344182780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:36 Heat of formation + Delta-G solvation = -105.588686 kcal Electronic energy + Delta-G solvation = -27595.821836 eV Core-core repulsion = 23550.215344 eV Total energy + Delta-G solvation = -4045.606492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.60100 -39.74797 -38.47069 -37.91226 -35.27599 -34.39764 -33.65727 -31.41952 -31.34057 -30.90401 -29.83433 -27.90224 -27.21319 -24.91504 -23.90622 -23.24246 -22.24865 -20.54641 -19.85551 -19.46009 -18.46856 -18.11273 -17.32396 -16.44799 -16.05848 -15.77459 -15.61353 -15.49660 -15.15985 -14.83620 -14.49764 -14.38435 -14.13571 -14.12778 -13.91009 -13.66242 -13.44326 -13.18884 -12.87880 -12.79341 -12.30548 -12.19944 -12.07929 -11.85705 -11.64623 -11.51925 -11.47858 -11.28371 -11.13908 -10.90639 -10.69213 -10.61091 -10.47232 -10.33180 -9.65159 -9.57742 -9.23461 -8.77377 -8.64886 -8.30814 -8.11682 -6.52904 -3.95034 1.10821 1.17978 2.83711 2.96411 3.10625 3.20825 3.25291 3.36808 3.55300 3.72664 4.10238 4.46358 4.57831 4.60821 4.67955 4.77511 4.82746 4.87069 4.95385 5.08002 5.12022 5.15537 5.16089 5.19438 5.26241 5.37893 5.40834 5.48747 5.66341 5.73661 5.86668 5.90504 5.91402 5.96015 6.01819 6.05910 6.06985 6.11044 6.23015 6.38646 6.49591 6.53967 6.71206 7.10172 7.44590 7.81722 7.90687 8.42534 8.47524 9.03147 9.37801 9.85654 10.63905 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.001827 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.882739 B =15318.786981 C =16132.332102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.027 4.027 4 H 0.087 0.913 5 C -0.134 4.134 6 C 0.511 3.489 7 O -0.546 6.546 8 N -0.709 5.709 9 C 0.109 3.891 10 C 0.427 3.573 11 O -0.598 6.598 12 N -0.549 5.549 13 C -0.306 4.306 14 H 0.105 0.895 15 C 0.026 3.974 16 N -0.894 5.894 17 Si 0.933 3.067 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.104 4.104 22 C -0.074 4.074 23 C -0.205 4.205 24 C 0.118 3.882 25 O -0.321 6.321 26 C 0.028 3.972 27 C -0.150 4.150 28 C -0.075 4.075 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.411 0.589 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.396 0.604 40 H 0.274 0.726 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.128 0.872 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.636 6.062 19.269 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.046 4.046 4 H 0.105 0.895 5 C -0.174 4.174 6 C 0.297 3.703 7 O -0.425 6.425 8 N -0.363 5.363 9 C -0.019 4.019 10 C 0.213 3.787 11 O -0.485 6.485 12 N -0.184 5.184 13 C -0.435 4.435 14 H 0.123 0.877 15 C -0.177 4.177 16 N -0.534 5.534 17 Si 0.760 3.240 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.105 4.105 22 C -0.092 4.092 23 C -0.224 4.224 24 C 0.073 3.927 25 O -0.234 6.234 26 C -0.067 4.067 27 C -0.169 4.169 28 C -0.093 4.093 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.248 0.752 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.117 0.883 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.146 0.854 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.817 6.158 19.132 26.859 hybrid contribution 1.161 -0.319 -0.141 1.212 sum -16.656 5.839 18.992 25.927 Atomic orbital electron populations 1.21713 0.95968 1.01172 1.01516 1.21733 0.96053 0.95198 1.02960 1.19897 0.93240 0.97004 0.94445 0.89457 1.21737 0.97166 1.03108 0.95356 1.20578 0.82177 0.78580 0.88964 1.90657 1.49650 1.49612 1.52565 1.45773 1.07690 1.63981 1.18820 1.20942 0.94862 1.00131 0.85972 1.19772 0.88564 0.85520 0.84838 1.90494 1.64442 1.53272 1.40260 1.41804 1.07893 1.53865 1.14820 1.19730 0.81441 1.39913 1.02421 0.87682 1.25327 1.00870 0.96445 0.95073 1.69614 1.36382 1.41198 1.06242 0.85810 0.81804 0.78904 0.77496 1.20269 1.20785 1.19324 1.19791 0.99446 0.96431 0.94806 1.20810 0.98279 0.98905 0.91216 1.21213 1.03633 0.98062 0.99483 1.19037 0.95145 0.92377 0.86133 1.86056 1.71063 1.53351 1.12968 1.23042 0.99602 0.99289 0.84803 1.20407 1.04363 1.02398 0.89683 1.20917 0.96426 0.94510 0.97484 0.93165 0.93120 0.92736 0.92652 0.89441 0.88682 0.88852 0.75164 0.89921 0.89912 0.77036 0.91581 0.85728 0.85632 0.88342 0.92688 0.92615 0.85369 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.73 37.16 0.36 -1.09 16 2 C -0.12 -1.31 5.08 -26.73 -0.14 -1.45 16 3 C -0.03 -0.28 1.68 -91.77 -0.15 -0.43 16 4 H 0.09 0.98 7.69 -51.93 -0.40 0.58 16 5 C -0.13 -1.43 4.92 -27.88 -0.14 -1.56 16 6 C 0.51 7.41 7.51 -10.98 -0.08 7.33 16 7 O -0.55 -9.35 13.99 5.56 0.08 -9.27 16 8 N -0.71 -11.30 5.53 -61.46 -0.34 -11.64 16 9 C 0.11 1.96 6.15 -5.19 -0.03 1.93 16 10 C 0.43 9.70 7.85 -10.98 -0.09 9.61 16 11 O -0.60 -15.16 15.24 5.55 0.08 -15.07 16 12 N -0.55 -13.53 5.29 -10.96 -0.06 -13.59 16 13 C -0.31 -8.27 9.68 -14.93 -0.14 -8.41 16 14 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 15 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 16 N -0.89 -23.76 13.05 55.50 0.72 -23.03 16 17 Si 0.93 20.44 29.55 -169.99 -5.02 15.41 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 C -0.10 -0.99 3.76 -104.60 -0.39 -1.38 16 22 C -0.07 -0.66 8.70 -39.61 -0.34 -1.01 16 23 C -0.21 -1.79 9.04 -39.43 -0.36 -2.15 16 24 C 0.12 1.14 6.69 -39.22 -0.26 0.88 16 25 O -0.32 -2.96 10.50 -19.41 -0.20 -3.16 16 26 C 0.03 0.15 9.81 101.05 0.99 1.14 16 27 C -0.15 -1.40 9.99 -39.43 -0.39 -1.80 16 28 C -0.08 -0.69 9.66 -39.60 -0.38 -1.07 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.48 7.38 -51.93 -0.38 0.10 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.54 7.20 -51.93 -0.37 0.17 16 33 H 0.09 1.15 5.88 -51.93 -0.31 0.85 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.86 7.58 -51.93 -0.39 0.47 16 36 H 0.41 6.45 7.44 -40.82 -0.30 6.15 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.12 0.97 7.12 -52.49 -0.37 0.59 16 42 H 0.13 0.85 6.30 -52.48 -0.33 0.52 16 43 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 45 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 46 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.13 1.00 7.94 -52.49 -0.42 0.58 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -31.54 390.34 -7.37 -38.91 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -6.87 Total: 14.44 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.65 Total: 1.12 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.33 Total: -48.26 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.04 Total: -27.50 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.54 -7.37 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344182780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.678 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds