Wall clock time and date at job start Tue Mar 31 2020 17:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08994 * 109.47465 * 305.00017 * 3 2 1 5 5 C 1.53003 * 109.47015 * 184.99741 * 3 2 1 6 6 C 1.50706 * 109.46765 * 65.00203 * 5 3 2 7 7 O 1.21281 * 119.99986 * 359.97438 * 6 5 3 8 8 N 1.34777 * 119.99592 * 180.02562 * 6 5 3 9 9 C 1.46502 * 119.99510 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.47048 * 180.02562 * 9 8 6 11 11 O 1.21288 * 119.99574 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99788 * 180.02562 * 10 9 8 13 13 C 1.37105 * 119.99341 * 179.97438 * 12 10 9 14 14 H 1.07993 * 120.00401 * 0.02562 * 13 12 10 15 15 C 1.38946 * 119.99497 * 179.97438 * 13 12 10 16 16 N 1.31408 * 120.00230 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99918 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47082 * 90.00105 * 17 15 13 19 19 H 1.48496 * 109.47220 * 210.00117 * 17 15 13 20 20 H 1.48492 * 109.46888 * 330.00137 * 17 15 13 21 21 C 1.50704 * 109.47295 * 65.00435 * 3 2 1 22 22 C 1.38264 * 119.94445 * 59.71981 * 21 3 2 23 23 C 1.38143 * 120.05448 * 179.73084 * 22 21 3 24 24 C 1.38737 * 119.94125 * 0.54746 * 23 22 21 25 25 O 1.35896 * 120.05251 * 179.75275 * 24 23 22 26 26 C 1.42900 * 117.00480 * 359.97150 * 25 24 23 27 27 C 1.38731 * 119.89094 * 359.72411 * 24 23 22 28 28 C 1.38147 * 119.94396 * 0.02562 * 27 24 23 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 32 32 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 33 33 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 34 34 H 1.08997 * 109.47571 * 184.99825 * 5 3 2 35 35 H 1.09000 * 109.47046 * 305.00930 * 5 3 2 36 36 H 0.96991 * 120.00379 * 359.97438 * 8 6 5 37 37 H 1.09004 * 109.47483 * 299.99376 * 9 8 6 38 38 H 1.09001 * 109.47518 * 59.99984 * 9 8 6 39 39 H 0.96998 * 120.00317 * 359.97438 * 12 10 9 40 40 H 0.97004 * 119.99845 * 180.02562 * 16 15 13 41 41 H 1.07997 * 119.97320 * 0.02562 * 22 21 3 42 42 H 1.08003 * 120.03173 * 180.27301 * 23 22 21 43 43 H 1.08998 * 109.47060 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.47230 * 300.00912 * 26 25 24 45 45 H 1.09007 * 109.46952 * 60.00313 * 26 25 24 46 46 H 1.08000 * 120.02863 * 179.97438 * 27 24 23 47 47 H 1.07992 * 119.97565 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4445 -0.1257 6 6 3.9589 0.8823 -1.4672 7 8 3.1044 0.5157 -2.2459 8 7 5.2611 0.7859 -1.8012 9 6 5.6442 0.2400 -3.1056 10 6 7.1462 0.2405 -3.2289 11 8 7.8293 0.6566 -2.3171 12 7 7.7302 -0.2203 -4.3528 13 6 9.0967 -0.2192 -4.4651 14 1 9.7050 0.1504 -3.6529 15 6 9.6988 -0.6947 -5.6235 16 7 8.9586 -1.1450 -6.6115 17 14 11.5606 -0.6940 -5.7763 18 1 12.0997 -1.9798 -5.2651 19 1 11.9401 -0.5303 -7.2026 20 1 12.1219 0.4285 -4.9827 21 6 1.6413 2.1163 1.2878 22 6 2.0728 1.6037 2.4972 23 6 1.7134 2.2227 3.6787 24 6 0.9093 3.3530 3.6516 25 8 0.5502 3.9608 4.8128 26 6 1.0361 3.3817 6.0255 27 6 0.4730 3.8620 2.4370 28 6 0.8395 3.2424 1.2580 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.9355 2.4656 -0.0366 35 1 3.9954 0.8312 0.6659 36 1 5.9445 1.0787 -1.1784 37 1 5.2731 -0.7811 -3.1954 38 1 5.2141 0.8538 -3.8970 39 1 7.1839 -0.5526 -5.0821 40 1 9.3791 -1.4773 -7.4201 41 1 2.6953 0.7214 2.5180 42 1 2.0543 1.8245 4.6230 43 1 0.6771 3.9628 6.8749 44 1 0.6762 2.3562 6.1081 45 1 2.1261 3.3847 6.0183 46 1 -0.1533 4.7415 2.4133 47 1 0.5005 3.6384 0.3122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344182780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:35 Heat of formation + Delta-G solvation = -125.860250 kcal Electronic energy + Delta-G solvation = -27596.700877 eV Core-core repulsion = 23550.215344 eV Total energy + Delta-G solvation = -4046.485533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.39664 -40.86142 -40.00231 -38.86668 -36.33341 -35.97010 -35.17591 -33.37858 -32.00919 -31.78375 -30.65424 -29.08077 -27.99539 -26.52833 -25.03719 -23.94968 -22.94649 -21.62531 -21.36138 -20.67758 -20.03539 -19.09034 -18.53243 -17.42716 -17.08912 -17.00831 -16.78577 -16.60145 -16.36309 -16.03887 -15.74850 -15.66821 -15.48378 -15.09972 -14.81466 -14.50782 -14.40308 -14.18447 -13.98323 -13.87071 -13.54639 -13.41522 -13.35133 -12.90831 -12.82549 -12.77612 -12.45875 -12.30537 -12.15003 -12.12797 -11.95807 -11.67485 -11.57070 -11.53726 -11.37215 -10.75559 -10.55271 -10.14242 -10.05249 -9.89810 -8.99070 -8.51113 -6.01393 0.44604 0.48573 1.36381 1.42830 1.55372 1.67422 1.91760 2.09313 2.33511 2.43181 2.83791 3.14649 3.16102 3.67256 3.75765 3.97850 4.04561 4.10070 4.15381 4.28489 4.34883 4.40077 4.41233 4.44494 4.47168 4.48771 4.57060 4.58705 4.67145 4.74689 4.78323 4.85588 5.00124 5.09800 5.16916 5.23114 5.32917 5.33712 5.38723 5.42736 5.45706 5.57318 5.79079 5.87749 5.92126 6.46858 6.49574 6.59723 7.03554 7.25067 7.44998 7.94732 8.65679 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.001827 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.882739 B =15318.786981 C =16132.332102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C -0.020 4.020 4 H 0.075 0.925 5 C -0.126 4.126 6 C 0.512 3.488 7 O -0.572 6.572 8 N -0.711 5.711 9 C 0.122 3.878 10 C 0.432 3.568 11 O -0.624 6.624 12 N -0.560 5.560 13 C -0.338 4.338 14 H 0.086 0.914 15 C -0.011 4.011 16 N -0.916 5.916 17 Si 0.997 3.003 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.270 1.270 21 C -0.110 4.110 22 C -0.077 4.077 23 C -0.208 4.208 24 C 0.107 3.893 25 O -0.339 6.339 26 C 0.019 3.981 27 C -0.162 4.162 28 C -0.080 4.080 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.413 0.587 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.398 0.602 40 H 0.280 0.720 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.116 0.884 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.134 0.866 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.660 6.109 20.566 27.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.158 4.158 3 C -0.039 4.039 4 H 0.093 0.907 5 C -0.166 4.166 6 C 0.301 3.699 7 O -0.452 6.452 8 N -0.366 5.366 9 C -0.006 4.006 10 C 0.219 3.781 11 O -0.512 6.512 12 N -0.196 5.196 13 C -0.467 4.467 14 H 0.104 0.896 15 C -0.212 4.212 16 N -0.556 5.556 17 Si 0.820 3.180 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.195 1.195 21 C -0.110 4.110 22 C -0.095 4.095 23 C -0.226 4.226 24 C 0.062 3.938 25 O -0.253 6.253 26 C -0.075 4.075 27 C -0.181 4.181 28 C -0.098 4.098 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.251 0.749 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.156 0.844 42 H 0.162 0.838 43 H 0.134 0.866 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.152 0.848 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.866 6.205 20.442 27.849 hybrid contribution 1.088 -0.311 -0.462 1.222 sum -16.778 5.894 19.980 26.748 Atomic orbital electron populations 1.21668 0.95450 1.01422 1.01408 1.21683 0.96532 0.95344 1.02207 1.19779 0.92793 0.96658 0.94626 0.90674 1.21782 0.97543 1.03979 0.93266 1.21226 0.81090 0.77645 0.89970 1.90656 1.50137 1.50659 1.53749 1.45824 1.08441 1.64316 1.17987 1.20741 0.91116 1.01139 0.87644 1.20488 0.90393 0.83552 0.83638 1.90469 1.65857 1.53922 1.40993 1.41862 1.07400 1.54719 1.15603 1.19738 0.82580 1.41665 1.02720 0.89574 1.26127 1.05163 0.95521 0.94344 1.69680 1.38032 1.41286 1.06588 0.84867 0.76437 0.78890 0.77790 1.19552 1.19680 1.19468 1.19692 1.00108 0.96706 0.94475 1.20990 0.98252 0.99253 0.91003 1.21427 1.03216 0.97700 1.00281 1.19248 0.95326 0.92745 0.86463 1.86034 1.71472 1.54053 1.13756 1.23303 1.00192 1.00094 0.83920 1.20584 1.04743 1.02848 0.89910 1.21051 0.96338 0.94491 0.97900 0.92754 0.92649 0.93363 0.91464 0.91975 0.87212 0.86779 0.74896 0.88967 0.89053 0.76739 0.91090 0.84413 0.83804 0.86568 0.91809 0.91904 0.84767 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.73 71.98 0.70 -1.98 16 2 C -0.12 -2.45 5.08 30.60 0.16 -2.30 16 3 C -0.02 -0.38 1.68 -11.54 -0.02 -0.40 16 4 H 0.07 1.64 7.69 -2.39 -0.02 1.62 16 5 C -0.13 -2.46 4.92 29.85 0.15 -2.31 16 6 C 0.51 14.31 7.51 87.66 0.66 14.97 16 7 O -0.57 -19.26 13.99 -3.03 -0.04 -19.31 16 8 N -0.71 -22.00 5.53 -466.76 -2.58 -24.58 16 9 C 0.12 4.33 6.15 85.63 0.53 4.85 16 10 C 0.43 19.69 7.85 87.66 0.69 20.38 16 11 O -0.62 -31.84 15.24 -3.06 -0.05 -31.89 16 12 N -0.56 -27.97 5.29 -306.98 -1.62 -29.59 16 13 C -0.34 -18.52 9.68 84.04 0.81 -17.71 16 14 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 15 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 16 N -0.92 -48.47 13.05 21.66 0.28 -48.19 16 17 Si 1.00 41.56 29.55 68.60 2.03 43.58 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 21 C -0.11 -1.89 3.76 -19.85 -0.07 -1.97 16 22 C -0.08 -1.21 8.70 22.25 0.19 -1.02 16 23 C -0.21 -3.21 9.04 22.37 0.20 -3.00 16 24 C 0.11 1.92 6.69 22.51 0.15 2.07 16 25 O -0.34 -5.82 10.50 -92.38 -0.97 -6.79 16 26 C 0.02 0.17 9.81 113.37 1.11 1.29 16 27 C -0.16 -2.88 9.99 22.37 0.22 -2.66 16 28 C -0.08 -1.37 9.66 22.26 0.22 -1.16 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.99 7.38 -2.39 -0.02 0.97 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.19 7.20 -2.39 -0.02 1.17 16 33 H 0.06 1.61 5.88 -2.39 -0.01 1.60 16 34 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.11 1.79 7.58 -2.39 -0.02 1.78 16 36 H 0.41 12.57 7.44 -92.71 -0.69 11.88 16 37 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 40 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 41 H 0.14 1.74 7.12 -2.91 -0.02 1.72 16 42 H 0.14 1.59 6.30 -2.91 -0.02 1.57 16 43 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 45 H 0.06 0.48 7.66 -2.38 -0.02 0.46 16 46 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 47 H 0.14 2.02 7.94 -2.91 -0.02 1.99 16 Total: -1.00 -67.20 390.34 2.79 -64.41 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: -0.42 Total: 43.40 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 6.16 Total: 8.96 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -3.92 Total: -102.37 kcal Atomic # 8 Polarization: -56.92 SS G_CDS: -1.06 Total: -57.98 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -67.20 2.79 -64.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344182780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.454 kcal (2) G-P(sol) polarization free energy of solvation -67.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds