Wall clock time and date at job start Tue Mar 31 2020 17:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52995 * 109.47519 * 2 1 4 4 H 1.09008 * 109.13014 * 305.51784 * 3 2 1 5 5 C 1.52902 * 109.31156 * 186.05200 * 3 2 1 6 6 C 1.53355 * 108.68870 * 188.95443 * 5 3 2 7 7 H 1.08998 * 109.70064 * 187.27239 * 6 5 3 8 8 C 1.50705 * 109.66939 * 307.78240 * 6 5 3 9 9 O 1.21279 * 120.00256 * 88.72911 * 8 6 5 10 10 N 1.34770 * 119.99830 * 268.72728 * 8 6 5 11 11 C 1.46499 * 120.00278 * 4.96399 * 10 8 6 12 12 C 1.50707 * 109.46947 * 269.99857 * 11 10 8 13 13 H 1.08002 * 120.00286 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00177 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99608 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00314 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47385 * 89.99743 * 16 14 12 18 18 H 1.48499 * 109.47289 * 209.99865 * 16 14 12 19 19 H 1.48503 * 109.46887 * 329.99826 * 16 14 12 20 20 C 1.46503 * 120.00216 * 184.96324 * 10 8 6 21 21 C 1.50700 * 109.47108 * 265.20589 * 20 10 8 22 22 C 1.34511 * 125.79381 * 90.26058 * 21 20 10 23 23 C 1.41387 * 106.84371 * 180.02562 * 22 21 20 24 24 C 1.34509 * 106.83867 * 0.02562 * 23 22 21 25 25 O 1.34307 * 108.42287 * 359.73647 * 24 23 22 26 26 C 1.53063 * 108.42436 * 67.51638 * 6 5 3 27 27 C 1.50184 * 109.89139 * 311.09935 * 26 6 5 28 28 O 1.21280 * 118.24354 * 197.61073 * 27 26 6 29 29 N 1.33349 * 123.50852 * 17.58484 * 27 26 6 30 30 H 1.09002 * 109.47089 * 59.99990 * 1 2 3 31 31 H 1.08995 * 109.47710 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47570 * 300.00503 * 1 2 3 33 33 H 1.08998 * 109.47612 * 239.99850 * 2 1 3 34 34 H 1.09002 * 109.47089 * 120.00010 * 2 1 3 35 35 H 1.08998 * 109.60933 * 69.18712 * 5 3 2 36 36 H 1.08999 * 109.58954 * 308.70117 * 5 3 2 37 37 H 1.08997 * 109.47399 * 29.99752 * 11 10 8 38 38 H 1.08995 * 109.47436 * 150.00156 * 11 10 8 39 39 H 0.97004 * 119.99446 * 179.97438 * 15 14 12 40 40 H 1.08995 * 109.47737 * 145.20474 * 20 10 8 41 41 H 1.08999 * 109.46669 * 25.19807 * 20 10 8 42 42 H 1.08000 * 126.58096 * 0.04095 * 22 21 20 43 43 H 1.07997 * 126.57928 * 180.02562 * 23 22 21 44 44 H 1.07997 * 125.79057 * 179.97438 * 24 23 22 45 45 H 1.08995 * 109.40546 * 71.23171 * 26 6 5 46 46 H 1.09007 * 109.39781 * 190.97741 * 26 6 5 47 47 H 0.96993 * 117.94880 * 177.77161 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5950 1.9787 -0.8383 5 6 3.5614 1.4407 -0.1521 6 6 4.0794 2.8663 0.0739 7 1 5.1438 2.9114 -0.1566 8 6 3.3275 3.8257 -0.8124 9 8 2.2982 4.3336 -0.4206 10 7 3.7989 4.1193 -2.0403 11 6 4.9813 3.4251 -2.5564 12 6 6.2210 4.1915 -2.1730 13 1 6.1366 5.1045 -1.6023 14 6 7.4631 3.7270 -2.5506 15 7 7.5659 2.6148 -3.2451 16 14 8.9997 4.6764 -2.0748 17 1 9.4933 4.1927 -0.7604 18 1 10.0491 4.4681 -3.1047 19 1 8.6784 6.1232 -1.9810 20 6 3.1290 5.1327 -2.8592 21 6 2.1473 4.4618 -3.7850 22 6 0.8538 4.2123 -3.5132 23 6 0.3115 3.5741 -4.6523 24 6 1.3062 3.4713 -5.5519 25 8 2.4144 4.0155 -5.0233 26 6 3.8537 3.2360 1.5419 27 6 2.4420 2.9123 1.9392 28 8 1.9962 3.4260 2.9433 29 7 1.6525 2.0906 1.2467 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.8283 1.1095 -1.1557 36 1 4.0018 0.7705 0.5861 37 1 5.0281 2.4224 -2.1317 38 1 4.9176 3.3571 -3.6424 39 1 8.4397 2.2883 -3.5111 40 1 3.8708 5.6738 -3.4466 41 1 2.5987 5.8307 -2.2114 42 1 0.3299 4.4535 -2.6001 43 1 -0.7061 3.2344 -4.7763 44 1 1.2262 3.0297 -6.5342 45 1 4.5446 2.6713 2.1679 46 1 4.0327 4.3026 1.6783 47 1 0.7647 1.9126 1.5947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348737035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:29 Heat of formation + Delta-G solvation = -67.934079 kcal Electronic energy + Delta-G solvation = -30830.352845 eV Core-core repulsion = 26786.379179 eV Total energy + Delta-G solvation = -4043.973666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.23422 -40.69065 -38.68241 -36.69422 -35.25326 -33.74572 -32.84826 -32.55504 -31.85492 -30.33638 -28.89192 -27.36153 -26.17778 -24.57736 -23.34584 -22.45844 -21.55381 -21.38595 -20.46834 -19.70995 -17.97076 -17.20407 -16.99230 -16.60901 -16.22655 -15.99758 -15.78671 -15.09361 -15.04827 -14.77605 -14.39842 -14.29161 -13.86980 -13.61151 -13.37248 -13.29421 -13.05688 -12.52593 -12.49821 -12.46850 -12.38633 -12.19108 -11.78663 -11.64900 -11.59505 -11.35305 -11.24087 -11.08609 -11.02200 -10.82060 -10.81015 -10.60374 -10.26834 -9.88115 -9.64323 -9.36372 -9.14607 -8.73854 -8.65434 -8.22926 -7.93014 -6.27360 -4.35711 1.98078 2.85419 3.04695 3.12750 3.17677 3.26020 3.28771 3.42213 3.61191 3.88701 4.26066 4.65080 4.75079 4.84455 4.99066 5.03005 5.06482 5.10880 5.18748 5.27595 5.29599 5.34071 5.49542 5.55204 5.66682 5.72481 5.81236 5.86101 5.88515 5.98473 6.04972 6.05936 6.10455 6.18214 6.23697 6.29552 6.30212 6.37973 6.58983 6.78503 7.07914 7.09898 7.35481 7.47293 7.66755 7.70222 7.94041 8.15617 8.60028 8.67542 8.84177 9.33050 10.79213 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008235 B = 0.005664 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3399.371067 B = 4942.187833 C = 6954.092209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.135 4.135 3 C 0.140 3.860 4 H 0.076 0.924 5 C -0.118 4.118 6 C -0.116 4.116 7 H 0.130 0.870 8 C 0.523 3.477 9 O -0.558 6.558 10 N -0.589 5.589 11 C 0.236 3.764 12 C -0.543 4.543 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.888 5.888 16 Si 0.896 3.104 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.195 3.805 21 C -0.014 4.014 22 C -0.200 4.200 23 C -0.220 4.220 24 C -0.047 4.047 25 O -0.168 6.168 26 C -0.116 4.116 27 C 0.541 3.459 28 O -0.574 6.574 29 N -0.704 5.704 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.266 0.734 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.197 0.803 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.999 -4.968 -0.223 11.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.173 4.173 3 C 0.035 3.965 4 H 0.094 0.906 5 C -0.156 4.156 6 C -0.137 4.137 7 H 0.148 0.852 8 C 0.312 3.688 9 O -0.438 6.438 10 N -0.319 5.319 11 C 0.116 3.884 12 C -0.582 4.582 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.526 5.526 16 Si 0.723 3.277 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.197 1.197 20 C 0.071 3.929 21 C -0.066 4.066 22 C -0.220 4.220 23 C -0.239 4.239 24 C -0.116 4.116 25 O -0.064 6.064 26 C -0.156 4.156 27 C 0.329 3.671 28 O -0.455 6.455 29 N -0.355 5.355 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.163 0.837 43 H 0.160 0.840 44 H 0.214 0.786 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -10.072 -4.491 0.153 11.029 hybrid contribution 0.435 0.190 -0.046 0.477 sum -9.637 -4.300 0.108 10.553 Atomic orbital electron populations 1.21782 0.95627 1.01730 1.01964 1.21922 0.96364 0.95930 1.03111 1.20996 0.95544 0.92822 0.87145 0.90597 1.21864 0.93717 0.95659 1.04364 1.21511 1.04285 0.94327 0.93578 0.85245 1.20358 0.84547 0.82008 0.81935 1.90644 1.24421 1.54405 1.74318 1.48286 1.29731 1.39261 1.14587 1.19528 0.80528 0.92516 0.95793 1.21480 0.90594 1.09961 1.36131 0.91888 1.24932 0.99142 0.94959 0.94559 1.69922 1.24897 1.20861 1.36881 0.86523 0.82376 0.80425 0.78354 1.20373 1.21084 1.19733 1.19703 0.93173 0.89623 0.90376 1.23195 0.96218 1.02640 0.84518 1.21625 0.94505 1.05457 1.00390 1.21775 1.00452 1.06620 0.95032 1.23959 0.84436 1.02958 1.00228 1.84097 1.36272 1.58926 1.27056 1.21487 0.93788 1.04643 0.95650 1.19876 0.88179 0.76879 0.82124 1.90688 1.75200 1.52058 1.27507 1.45368 1.17908 1.47530 1.24700 0.92361 0.92469 0.92868 0.90358 0.91271 0.88973 0.89997 0.94100 0.94351 0.92421 0.88718 0.87667 0.83674 0.84043 0.78642 0.87915 0.88064 0.77264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.76 37.15 0.36 -1.09 16 2 C -0.14 -1.39 5.57 -26.74 -0.15 -1.54 16 3 C 0.14 1.86 2.30 -68.38 -0.16 1.70 16 4 H 0.08 1.18 7.09 -51.92 -0.37 0.81 16 5 C -0.12 -1.63 4.80 -26.60 -0.13 -1.76 16 6 C -0.12 -1.90 2.21 -91.55 -0.20 -2.10 16 7 H 0.13 2.31 6.23 -51.93 -0.32 1.99 16 8 C 0.52 9.74 5.65 -10.99 -0.06 9.67 16 9 O -0.56 -11.22 13.70 5.56 0.08 -11.15 16 10 N -0.59 -11.30 2.44 -176.43 -0.43 -11.73 16 11 C 0.24 5.14 4.77 -5.19 -0.02 5.11 16 12 C -0.54 -13.02 8.64 -34.44 -0.30 -13.32 16 13 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 14 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -23.07 13.29 55.43 0.74 -22.33 16 16 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 C 0.20 3.45 5.96 -5.19 -0.03 3.42 16 21 C -0.01 -0.24 6.90 -35.63 -0.25 -0.49 16 22 C -0.20 -3.18 10.81 -39.70 -0.43 -3.61 16 23 C -0.22 -3.01 10.91 -39.70 -0.43 -3.44 16 24 C -0.05 -0.65 12.09 29.41 0.36 -0.29 16 25 O -0.17 -2.88 10.65 5.69 0.06 -2.82 16 26 C -0.12 -1.84 5.29 -28.10 -0.15 -1.99 16 27 C 0.54 9.44 6.39 -11.87 -0.08 9.36 16 28 O -0.57 -11.97 17.78 5.56 0.10 -11.87 16 29 N -0.70 -10.37 4.82 -54.86 -0.26 -10.63 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.50 6.67 -51.93 -0.35 0.15 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.31 7.00 -51.93 -0.36 0.95 16 36 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 37 H 0.04 0.90 5.54 -51.93 -0.29 0.61 16 38 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 39 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 40 H 0.09 1.66 8.11 -51.93 -0.42 1.24 16 41 H 0.11 1.80 7.35 -51.93 -0.38 1.42 16 42 H 0.15 2.33 8.06 -52.49 -0.42 1.90 16 43 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.20 1.86 8.06 -52.49 -0.42 1.43 16 45 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.10 1.71 8.10 -51.93 -0.42 1.29 16 47 H 0.39 5.39 7.04 -40.82 -0.29 5.10 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -30.10 381.36 -7.73 -37.82 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.97 Total: 11.25 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -1.76 Total: 1.23 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.04 Total: -44.70 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: 0.24 Total: -25.84 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.10 -7.73 -37.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348737035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.112 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds