Wall clock time and date at job start Tue Mar 31 2020 17:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52995 * 109.47519 * 2 1 4 4 H 1.09008 * 109.13014 * 305.51784 * 3 2 1 5 5 C 1.52902 * 109.31156 * 186.05200 * 3 2 1 6 6 C 1.53355 * 108.68870 * 188.95443 * 5 3 2 7 7 H 1.08998 * 109.70064 * 187.27239 * 6 5 3 8 8 C 1.50705 * 109.66939 * 307.78240 * 6 5 3 9 9 O 1.21279 * 120.00256 * 88.72911 * 8 6 5 10 10 N 1.34770 * 119.99830 * 268.72728 * 8 6 5 11 11 C 1.46499 * 120.00278 * 4.96399 * 10 8 6 12 12 C 1.50707 * 109.46947 * 269.99857 * 11 10 8 13 13 H 1.08002 * 120.00286 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00177 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99608 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00314 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47385 * 89.99743 * 16 14 12 18 18 H 1.48499 * 109.47289 * 209.99865 * 16 14 12 19 19 H 1.48503 * 109.46887 * 329.99826 * 16 14 12 20 20 C 1.46503 * 120.00216 * 184.96324 * 10 8 6 21 21 C 1.50700 * 109.47108 * 265.20589 * 20 10 8 22 22 C 1.34511 * 125.79381 * 90.26058 * 21 20 10 23 23 C 1.41387 * 106.84371 * 180.02562 * 22 21 20 24 24 C 1.34509 * 106.83867 * 0.02562 * 23 22 21 25 25 O 1.34307 * 108.42287 * 359.73647 * 24 23 22 26 26 C 1.53063 * 108.42436 * 67.51638 * 6 5 3 27 27 C 1.50184 * 109.89139 * 311.09935 * 26 6 5 28 28 O 1.21280 * 118.24354 * 197.61073 * 27 26 6 29 29 N 1.33349 * 123.50852 * 17.58484 * 27 26 6 30 30 H 1.09002 * 109.47089 * 59.99990 * 1 2 3 31 31 H 1.08995 * 109.47710 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47570 * 300.00503 * 1 2 3 33 33 H 1.08998 * 109.47612 * 239.99850 * 2 1 3 34 34 H 1.09002 * 109.47089 * 120.00010 * 2 1 3 35 35 H 1.08998 * 109.60933 * 69.18712 * 5 3 2 36 36 H 1.08999 * 109.58954 * 308.70117 * 5 3 2 37 37 H 1.08997 * 109.47399 * 29.99752 * 11 10 8 38 38 H 1.08995 * 109.47436 * 150.00156 * 11 10 8 39 39 H 0.97004 * 119.99446 * 179.97438 * 15 14 12 40 40 H 1.08995 * 109.47737 * 145.20474 * 20 10 8 41 41 H 1.08999 * 109.46669 * 25.19807 * 20 10 8 42 42 H 1.08000 * 126.58096 * 0.04095 * 22 21 20 43 43 H 1.07997 * 126.57928 * 180.02562 * 23 22 21 44 44 H 1.07997 * 125.79057 * 179.97438 * 24 23 22 45 45 H 1.08995 * 109.40546 * 71.23171 * 26 6 5 46 46 H 1.09007 * 109.39781 * 190.97741 * 26 6 5 47 47 H 0.96993 * 117.94880 * 177.77161 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5950 1.9787 -0.8383 5 6 3.5614 1.4407 -0.1521 6 6 4.0794 2.8663 0.0739 7 1 5.1438 2.9114 -0.1566 8 6 3.3275 3.8257 -0.8124 9 8 2.2982 4.3336 -0.4206 10 7 3.7989 4.1193 -2.0403 11 6 4.9813 3.4251 -2.5564 12 6 6.2210 4.1915 -2.1730 13 1 6.1366 5.1045 -1.6023 14 6 7.4631 3.7270 -2.5506 15 7 7.5659 2.6148 -3.2451 16 14 8.9997 4.6764 -2.0748 17 1 9.4933 4.1927 -0.7604 18 1 10.0491 4.4681 -3.1047 19 1 8.6784 6.1232 -1.9810 20 6 3.1290 5.1327 -2.8592 21 6 2.1473 4.4618 -3.7850 22 6 0.8538 4.2123 -3.5132 23 6 0.3115 3.5741 -4.6523 24 6 1.3062 3.4713 -5.5519 25 8 2.4144 4.0155 -5.0233 26 6 3.8537 3.2360 1.5419 27 6 2.4420 2.9123 1.9392 28 8 1.9962 3.4260 2.9433 29 7 1.6525 2.0906 1.2467 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.8283 1.1095 -1.1557 36 1 4.0018 0.7705 0.5861 37 1 5.0281 2.4224 -2.1317 38 1 4.9176 3.3571 -3.6424 39 1 8.4397 2.2883 -3.5111 40 1 3.8708 5.6738 -3.4466 41 1 2.5987 5.8307 -2.2114 42 1 0.3299 4.4535 -2.6001 43 1 -0.7061 3.2344 -4.7763 44 1 1.2262 3.0297 -6.5342 45 1 4.5446 2.6713 2.1679 46 1 4.0327 4.3026 1.6783 47 1 0.7647 1.9126 1.5947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348737035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:28 Heat of formation + Delta-G solvation = -85.739773 kcal Electronic energy + Delta-G solvation = -30831.124958 eV Core-core repulsion = 26786.379179 eV Total energy + Delta-G solvation = -4044.745779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.45710 -42.04587 -40.15527 -37.96043 -36.85657 -35.02295 -34.54619 -33.85590 -32.99848 -31.69920 -30.01375 -29.09305 -27.51162 -25.78655 -24.99538 -23.82902 -22.60345 -22.54082 -21.72597 -21.02133 -19.39148 -18.76331 -18.24951 -18.16363 -17.68516 -17.34320 -17.12466 -16.51528 -16.36396 -16.31511 -15.88208 -15.56868 -14.98006 -14.74991 -14.67776 -14.59624 -14.31691 -14.14109 -13.75301 -13.70892 -13.59783 -13.49773 -13.26360 -13.00068 -12.88284 -12.81046 -12.69241 -12.49453 -12.33078 -12.14684 -12.04900 -11.85206 -11.72005 -11.69501 -10.86691 -10.77605 -10.66375 -10.50847 -10.00620 -9.64311 -9.36692 -8.17910 -6.31797 0.75436 1.44582 1.48188 1.55568 1.62856 1.69002 1.74445 2.17001 2.35583 2.42724 2.49942 3.13351 3.49860 3.58319 3.66514 3.77236 3.80287 3.92327 4.15037 4.17208 4.19402 4.22530 4.38587 4.44800 4.54195 4.58736 4.60801 4.73924 4.80185 4.85777 4.92327 4.93332 4.96741 5.04052 5.05066 5.11235 5.19952 5.24584 5.28147 5.39006 5.62515 5.65100 5.78364 5.89245 6.07014 6.25973 6.41795 6.54507 6.82068 7.26047 7.28404 7.41755 8.87732 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008235 B = 0.005664 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3399.371067 B = 4942.187833 C = 6954.092209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C 0.144 3.856 4 H 0.053 0.947 5 C -0.115 4.115 6 C -0.112 4.112 7 H 0.116 0.884 8 C 0.522 3.478 9 O -0.575 6.575 10 N -0.591 5.591 11 C 0.256 3.744 12 C -0.547 4.547 13 H 0.055 0.945 14 C 0.028 3.972 15 N -0.915 5.915 16 Si 0.951 3.049 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.195 3.805 21 C -0.041 4.041 22 C -0.199 4.199 23 C -0.223 4.223 24 C -0.040 4.040 25 O -0.192 6.192 26 C -0.113 4.113 27 C 0.537 3.463 28 O -0.614 6.614 29 N -0.693 5.693 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.041 0.959 38 H 0.013 0.987 39 H 0.268 0.732 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.139 0.861 43 H 0.172 0.828 44 H 0.238 0.762 45 H 0.132 0.868 46 H 0.087 0.913 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.466 -6.433 -0.464 12.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C 0.039 3.961 4 H 0.071 0.929 5 C -0.153 4.153 6 C -0.133 4.133 7 H 0.134 0.866 8 C 0.311 3.689 9 O -0.456 6.456 10 N -0.321 5.321 11 C 0.135 3.865 12 C -0.585 4.585 13 H 0.074 0.926 14 C -0.173 4.173 15 N -0.554 5.554 16 Si 0.777 3.223 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.199 1.199 20 C 0.071 3.929 21 C -0.092 4.092 22 C -0.219 4.219 23 C -0.241 4.241 24 C -0.107 4.107 25 O -0.088 6.088 26 C -0.153 4.153 27 C 0.326 3.674 28 O -0.498 6.498 29 N -0.343 5.343 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.059 0.941 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.157 0.843 43 H 0.189 0.811 44 H 0.254 0.746 45 H 0.150 0.850 46 H 0.106 0.894 47 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -10.558 -5.967 -0.108 12.128 hybrid contribution 0.493 0.659 -0.055 0.824 sum -10.065 -5.308 -0.163 11.380 Atomic orbital electron populations 1.21780 0.94914 1.02795 1.01527 1.21884 0.96937 0.93482 1.04244 1.21016 0.95126 0.94457 0.85496 0.92886 1.21905 0.94126 0.94237 1.05010 1.21482 1.03085 0.95431 0.93325 0.86557 1.20747 0.84394 0.81981 0.81743 1.90631 1.25257 1.55176 1.74529 1.48245 1.29255 1.39439 1.15145 1.19122 0.80809 0.92490 0.94069 1.21656 0.91551 1.09696 1.35627 0.92629 1.25549 1.01516 0.95637 0.94564 1.70002 1.25484 1.22027 1.37890 0.85663 0.79371 0.79099 0.78207 1.19599 1.21097 1.19897 1.19667 0.93229 0.89486 0.90498 1.22971 0.96497 1.04630 0.85085 1.21724 0.94152 1.05107 1.00924 1.22098 1.01935 1.06204 0.93895 1.24848 0.83178 1.01222 1.01482 1.84077 1.38029 1.59650 1.27083 1.21501 0.93770 1.04339 0.95664 1.20109 0.88785 0.76755 0.81772 1.90666 1.76034 1.53750 1.29343 1.45345 1.17835 1.46537 1.24575 0.93126 0.90651 0.93021 0.89314 0.89973 0.89333 0.87366 0.94112 0.96910 0.92335 0.89362 0.87603 0.84274 0.81062 0.74571 0.84964 0.89425 0.76651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.76 71.98 0.70 -1.85 16 2 C -0.13 -2.32 5.57 30.59 0.17 -2.15 16 3 C 0.14 3.65 2.30 45.10 0.10 3.75 16 4 H 0.05 1.63 7.09 -2.38 -0.02 1.61 16 5 C -0.11 -3.03 4.80 30.68 0.15 -2.88 16 6 C -0.11 -3.64 2.21 -11.40 -0.03 -3.67 16 7 H 0.12 4.14 6.23 -2.39 -0.01 4.13 16 8 C 0.52 19.73 5.65 87.66 0.49 20.22 16 9 O -0.58 -23.57 13.70 -3.03 -0.04 -23.61 16 10 N -0.59 -23.31 2.44 -830.51 -2.03 -25.34 16 11 C 0.26 11.38 4.77 85.64 0.41 11.79 16 12 C -0.55 -26.52 8.64 25.60 0.22 -26.30 16 13 H 0.06 2.74 7.81 -2.91 -0.02 2.72 16 14 C 0.03 1.41 5.46 84.65 0.46 1.87 16 15 N -0.92 -47.62 13.29 21.45 0.28 -47.33 16 16 Si 0.95 39.80 29.54 68.60 2.03 41.83 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 20 C 0.19 7.16 5.96 85.63 0.51 7.67 16 21 C -0.04 -1.42 6.90 24.83 0.17 -1.25 16 22 C -0.20 -6.28 10.81 22.19 0.24 -6.04 16 23 C -0.22 -5.66 10.91 22.19 0.24 -5.42 16 24 C -0.04 -1.01 12.09 66.97 0.81 -0.20 16 25 O -0.19 -6.54 10.65 -2.56 -0.03 -6.57 16 26 C -0.11 -3.53 5.29 29.71 0.16 -3.37 16 27 C 0.54 18.48 6.39 87.72 0.56 19.04 16 28 O -0.61 -25.68 17.78 -3.03 -0.05 -25.73 16 29 N -0.69 -19.80 4.82 -446.66 -2.15 -21.95 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.87 6.67 -2.38 -0.02 0.86 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 2.44 7.00 -2.39 -0.02 2.42 16 36 H 0.11 2.31 8.11 -2.39 -0.02 2.29 16 37 H 0.04 1.82 5.54 -2.39 -0.01 1.80 16 38 H 0.01 0.64 8.07 -2.39 -0.02 0.62 16 39 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 40 H 0.09 3.26 8.11 -2.39 -0.02 3.25 16 41 H 0.11 3.79 7.35 -2.39 -0.02 3.77 16 42 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 43 H 0.17 3.24 8.06 -2.91 -0.02 3.21 16 44 H 0.24 3.66 8.06 -2.91 -0.02 3.63 16 45 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 46 H 0.09 2.99 8.10 -2.38 -0.02 2.97 16 47 H 0.40 10.56 7.04 -92.71 -0.65 9.91 16 Total: -1.00 -65.29 381.36 3.72 -61.58 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: 0.34 Total: 35.90 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.38 Total: 11.22 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -3.90 Total: -94.62 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -0.12 Total: -55.91 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -65.29 3.72 -61.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348737035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.165 kcal (2) G-P(sol) polarization free energy of solvation -65.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds