Wall clock time and date at job start Tue Mar 31 2020 18:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46773 * 2 1 4 4 N 1.46499 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99991 * 266.75473 * 4 3 2 6 6 H 1.08003 * 119.99898 * 325.86087 * 5 4 3 7 7 C 1.38810 * 120.00279 * 145.85611 * 5 4 3 8 8 N 1.31615 * 120.00621 * 155.67566 * 7 5 4 9 9 Si 1.86808 * 119.99817 * 335.67871 * 7 5 4 10 10 H 1.48496 * 109.47000 * 95.70471 * 9 7 5 11 11 H 1.48504 * 109.47019 * 215.70708 * 9 7 5 12 12 H 1.48504 * 109.47027 * 335.70460 * 9 7 5 13 13 C 1.46504 * 120.00187 * 86.75515 * 4 3 2 14 14 C 1.50693 * 109.47135 * 90.00197 * 13 4 3 15 15 O 1.21284 * 120.00084 * 359.97438 * 14 13 4 16 16 N 1.34775 * 120.00291 * 180.02562 * 14 13 4 17 17 C 1.39249 * 120.00588 * 184.76441 * 16 14 13 18 18 C 1.38854 * 120.16760 * 26.73152 * 17 16 14 19 19 C 1.38022 * 120.07497 * 180.02562 * 18 17 16 20 20 C 1.38579 * 120.41271 * 0.02562 * 19 18 17 21 21 C 1.37771 * 120.34596 * 359.97438 * 20 19 18 22 22 C 1.39752 * 119.91310 * 359.97438 * 21 20 19 23 23 C 1.47385 * 120.20440 * 180.02562 * 22 21 20 24 24 O 1.21507 * 119.99626 * 185.73025 * 23 22 21 25 25 O 1.34756 * 119.99729 * 5.73374 * 23 22 21 26 26 C 1.45204 * 116.99581 * 179.97438 * 25 23 22 27 27 C 1.52997 * 109.47094 * 179.97438 * 26 25 23 28 28 H 1.09003 * 109.46681 * 59.99736 * 1 2 3 29 29 H 1.09003 * 109.46452 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47146 * 299.99769 * 1 2 3 31 31 H 1.08998 * 109.47146 * 240.00231 * 2 1 3 32 32 H 1.08994 * 109.46868 * 120.00074 * 2 1 3 33 33 H 1.09008 * 109.47204 * 60.00197 * 3 2 1 34 34 H 1.09000 * 109.48064 * 300.00034 * 3 2 1 35 35 H 0.96995 * 120.00572 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.46855 * 329.99749 * 13 4 3 37 37 H 1.09001 * 109.46798 * 210.00085 * 13 4 3 38 38 H 0.97002 * 119.99741 * 4.76149 * 16 14 13 39 39 H 1.07994 * 119.96092 * 0.30869 * 18 17 16 40 40 H 1.07997 * 119.78953 * 179.97438 * 19 18 17 41 41 H 1.08008 * 119.82307 * 179.97438 * 20 19 18 42 42 H 1.07998 * 120.04700 * 180.02562 * 21 20 19 43 43 H 1.09000 * 109.46891 * 299.99855 * 26 25 23 44 44 H 1.09004 * 109.47217 * 59.99822 * 26 25 23 45 45 H 1.09004 * 109.46853 * 60.00066 * 27 26 25 46 46 H 1.08991 * 109.47493 * 179.97438 * 27 26 25 47 47 H 1.08999 * 109.47265 * 300.00680 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.5096 1.1831 6 1 3.7900 2.0819 2.0070 7 6 5.3989 0.8419 1.3242 8 7 6.2780 1.2529 2.2133 9 14 5.7779 -0.6402 0.2521 10 1 6.5758 -0.2093 -0.9239 11 1 6.5518 -1.6347 1.0379 12 1 4.5074 -1.2548 -0.2100 13 6 4.2370 1.3710 -1.2676 14 6 4.4879 2.7649 -1.7822 15 8 4.0937 3.7238 -1.1529 16 7 5.1495 2.9461 -2.9424 17 6 5.4686 4.2328 -3.3684 18 6 5.6329 5.2540 -2.4420 19 6 5.9486 6.5288 -2.8665 20 6 6.1035 6.8005 -4.2165 21 6 5.9444 5.8002 -5.1505 22 6 5.6257 4.5041 -4.7362 23 6 5.4546 3.4291 -5.7298 24 8 5.0763 2.3298 -5.3764 25 8 5.7179 3.6654 -7.0301 26 6 5.5278 2.5601 -7.9525 27 6 5.8729 3.0153 -9.3719 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6767 1.9565 -0.8899 35 1 7.1228 0.7865 2.3116 36 1 3.6477 0.8150 -1.9968 37 1 5.1895 0.8654 -1.1088 38 1 5.4035 2.1801 -3.4805 39 1 5.5180 5.0495 -1.3878 40 1 6.0749 7.3197 -2.1420 41 1 6.3501 7.8016 -4.5382 42 1 6.0666 6.0172 -6.2014 43 1 6.1783 1.7332 -7.6675 44 1 4.4885 2.2332 -7.9187 45 1 6.9121 3.3424 -9.4059 46 1 5.7307 2.1856 -10.0642 47 1 5.2223 3.8422 -9.6565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350648785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:51 Heat of formation + Delta-G solvation = -63.245596 kcal Electronic energy + Delta-G solvation = -29315.460296 eV Core-core repulsion = 25271.689938 eV Total energy + Delta-G solvation = -4043.770358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.96872 -39.74147 -38.16874 -36.74976 -36.10216 -34.23622 -32.92800 -32.27278 -31.33416 -31.00940 -29.85029 -27.29510 -25.77875 -24.77203 -23.27399 -22.81859 -22.06883 -21.14808 -20.45981 -19.69344 -18.06875 -17.67505 -17.00537 -16.72047 -16.71086 -16.41073 -15.53560 -14.95307 -14.88111 -14.48344 -14.36732 -14.10850 -13.99028 -13.95254 -13.36525 -13.29733 -13.04790 -12.83062 -12.72422 -12.49819 -12.40261 -12.18936 -12.12032 -11.83708 -11.73069 -11.46501 -11.24910 -10.84768 -10.77103 -10.76364 -10.61961 -10.57949 -10.21823 -10.12673 -9.88260 -9.60240 -9.25605 -8.98007 -8.55724 -7.92509 -6.99617 -6.04491 -3.40952 0.68755 1.41453 2.46996 2.50169 3.17280 3.20986 3.40546 3.42209 3.46149 3.90171 4.43636 4.51131 4.64814 4.70309 4.83386 4.87552 4.98722 5.01446 5.20205 5.23712 5.34404 5.41806 5.46745 5.51797 5.58604 5.60962 5.67377 5.73796 5.89725 5.94413 6.01254 6.08034 6.15665 6.20225 6.24208 6.33032 6.38567 6.50979 6.53351 6.53539 6.66641 6.85782 7.05208 7.10349 7.61833 7.78448 7.97750 8.34221 8.68642 8.91145 9.63767 10.00582 11.11085 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010965 B = 0.003617 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.861868 B = 7739.059742 C = 8373.167826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.155 3.845 4 N -0.577 5.577 5 C -0.259 4.259 6 H 0.084 0.916 7 C 0.033 3.967 8 N -0.891 5.891 9 Si 0.861 3.139 10 H -0.286 1.286 11 H -0.296 1.296 12 H -0.263 1.263 13 C 0.119 3.881 14 C 0.485 3.515 15 O -0.493 6.493 16 N -0.675 5.675 17 C 0.238 3.762 18 C -0.148 4.148 19 C -0.057 4.057 20 C -0.169 4.169 21 C -0.042 4.042 22 C -0.187 4.187 23 C 0.519 3.481 24 O -0.515 6.515 25 O -0.353 6.353 26 C 0.061 3.939 27 C -0.152 4.152 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.418 0.582 39 H 0.158 0.842 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.135 0.865 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.228 5.609 -20.161 20.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.029 3.971 4 N -0.295 5.295 5 C -0.388 4.388 6 H 0.101 0.899 7 C -0.167 4.167 8 N -0.532 5.532 9 Si 0.690 3.310 10 H -0.215 1.215 11 H -0.224 1.224 12 H -0.187 1.187 13 C -0.012 4.012 14 C 0.271 3.729 15 O -0.365 6.365 16 N -0.325 5.325 17 C 0.138 3.862 18 C -0.169 4.169 19 C -0.076 4.076 20 C -0.188 4.188 21 C -0.060 4.060 22 C -0.191 4.191 23 C 0.366 3.634 24 O -0.405 6.405 25 O -0.270 6.270 26 C -0.012 4.012 27 C -0.209 4.209 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.260 0.740 39 H 0.176 0.824 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.153 0.847 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.538 5.783 -19.411 20.313 hybrid contribution 0.602 -1.376 -0.959 1.782 sum -0.937 4.408 -20.371 20.863 Atomic orbital electron populations 1.21718 0.96969 1.00591 1.01163 1.22142 0.94092 1.00484 1.01926 1.20938 0.82902 0.93489 0.99761 1.43807 1.00884 1.84179 1.00677 1.18821 1.03435 1.25619 0.90884 0.89856 1.25389 0.96555 0.98013 0.96778 1.69898 1.06888 1.39280 1.37110 0.87185 0.78380 0.85720 0.79676 1.21474 1.22401 1.18704 1.21408 0.99022 0.90696 0.90036 1.23482 0.75684 0.95410 0.78324 1.90582 1.47912 1.42494 1.55473 1.44668 1.56288 1.06794 1.24712 1.17970 0.91067 0.86866 0.90324 1.21564 1.01749 0.92032 1.01516 1.21360 0.93894 0.96391 0.95916 1.21008 1.05300 0.99431 0.93028 1.21147 0.94139 0.90622 1.00121 1.18763 1.16949 0.93613 0.89801 1.21059 0.73458 0.87268 0.81632 1.90678 1.44092 1.25540 1.80160 1.86544 1.79975 1.42612 1.17894 1.23044 1.02207 0.87867 0.88116 1.21803 1.03058 1.02696 0.93337 0.93453 0.93628 0.92948 0.93244 0.91548 0.92345 0.94410 0.92638 0.90627 0.89773 0.73999 0.82429 0.85148 0.85460 0.84698 0.91060 0.91093 0.91445 0.90209 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.15 -2.65 6.26 -26.73 -0.17 -2.82 16 3 C 0.15 3.17 5.67 -4.04 -0.02 3.15 16 4 N -0.58 -13.86 1.62 -174.61 -0.28 -14.14 16 5 C -0.26 -7.25 9.92 -15.06 -0.15 -7.40 16 6 H 0.08 2.55 8.06 -52.48 -0.42 2.12 16 7 C 0.03 0.95 5.29 -17.43 -0.09 0.85 16 8 N -0.89 -27.04 13.97 55.49 0.78 -26.26 16 9 Si 0.86 21.30 25.02 -169.99 -4.25 17.04 16 10 H -0.29 -6.81 6.65 56.52 0.38 -6.44 16 11 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 13 C 0.12 2.63 5.03 -5.19 -0.03 2.60 16 14 C 0.48 10.49 7.69 -10.99 -0.08 10.41 16 15 O -0.49 -11.88 13.67 5.55 0.08 -11.80 16 16 N -0.67 -12.63 4.81 -9.68 -0.05 -12.68 16 17 C 0.24 4.11 6.41 -83.48 -0.54 3.57 16 18 C -0.15 -2.51 8.68 -39.43 -0.34 -2.85 16 19 C -0.06 -0.74 10.03 -39.53 -0.40 -1.14 16 20 C -0.17 -1.87 10.02 -39.63 -0.40 -2.27 16 21 C -0.04 -0.49 9.61 -39.19 -0.38 -0.87 16 22 C -0.19 -2.73 5.89 -104.82 -0.62 -3.35 16 23 C 0.52 7.45 7.87 34.45 0.27 7.72 16 24 O -0.51 -8.32 13.63 -19.27 -0.26 -8.58 16 25 O -0.35 -4.16 9.49 -40.64 -0.39 -4.54 16 26 C 0.06 0.57 6.20 37.16 0.23 0.80 16 27 C -0.15 -0.94 10.29 37.16 0.38 -0.56 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.22 8.01 -51.92 -0.42 0.80 16 34 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.08 1.44 8.07 -51.93 -0.42 1.03 16 37 H 0.08 1.97 2.97 -51.93 -0.15 1.82 16 38 H 0.42 7.35 6.10 -40.82 -0.25 7.10 16 39 H 0.16 3.13 5.91 -52.49 -0.31 2.82 16 40 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.14 1.26 7.62 -52.49 -0.40 0.86 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -32.81 388.52 -7.51 -40.31 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.03 Total: 8.70 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.96 Total: 6.10 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.44 Total: -53.08 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.57 Total: -24.93 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.25 Total: 17.04 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.81 -7.51 -40.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350648785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.933 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds